Lsi05G003020 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA-directed RNA polymerase subunit beta
Location	chr05 : 3867510 .. 3868727 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCGGAAGAAATGGTCGGAGCAGGAAGAAGAAACCCTTCTTTCCAAATACTCCGAACTTCTTAGCTGCGGAACCCTAGCGAAGCTCAAAACTCGCGAGAAGAAGTTCAAGCCCATTGCCGACCATGTCAATTCCGTTCACCATCTTCAGGATCCCCTTACATTCCCTTTCCGCTGGTCATGGCGGGACGTATCAATCAAGGTCCAGAACATGCGCCACCAGTATCTCGGCGTCAAGCAGAAGATTAGGCTTTCCGATGACGACTTCAATTGGAAGGACGGCGAGAATCACTGGCAGAATTTCATGAAATTCAAGGAGGTTTTCGGAGATTTGCCTCTCGATTTGAAGGGGAAGAGGCTGGTGTTTGGGAACAGCGCTGCGGTTGGTTTCGATGGCAGTGAGGATTTGGAATTCGGAATCGGTGTTGATTCCGATGATTTGGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGATGAAGATCTGAAAGGGAGAGAACAAGGCGGCGGAAAAGATGACGGCCATGGCGGTGGTCGTGAGGTGGTGGAAGTCGTCGGAAATGAGGGGAAATGCGCCGGATTCGGTGAAATCGGCGTTTCAGAGACGAGGAAATCGAAGAAGGGTTCTGGATTGAATAAGCGATTGGGAATGGTGGGGCTGCGAGTTTTGGAATTGAGAGACATGGCAGCAAAAAGGGAAGAACAGAGGAGAGACAGAGCATTCAGAAGGGAGAAAAACGAGGCTGAAAGAGAAGAAAAGATGAAGAACACAGAGCTGAAGAAGGAGAAAGTGATGAATGAAAAGGAAGAGAAATTGGATAAGAGAGAGCTGGAGATAGAAGAAAGAGAGTTACAATGGAGGCAAAGGGAATTTGAGAACAGGATGAGAATGGAAAGGGAATTTGTGGAGGAGAGAAGAAAGAGGATGAGAATGGAAGAGAAAATGGAGGAAGAAGAGATGGAATGGAGGGAAAGGATAGTGGAAATGCAGATTGAACATGAGAAACAGATGATGCAAATGCAAGCTGAAGCATTTCAGAATCAAATGCAGATATTGGGGGTAATTGCAAGGCTTCTTTGCCAGTATTTTGGGTCTGCAAATGATGGATTAGGGGCTTTGCCACCTCAAGTTCTTCAGAATTTGCAACATCCTGGTGAATTGGATGACAATGGGAAGCCTGATGCCAATTCACCTTCTGAGTTCTTGTGA

