Lsi05G003270 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Major latex protein
Location	chr05 : 4159802 .. 4165637 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCATTTGGTCCAAATGTTCCCTAAAAACCTTCATAGCTTTGAATTCCTTGAAGGAAATGACTTTACTTCTGGCTCTCTCATGCAATGGTCTTATGACATTGGTAAGTCATATTCAAACTTTTTTTCATTTGAAAACTTTGCATTAAATTTATTAAATTATTATTATATGTTCTCGACCAATAGGTTCGTGCTTCGAATCCCGGCCACCTCCCCACGTTAAACTAGGGTTTATTGTTAGATTATCGTGTGACAAAAAATATGAAAGAAATTTGAGTTTGTATAATCAATTTTCGAGCTTATATAATATAGATTTGGGTAGCTTGAATTATCTTGAGTAAACCTTAAACTCTATAAATTTTGCTTCTTAATTCTAAGATAAGACATATGCTCTAGATCGAGAGGCAGTGTTAAAAATATTTCTTCATTTGTGGTTGAACTCAAAAAAAAAATAATAACAAAATGAAAATGAAAAAAAAAAAAAGAAAAAAAAAAAATACAAGTCTAGTTTCCTAACTCTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGGGGGGGGGGGGGGGGGGGGGGGGGCAATTGTTAGGTTAAAATGGTTGCTTTCCCATTCTATATGTATTTTACCTTGGATCTTTATATTTTGTGAAGGAATTTAGGTGTCATAAAATCTGAATTTTTTAGACCGTTCATTTTGCAAATAGAAGTATTTATGTCTAAAAACATTTTCGATTTTATAGATTTTCTGAGAGCAAATTTATATATATATAAGTAAAGGTTGTTTTCAAATATAGAAAAATGAGTCAAACTATTTATAAATATATAAAATTTTTACTATCTATTACGGTAGATAGTGAAATTTTTCTATATTTGTAAATAGTTTGATATGTTTTCTATTCATACTAATTTCCCTTTTTATTTCAGTTATAAAAAGATATATTTTGGTGACTAAATATTTATTATTTTGAATTTTAATAAAAAAAAAACAGATCTCGTTTGGATTCTGTTGTGTATAATTCGTGTATTCCAAATTTACACGTGTATATCTTAATATTTGCGGCTAAAGATATCTTCAGCGATAAGTCTATCGCGGTGATCATATAGCGAAATTTTTCTATATTTATAAATAGTTTGACTCATTTTTTTATATTTAAAAATAATCGAAATAAAAATCTAAAAATCAATTGGAATGGCTCTATATACTAAGGTTTAACCGAAAATTAAAATTTTTACCCCCTCCCAAATAAATTTATTACGCATTTTTTTTGCAATATAACTTGCAAAATGGGTATTTCTCATCACCCTACCACTTTTCCTAACCTAAAGCAAAAAAATGATAGTGGGCCTGCATTGTGGCCCATTATCAAAATCTTCGAAATTTTCTCTCAATATTTGGCGAAGATAATTTTTATCTTTTCTCCAAAATTCTGATATTTCGTTCCAAATTTCAGTATGTCGAGCGACATTTAGTTATTAACACAAAAATATAGAAGTGAATGTATAGAGTTTAAAAGCATAATTTTTTAATAATAGAAAACTAAAAATATTTTTTAAAATTGAACATATTTCCTCACATTTTTTTATAATAGTTTGCATTTTTTTTTTTGTAAAAGTGTAAGCGATTCAGTTCGATTTTTTGTAGAAAACAAGAACCGAACCACTTATTAGGAAGCATTTGGGCGTGCTCCTTCACACCAAGCTGACCAATGAATTGTTTGATAATATATTTGGCACTTAATATATTTAATTTATCGTCGGTTCGAGTTTTCAACTCTTTTTTGACTAACCTGAAACCGACCCGATACTTTTTTATTTTTATGTTTTCAACCCTAAACCACCAAACTAATCGGCTTCAACTGAACTGACGAGCGGTTTCTGTCAATTTTTCGAGTTTTTCGGTTTTTCTTTATACCCTTACTTTCTTGAGTATAAGTGTTGAATTCTTAGTCAAATTCCAAAAACAAAAACAAGATTTAAAAAATTACTTTTTTTAGTTTTCAAAATTTTGCTTGGTTTTTGAAAACATTGGTAAAAAGTAGATAAGAAAGTAATAAATTTAGAGGTGGAAGGGGTGTTTGTAGGCTTAATTTTCAAAAACAAAAAATCAAAAACCAAATGGATTTGAAATGAGGCTTGGTTTTTTGTTTTTAGTTTTTGAAAATTAAGCCTACAAACATCCCTCTCACTACTAGATGTCTTGCTTTTTTATACTTTTTACCTATGTTTTGCTTAAAAAAGTAGTTTCCAAAAATATGTTTTTATCTTTAGAATTTGGTCAAGAATTCAATTTTTGTAATTAAGAAAAAGGAAAACAATTGTAAAAAAATGAGCTTAATTTTTAAACATTAAAAAAAACAAAATATTTTCCAAACTGGCCTAATTATCAAATGATTTCAAATCAATTAGTCAATTAGATTCCAAATCCATTTAGAGTTCTAAAATAATTCATATTTTTTAAAATCTTAGAATTTAAAATCATTTGTATTCAAATCCCGAAAGCATATATTTTTTTTTTTCTTTTTAAATCACGTATGAACAGTTATAACTTATAACCTAACTAACCGCCATAAGAGTTTAGATCAAATTAGTTGATTTTTCCCAATCAAAAAAAAAAAAAATTAGTTGATTTTTCCAAGTCGTCCAAGATTTAAATACAGAGCTGTAGTTTTTTTTCCAAATAATAATAATAATAATAATAATAATAATAATAAATAAATAAAACGTAGTTGTAGTGGATAATAATGCAAAATGCATTATTCGTAAAATAAAGTGGACTAATTAATTAAAAGAAAAAAAGATAATATTAAAAAGACTATTAAAAAAACAAAATTAGTCTAACATGCATTGGACCTCAACGCGCTTACCCACGAACACACTCGACCACATTTAATAATAGTAAAAACCATTATTCATAATAATTATTATTAAATATAGATATGTAGATATATTGACTTTTTATAATATTTTTATCATATTTTATATTTTATATTTAACATTGACATTGAATCAATATTTTTATTATTAAAAAATTTATATTTATACAACAAAATTTATAATTGTATCAATTAAATCCCTAAATTTTGATGAATGGATTAATTAGAAAATTTTTCATACTACTTTCTTTTATTGTGTGTCATGTCAAGGCGTTTTTAAAAATAGGATGAGACTCACATCAATTGGAGTCCTAAATATTTATGAAGGTAAATGTATAGTGTGAACATAAGAAGTACTAGAAATTTTTTCGAATCAATTTAAACTCTTACACATAATTTTCTTTGAAAATCGTTTCTGCATTTACTCTAATCATACATTTTGTAAAATCAACATTTGAAGAAATCTACACACGTTTGAAAATTGGTACATGGGTGATTTTCAAAGGTAATTGTAATGCATGGTCTAAATTGATTATGGCTTAAGAAAATTTAGAAGTTTAATTGACTCAAATTATAAGTTTTGCATGATATTGGTCGAATAAAATCTATATAGATGTGTAAATTGATATACTTGTTAAAATTGAGAATTTAAACTAATACAATTATTATAATATTTTAATTAATACAACCCAAAATTTAAGTGTATAAATTAACCTAAATTTTGAAAATTTAAACAGTATAAAAAAAGGGATAATAATACACAATGCCTTACTAAAGGACCTATATTTCATTTTTGTCTAGTTTTTCTATTATTTTTAAAAAATGTCCAAATAGCTTCTTAATTACACAAAATTAGGATCCAATTACCTTTTTGTCCTCAACCTATAATCAATTACACATATTTTAAAAAACGAGACTCAAAAGTTCCCTTGATTCACATGCAAGTTTTATTTTAACCAATTTTTTTTTAAAACCCCCACCCATTCTCTCTATCCCCCTTCTCTCTATTTCTCATCTCTCCACCTTCGCAGTAGCCCACCGATGACCACATTGGATGACGAATGGCAGACTCGGAGCACAACTAGACTACGAACGATGATGGTGGACTCAGAGCAGACGAACGACAAACTCTTTGCAGACGACGGATGACGAACGGTTGAATCAGGTTCTTTATGAACAGATGGACGACTCTAAGCAGACTTGTTTTCCAGATTGCCCCTCTTCGCAATTGGGTTCATTCTCTTCATGATTTTGTTTGTGATAGCGATGGTGATAGGGTTTCACGAAGAAGAAAAAGAGAGAAGAGGGGGAGAGTTCTTGCACGCACAAACCTATGAGCTTTTTTCCTTTCTTTTATATATATTGTGATATATGTACTTTTTCTTTGTTTTTTTATAGCTTTCATAGGAAATTTGATATATACTGTGACATATGCATTCGTTTATTTGATATAAATGAGAGTTTTTTTTTTTGTTTTTATTTAGACTTCATATATTATGATATATACAAATTTTGAATTGTTGGGATTTTTGACTACTTAAATAGTATATATGATATATATTGTGATTTATGTTGAAATATTAAGCAAATATATGATTTATATACCATGATATATTTTATATATTGGTTTATACTATCATTTATGTCAAGCAGAGTTAATCTCTAATTTATAAACGGTAGTATATTTCATATATTTGTTATAATATTTTCAAATACCTAACAAAATGTTCTAAGATATATTTAAAATAATCGTGAATCCTTCGGAAAAACTAATAAGTTGATATGTGAAACTAACATAAATAGAAAATAAACTTTCATTAAATGCATTTTCTCTCCCCAATTAACTAAAAGAATAAAATCTCAACAAATAAATATTTATATTTTCTCTCTTAAATTAAACAAAAGGAATAAAATCTCAACAAATAAACACATTCTCTTCAACGTTAAGATGCTTCGTAAATATGAAAAAAAAATTCTCAATGCTACATACTCTCCAACCGACCACCACACTCAAGGGCTATTTTAGTCCGAAAAGTCTATTAAATCTCATATACAAAAATATAAAAAAGTATAGACATTTAGGATAAGAAAATTATTTTAAATGATAAAATGCTAAAAATATTTACAAATACAGCAAAATTTAACTGTCTATCTCCGCTAGACTGCGATTGACACGATAGTAATCTATCACAATCTATCGTAGATAGATAATGAAATTTTTATATAATTATAAATATTTTTGTTCAGTTTTTTATATTTGAAAACATTTCTTTATGAAAACAAAAAAATTTAAAAGGATTAAATCTTTAAATAATTTTTAAAAAACAAAGTCTAAAATGTTGATGTAGACCGAAACGTAGACTCCCAATTTTTAGAAAATATCAGTGTAATTATTGATGGGAATAGATATTTATAA