mRNA sequence

ATGAAGCGGAAGAAATGGTCGGAGCAGGAAGAAGAAACCCTTCTTTCCAAATACTCCGAACTTCTTAGCTGCGGAACCCTAGCGAAGCTCAAAACTCGCGAGAAGAAGTTCAAGCCCATTGCCGACCATGTCAATTCCGTTCACCATCTTCAGGATCCCCTTACATTCCCTTTCCGCTGGTCATGGCGGGACGTATCAATCAAGGTCCAGAACATGCGCCACCAGTATCTCGGCGTCAAGCAGAAGATTAGGCTTTCCGATGACGACTTCAATTGGAAGGACGGCGAGAATCACTGGCAGAATTTCATGAAATTCAAGGAGGTTTTCGGAGATTTGCCTCTCGATTTGAAGGGGAAGAGGCTGGTGTTTGGGAACAGCGCTGCGGTTGGTTTCGATGGCAGTGAGGATTTGGAATTCGGAATCGGTGTTGATTCCGATGATTTGGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGATGAAGATCTGAAAGGGAGAGAACAAGGCGGCGGAAAAGATGACGGCCATGGCGGTGGTCGTGAGGTGGTGGAAGTCGTCGGAAATGAGGGGAAATGCGCCGGATTCGGTGAAATCGGCGTTTCAGAGACGAGGAAATCGAAGAAGGGTTCTGGATTGAATAAGCGATTGGGAATGGTGGGGCTGCGAGTTTTGGAATTGAGAGACATGGCAGCAAAAAGGGAAGAACAGAGGAGAGACAGAGCATTCAGAAGGGAGAAAAACGAGGCTGAAAGAGAAGAAAAGATGAAGAACACAGAGCTGAAGAAGGAGAAAGTGATGAATGAAAAGGAAGAGAAATTGGATAAGAGAGAGCTGGAGATAGAAGAAAGAGAGTTACAATGGAGGCAAAGGGAATTTGAGAACAGGATGAGAATGGAAAGGGAATTTGTGGAGGAGAGAAGAAAGAGGATGAGAATGGAAGAGAAAATGGAGGAAGAAGAGATGGAATGGAGGGAAAGGATAGTGGAAATGCAGATTGAACATGAGAAACAGATGATGCAAATGCAAGCTGAAGCATTTCAGAATCAAATGCAGATATTGGGGGTAATTGCAAGGCTTCTTTGCCAGTATTTTGGGTCTGCAAATGATGGATTAGGGGCTTTGCCACCTCAAGTTCTTCAGAATTTGCAACATCCTGGTGAATTGGATGACAATGGGAAGCCTGATGCCAATTCACCTTCTGAGTTCTTGTGA

Coding sequence (CDS)

ATGAAGCGGAAGAAATGGTCGGAGCAGGAAGAAGAAACCCTTCTTTCCAAATACTCCGAACTTCTTAGCTGCGGAACCCTAGCGAAGCTCAAAACTCGCGAGAAGAAGTTCAAGCCCATTGCCGACCATGTCAATTCCGTTCACCATCTTCAGGATCCCCTTACATTCCCTTTCCGCTGGTCATGGCGGGACGTATCAATCAAGGTCCAGAACATGCGCCACCAGTATCTCGGCGTCAAGCAGAAGATTAGGCTTTCCGATGACGACTTCAATTGGAAGGACGGCGAGAATCACTGGCAGAATTTCATGAAATTCAAGGAGGTTTTCGGAGATTTGCCTCTCGATTTGAAGGGGAAGAGGCTGGTGTTTGGGAACAGCGCTGCGGTTGGTTTCGATGGCAGTGAGGATTTGGAATTCGGAATCGGTGTTGATTCCGATGATTTGGAGGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGATGAAGATCTGAAAGGGAGAGAACAAGGCGGCGGAAAAGATGACGGCCATGGCGGTGGTCGTGAGGTGGTGGAAGTCGTCGGAAATGAGGGGAAATGCGCCGGATTCGGTGAAATCGGCGTTTCAGAGACGAGGAAATCGAAGAAGGGTTCTGGATTGAATAAGCGATTGGGAATGGTGGGGCTGCGAGTTTTGGAATTGAGAGACATGGCAGCAAAAAGGGAAGAACAGAGGAGAGACAGAGCATTCAGAAGGGAGAAAAACGAGGCTGAAAGAGAAGAAAAGATGAAGAACACAGAGCTGAAGAAGGAGAAAGTGATGAATGAAAAGGAAGAGAAATTGGATAAGAGAGAGCTGGAGATAGAAGAAAGAGAGTTACAATGGAGGCAAAGGGAATTTGAGAACAGGATGAGAATGGAAAGGGAATTTGTGGAGGAGAGAAGAAAGAGGATGAGAATGGAAGAGAAAATGGAGGAAGAAGAGATGGAATGGAGGGAAAGGATAGTGGAAATGCAGATTGAACATGAGAAACAGATGATGCAAATGCAAGCTGAAGCATTTCAGAATCAAATGCAGATATTGGGGGTAATTGCAAGGCTTCTTTGCCAGTATTTTGGGTCTGCAAATGATGGATTAGGGGCTTTGCCACCTCAAGTTCTTCAGAATTTGCAACATCCTGGTGAATTGGATGACAATGGGAAGCCTGATGCCAATTCACCTTCTGAGTTCTTGTGA

Protein sequence

MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRWSWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKRLVFGNSAAVGFDGSEDLEFGIGVDSDDLEEEEEEEEEEEEEDEDLKGREQGGGKDDGHGGGREVVEVVGNEGKCAGFGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKREEQRRDRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFENRMRMEREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVIARLLCQYFGSANDGLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL

Homology

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BLAST of Lsi05G003020 vs. TrEMBL
Match: A0A0A0LB45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G365940 PE=4 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 2.3e-193
Identity = 371/409 (90.71%), Postives = 384/409 (93.89%), Query Frame = 1


Query: 1   MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60
           MKRKKWSEQEEETLLSKYS+LL+CGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW
Sbjct: 1   MKRKKWSEQEEETLLSKYSDLLNCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60

Query: 61  SWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKR 120
           SWRDVSIKVQNMRHQYLGVKQKIR+SDDDFNWKDGENHWQNFMK+K+VFGDLPLDLKGKR
Sbjct: 61  SWRDVSIKVQNMRHQYLGVKQKIRVSDDDFNWKDGENHWQNFMKYKQVFGDLPLDLKGKR 120

Query: 121 LVFGNSAAVGFDGSEDLEFGIGVDSDDLEEEEEEEEEEEEEDEDLKGREQGGGKDDGHGG 180
           LVFGN AAV FDGSEDLEFGIGVDSDDLEEEEE     EEEDEDLKGRE G  K  GH G
Sbjct: 121 LVFGNGAAVDFDGSEDLEFGIGVDSDDLEEEEE-----EEEDEDLKGREHGRRKHPGHRG 180

Query: 181 GREVVEVVGNEGKCAGFGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKREEQRR 240
           G +VVEVVGNEGKC GFG+IGVSETRKSKKGS +N+RLGMVG+RVLELRDMAAKREEQRR
Sbjct: 181 GPQVVEVVGNEGKCCGFGQIGVSETRKSKKGSAMNRRLGMVGMRVLELRDMAAKREEQRR 240

Query: 241 DRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFENRMRM 300
           +RAFRREKNE EREEKMKN E KKEK+MNEKEE+LD RELEIEERELQWRQREFENRMRM
Sbjct: 241 ERAFRREKNEVEREEKMKNIEFKKEKLMNEKEEQLDNRELEIEERELQWRQREFENRMRM 300

Query: 301 EREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVIAR 360
           EREF EERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVIAR
Sbjct: 301 EREFEEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVIAR 360

Query: 361 LLCQYFGSAND----GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 406
           LLCQYFGSAND    GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL
Sbjct: 361 LLCQYFGSANDGLGSGLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 404

[Close]

BLAST of Lsi05G003020 vs. TrEMBL
Match: W9SQE5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027213 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 9.8e-128
Identity = 273/411 (66.42%), Postives = 325/411 (79.08%), Query Frame = 1


Query: 1   MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60
           MKRKKWSEQEE+TLL+KYSELL+ G LAKLKTREKKFKPIADHVN+ HH+ DP+ FPF+W
Sbjct: 1   MKRKKWSEQEEQTLLTKYSELLNSGALAKLKTREKKFKPIADHVNAAHHVSDPVAFPFQW 60

Query: 61  SWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKR 120
           SWRDVSIKVQNMRHQYLGVKQKIR+SDD+FNWKDGENHW+NF+K+KEVFGD+ L+ KGKR
Sbjct: 61  SWRDVSIKVQNMRHQYLGVKQKIRISDDEFNWKDGENHWENFLKYKEVFGDVELESKGKR 120

Query: 121 LVFGNSAAVGFDGSEDLEFGIGVDSDDLEEEE-EEEEEEEEEDEDLKGREQGGGKDDGHG 180
           L+  N    G+ G    + G+ +D +D EEEE EEEEEEEEE E+  G   GG  +   G
Sbjct: 121 LLCENVDVFGYCG----DLGVEIDCEDSEEEEGEEEEEEEEELEEEDGDGDGGSINTDIG 180