mRNA sequence

ATGGACCATTTGGTCCAAATGTTCCCTAAAAACCTTCATAGCTTTGAATTCCTTGAAGGAAATGACTTTACTTCTGGCTCTCTCATGCAATGGTCTTATGACATTGGTTCGTGCTTCGAATCCCGGCCACCTCCCCACGTTAAACTAGGGTTTATTGTTAGATTATCGTGTGACAAAAAATATGAAAGAAATTTGAGTTTGTATAATCAATTTTCGAGCTTATATAATATAGATTTGGACCGAAACGTAGACTCCCAATTTTTAGAAAATATCAGTGTAATTATTGATGGGAATAGATATTTATAA

Coding sequence (CDS)

ATGGACCATTTGGTCCAAATGTTCCCTAAAAACCTTCATAGCTTTGAATTCCTTGAAGGAAATGACTTTACTTCTGGCTCTCTCATGCAATGGTCTTATGACATTGGTTCGTGCTTCGAATCCCGGCCACCTCCCCACGTTAAACTAGGGTTTATTGTTAGATTATCGTGTGACAAAAAATATGAAAGAAATTTGAGTTTGTATAATCAATTTTCGAGCTTATATAATATAGATTTGGACCGAAACGTAGACTCCCAATTTTTAGAAAATATCAGTGTAATTATTGATGGGAATAGATATTTATAA

Protein sequence

MDHLVQMFPKNLHSFEFLEGNDFTSGSLMQWSYDIGSCFESRPPPHVKLGFIVRLSCDKKYERNLSLYNQFSSLYNIDLDRNVDSQFLENISVIIDGNRYL

Homology

[Close]

BLAST of Lsi05G003270 vs. TrEMBL
Match: A0A0A0LAX1_CUCSA (Major latex protein OS=Cucumis sativus GN=Csa_3G319290 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.7e-08
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1  MDHLVQMFPKNLHSFEFLEGNDFTSGSLMQWSYDI 36
          M  L QMFPKNLH+ EFLEGNDFT+G+LMQWSYDI
Sbjct: 28 MFQLAQMFPKNLHACEFLEGNDFTTGALMQWSYDI 62

[Close]

BLAST of Lsi05G003270 vs. NCBI nr
Match: gi|449456190|ref|XP_004145833.1| (PREDICTED: MLP-like protein 31 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1  MDHLVQMFPKNLHSFEFLEGNDFTSGSLMQWSYDI 36
          M  L QMFPKNLH+ EFLEGNDFT+G+LMQWSYDI
Sbjct: 28 MFQLAQMFPKNLHACEFLEGNDFTTGALMQWSYDI 62

[Close]

BLAST of Lsi05G003270 vs. NCBI nr
Match: gi|659114434|ref|XP_008457052.1| (PREDICTED: major latex protein 149-like [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 1  MDHLVQMFPKNLHSFEFLEGNDFTSGSLMQWSYDI 36
          M  L QMFPKNLH+ EFLEGNDFT+G+LMQWSYDI
Sbjct: 28 MFQLAQMFPKNLHNGEFLEGNDFTTGALMQWSYDI 62

The following BLAST results are available for this feature:

BLAST of Lsi05G003270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G003270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAX1_CUCSA	9.7e-08	80.00	Major latex protein OS=Cucumis sativus GN=Csa_3G319290 PE=4 SV=1	[more]

BLAST of Lsi05G003270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G003270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456190\|ref\|XP_004145833.1\|	1.4e-07	80.00	PREDICTED: MLP-like protein 31 [Cucumis sativus]	[more]
gi\|659114434\|ref\|XP_008457052.1\|	1.8e-07	80.00	PREDICTED: major latex protein 149-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003270.1	Lsi05G003270.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003270	MELO3C020264.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003270	CsGy3G020800	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003270	CsaV3_3G021220	Cucumber (Chinese Long) v3	cuclsiB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003270	Watermelon (97103) v2	lsiwmbB329
Lsi05G003270	Wax gourd	lsiwgoB447
Lsi05G003270	Cucumber (Gy14) v1	cgylsiB607
Lsi05G003270	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003270	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003270	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003270	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003270	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003270	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003270	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003270	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003270	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003270	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003270	Watermelon (97103) v1	lsiwmB361
Lsi05G003270	Cucumber (Gy14) v2	cgyblsiB192
Lsi05G003270	Silver-seed gourd	carlsiB464
Lsi05G003270	Silver-seed gourd	carlsiB700