Query: 181 G-GREVVEVVGNEGKCAGFGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKREEQ 240
             G E+ E  G  G   GFG  G S+  K KKG G+ +RLG+VG  VLELRD+  KREE+
Sbjct: 181 EVGEEIKESDGELGD-LGFGMTGKSKKNK-KKGLGVMRRLGLVGAGVLELRDVMMKREER 240

Query: 241 RRDRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFENRM 300
           RR+R FRREK E +REE     E +KEK   E+E+ LD RE E+EER  +W +REFE R+
Sbjct: 241 RREREFRREKGEEKREE----GEFRKEKRRIEQEDWLDNREFELEERHSRWAKREFERRV 300

Query: 301 RMEREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVI 360
           R+EREF EERR+RMR+EEK EEEEMEWRER+V +QIEHEKQMMQMQAEA QNQ+Q+LG++
Sbjct: 301 RLEREFAEERRRRMRVEEKREEEEMEWRERMVGLQIEHEKQMMQMQAEACQNQIQVLGMM 360

Query: 361 ARLLCQYFGSAND----GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 406
           AR +CQ+FGSAND    GLG+LPPQ+LQNLQHPGEL DNGKPDANSPSEF+
Sbjct: 361 ARFVCQFFGSANDGLGGGLGSLPPQILQNLQHPGELGDNGKPDANSPSEFI 401

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BLAST of Lsi05G003020 vs. TrEMBL
Match: A0A061FRU0_THECC (Receptor-type tyrosine-protein phosphatase U OS=Theobroma cacao GN=TCM_045444 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 1.1e-123
Identity = 259/413 (62.71%), Postives = 320/413 (77.48%), Query Frame = 1


Query: 1   MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60
           MKRKKWSE EE+TLLSKYS+LL+ GTL+KLKTREKKFKPIADHVNSVHHLQDP+TFPF+W
Sbjct: 1   MKRKKWSELEEQTLLSKYSDLLNSGTLSKLKTREKKFKPIADHVNSVHHLQDPITFPFKW 60

Query: 61  SWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKR 120
           SWRDVSIKVQNMRHQYLGVKQKIR+S D+FNWKDGENHW+NF+K+KEVFGD+ L++KGK+
Sbjct: 61  SWRDVSIKVQNMRHQYLGVKQKIRISKDEFNWKDGENHWENFLKYKEVFGDVELEVKGKK 120

Query: 121 LVFGNSAAVGFDGSEDL-EFGIGVDSDDLEEEEEEEEEEEEEDEDLKGREQGGGKDDGHG 180
                S   G D  ED  + G  +DS+D EEEEE++  +              G  DG  
Sbjct: 121 --GSESNGNGSDLFEDCCDLGFEIDSEDFEEEEEDDGVD--------------GDGDGDD 180

Query: 181 GGREVVEVVGNEGKCAG---FGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKRE 240
           GG E V   G+EG+  G   FG++G+S  RKS+KG G +K  G++G +VLELRD+  +RE
Sbjct: 181 GGEEKV---GSEGEFGGEREFGDVGISRVRKSRKGLGGSKGFGLLGTQVLELRDVVVRRE 240

Query: 241 EQRRDRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFEN 300
           E+R++R F REK E ERE+K +  E  KEK  +E+EE+++ RE+E+EEREL W +RE + 
Sbjct: 241 EKRKEREFVREKGEMEREQKRRELEFGKEKRWSEREERVEDREMELEERELVWARREGDR 300

Query: 301 RMRMEREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILG 360
           R+R+E+E  EERR+R RMEEK EEEEM+W+ER+V +QIEHEK MMQM  +A QNQMQILG
Sbjct: 301 RLRLEKELDEERRRRRRMEEKREEEEMDWKERLVGLQIEHEKTMMQMHMDACQNQMQILG 360

Query: 361 VIARLLCQYFGSANDGLGA----LPPQVLQNLQHPGELDDNGKPDANSPSEFL 406
           V+ARL CQ++GSANDGLGA    LPPQVLQNLQHPG L DN KPD+NSPSEF+
Sbjct: 361 VMARLFCQFYGSANDGLGAGLGGLPPQVLQNLQHPGGLGDNVKPDSNSPSEFI 394

[Close]

BLAST of Lsi05G003020 vs. TrEMBL
Match: A0A0D2TX80_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G294600 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 3.3e-123
Identity = 257/410 (62.68%), Postives = 313/410 (76.34%), Query Frame = 1


Query: 1   MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60
           MKRKKWSE EE+TLLSKYS+LL+ GTL+KLKTREKKFKPIADHVNSVHHLQDP+TFPF+W
Sbjct: 1   MKRKKWSELEEQTLLSKYSDLLNSGTLSKLKTREKKFKPIADHVNSVHHLQDPITFPFKW 60

Query: 61  SWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKR 120
           SWRDVSIKVQNMRHQYLGVKQKIR+S D+FNWKDGENHW+NF+K+KEVFGD+ L++KGK+
Sbjct: 61  SWRDVSIKVQNMRHQYLGVKQKIRISKDEFNWKDGENHWENFLKYKEVFGDVELEVKGKK 120

Query: 121 LVFGNSAAVGFDGSEDL-EFGIGVDSDDLEEEEEEEEEEEEEDEDLKGREQGGGKDDGHG 180
            +  N    G D  ED  + G  +DS+D EEEEE++                GG  DG  
Sbjct: 121 GIESNGN--GSDLFEDCCDLGFAIDSEDFEEEEEDDGV--------------GGDGDGDD 180

Query: 181 GGREVVEVVGNEGKCAGFGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKREEQR 240
           GG E +   G  G    FG+IG+S  RKS KG G +K  G++G +VLELRD   +REE+R
Sbjct: 181 GGDEKLGPEGEFGGEREFGDIGISRVRKSSKGVGGSKGFGLLGTQVLELRDGVVRREEKR 240

Query: 241 RDRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFENRMR 300
           ++R F REK E ERE K +  E  KEK+ +E+EE+++  E+E+EEREL W ++E E R+R
Sbjct: 241 KEREFAREKVEMEREHKRREVEFGKEKLWSEREERMEDWEMELEERELFWARKEGERRLR 300

Query: 301 MEREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVIA 360
           +E+E  EERRKR  MEEK+EEE MEWRER++ +QIEHEK MMQM  EA QNQMQILGV+A
Sbjct: 301 LEKELDEERRKRREMEEKLEEEAMEWRERLLGLQIEHEKAMMQMHMEACQNQMQILGVMA 360

Query: 361 RLLCQYFGSAND----GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 406
           RL CQ++GSAND    GLG LPPQVLQNLQHPG L DNGKPD++SPSEF+
Sbjct: 361 RLFCQFYGSANDGLAAGLGGLPPQVLQNLQHPGGLGDNGKPDSSSPSEFI 394

[Close]

BLAST of Lsi05G003020 vs. TrEMBL
Match: B9H398_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s08640g PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.8e-121
Identity = 253/409 (61.86%), Postives = 320/409 (78.24%), Query Frame = 1


Query: 1   MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60
           MKRKKWSE EE+TLLSKYS+LL+ GTL+KLKTREKKF+PIADHVN++HHLQDP+ +PF+W
Sbjct: 1   MKRKKWSELEEQTLLSKYSDLLTSGTLSKLKTREKKFRPIADHVNTIHHLQDPIGYPFKW 60

Query: 61  SWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKR 120
           SWRDVSIKVQNMRHQYLGVKQKIR+S D+FNWKDGENHW+NF+K+KEVFGD+ L++K K+
Sbjct: 61  SWRDVSIKVQNMRHQYLGVKQKIRISKDEFNWKDGENHWENFLKYKEVFGDVELEVKSKK 120

Query: 121 LVFGNSAAVGFDGSEDLEFGIGVDSDDLEEEEEEEEEEEEEDEDLKGREQGGGKDDGHGG 180
              G+  +  F    DL  G G+DS+D  EE+++EEE+ EE+ED+ G     G +D  GG
Sbjct: 121 SS-GSGDSDLFKDCGDL--GFGIDSEDYLEEDDQEEEDGEEEEDVNG----DGGNDNVGG 180

Query: 181 GREVVEVVGNEGKCAGFGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKREEQRR 240
           G E  E  G +G     GE+G+    K KKG G N+RLG++G +V++LRD+  +REE+RR
Sbjct: 181 GEEDGEFRGEKGN----GEMGIGRKEKMKKGLGGNRRLGLLGAQVMDLRDVVLRREEKRR 240

Query: 241 DRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFENRMRM 300
           +R F  EK+  E E++ +  E +++   +EKEE+++  E+E+EEREL W +REFE R R+
Sbjct: 241 EREFNGEKSVLESEKRRRELEYRRDMWRSEKEERVENWEMELEERELMWARREFERRERV 300

Query: 301 EREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVIAR 360
           ERE  EERRKR  MEEK EEEEMEWRER++ MQIEHEK MMQ+ A+A QNQMQILGV+AR
Sbjct: 301 ERELDEERRKRRLMEEKREEEEMEWRERMLGMQIEHEKAMMQIHADACQNQMQILGVMAR 360

Query: 361 LLCQYFGSAND----GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 406
            +CQ+FGSAND    GLG LPPQVLQNLQHPG L D+GKPDANSPSEF+
Sbjct: 361 FICQFFGSANDGLGGGLGGLPPQVLQNLQHPGGLGDSGKPDANSPSEFM 398

[Close]

BLAST of Lsi05G003020 vs. NCBI nr
Match: gi|659114487|ref|XP_008457076.1| (PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like [Cucumis melo])

HSP 1 Score: 689.5 bits (1778), Expect = 3.5e-195
Identity = 375/411 (91.24%), Postives = 389/411 (94.65%), Query Frame = 1


Query: 1   MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60
           MKRKKWSEQEEETLLSKYS+LL+CG LAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW
Sbjct: 1   MKRKKWSEQEEETLLSKYSDLLNCGALAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60

Query: 61  SWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKR 120
           SWRDVSIKVQNMRHQYLGVKQKIR+SDDDFNWKDGENHWQNFMK+K+VFGDLPLDLKGKR
Sbjct: 61  SWRDVSIKVQNMRHQYLGVKQKIRVSDDDFNWKDGENHWQNFMKYKQVFGDLPLDLKGKR 120

Query: 121 LVFGNSAAVGFDGSEDLEFGIGVDSDDLEEEEEEEEEE--EEEDEDLKGREQGGGKDDGH 180
           LVFGN AAV FDGSEDLEFGIGVDSDDLEEEEEEEEEE  EEEDEDLKGRE G GKD  H
Sbjct: 121 LVFGNGAAVDFDGSEDLEFGIGVDSDDLEEEEEEEEEEEEEEEDEDLKGREHGRGKDQDH 180

Query: 181 GGGREVVEVVGNEGKCAGFGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKREEQ 240
            GG +VVEV+GNEGKC GFG+IGVSETRKSKKGS +N+RLGMVG+RVLELRD+AAKREEQ
Sbjct: 181 RGGPQVVEVLGNEGKCGGFGQIGVSETRKSKKGSAMNRRLGMVGMRVLELRDIAAKREEQ 240

Query: 241 RRDRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFENRM 300
           RRDRAFRREKNE EREEKMKN E KKEK+MNEKEE+LD RELEIEERELQWRQREFENRM
Sbjct: 241 RRDRAFRREKNEVEREEKMKNIEFKKEKLMNEKEEQLDNRELEIEERELQWRQREFENRM 300

Query: 301 RMEREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVI 360
           RMEREF EERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVI
Sbjct: 301 RMEREFEEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVI 360

Query: 361 ARLLCQYFGSAND----GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 406
           ARLLCQYFGSAND    GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL
Sbjct: 361 ARLLCQYFGSANDGLGSGLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 411

[Close]

BLAST of Lsi05G003020 vs. NCBI nr
Match: gi|778680968|ref|XP_011651431.1| (PREDICTED: uncharacterized protein KIAA1211 homolog [Cucumis sativus])

HSP 1 Score: 682.9 bits (1761), Expect = 3.3e-193
Identity = 371/409 (90.71%), Postives = 384/409 (93.89%), Query Frame = 1


Query: 1   MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60
           MKRKKWSEQEEETLLSKYS+LL+CGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW
Sbjct: 1   MKRKKWSEQEEETLLSKYSDLLNCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60

Query: 61  SWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKR 120
           SWRDVSIKVQNMRHQYLGVKQKIR+SDDDFNWKDGENHWQNFMK+K+VFGDLPLDLKGKR
Sbjct: 61  SWRDVSIKVQNMRHQYLGVKQKIRVSDDDFNWKDGENHWQNFMKYKQVFGDLPLDLKGKR 120

Query: 121 LVFGNSAAVGFDGSEDLEFGIGVDSDDLEEEEEEEEEEEEEDEDLKGREQGGGKDDGHGG 180
           LVFGN AAV FDGSEDLEFGIGVDSDDLEEEEE     EEEDEDLKGRE G  K  GH G
Sbjct: 121 LVFGNGAAVDFDGSEDLEFGIGVDSDDLEEEEE-----EEEDEDLKGREHGRRKHPGHRG 180

Query: 181 GREVVEVVGNEGKCAGFGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKREEQRR 240
           G +VVEVVGNEGKC GFG+IGVSETRKSKKGS +N+RLGMVG+RVLELRDMAAKREEQRR
Sbjct: 181 GPQVVEVVGNEGKCCGFGQIGVSETRKSKKGSAMNRRLGMVGMRVLELRDMAAKREEQRR 240

Query: 241 DRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFENRMRM 300
           +RAFRREKNE EREEKMKN E KKEK+MNEKEE+LD RELEIEERELQWRQREFENRMRM
Sbjct: 241 ERAFRREKNEVEREEKMKNIEFKKEKLMNEKEEQLDNRELEIEERELQWRQREFENRMRM 300

Query: 301 EREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVIAR 360
           EREF EERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVIAR
Sbjct: 301 EREFEEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVIAR 360

Query: 361 LLCQYFGSAND----GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 406
           LLCQYFGSAND    GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL
Sbjct: 361 LLCQYFGSANDGLGSGLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 404

[Close]

BLAST of Lsi05G003020 vs. NCBI nr
Match: gi|645246178|ref|XP_008229232.1| (PREDICTED: trichohyalin-like [Prunus mume])

HSP 1 Score: 468.8 bits (1205), Expect = 9.8e-129
Identity = 277/410 (67.56%), Postives = 324/410 (79.02%), Query Frame = 1


Query: 1   MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60
           MKRKKWSE EE TLL+KYSELL  G LAKLKTREKKFKPIADHVNSVHHL DP+TFPF+W
Sbjct: 1   MKRKKWSELEELTLLTKYSELLISGALAKLKTREKKFKPIADHVNSVHHLHDPVTFPFKW 60

Query: 61  SWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKR 120
           SWRDVSIKVQNMRHQYLGVKQKIR+S D+FNWKDGENHW+NF+K+KEVFGD+ LD+KGKR
Sbjct: 61  SWRDVSIKVQNMRHQYLGVKQKIRVSKDEFNWKDGENHWENFLKYKEVFGDVELDVKGKR 120

Query: 121 LVFGNSAAVGFDGSEDLEFGIGVDSDDLEEEEEEEEEEEEEDEDLKGREQGGGKDDGHGG 180
                +  V F    DL  G G+DS+DLEEEE+EEEEEEE  ED +  E G G  DG  G
Sbjct: 121 ACESENLDV-FGDCGDL--GFGIDSEDLEEEEDEEEEEEEPLEDDEEEEDGSG--DGDNG 180

Query: 181 GREVVEVVGNE-GKCAGFGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKREEQR 240
             E+    G E G     G++G +  RK  K  GL++RLG+V  +VL+LRD+  KREE+ 
Sbjct: 181 LVELGRSEGGEFGGQREIGDVGFAPKRKLSK-VGLHRRLGLVSAQVLDLRDVVVKREERT 240

Query: 241 RDRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFENRMR 300
           R+R  RRE +EAEREEK K  E ++EK  NE+EE L+ RELE+EERE+ W ++EFE R+R
Sbjct: 241 RERECRRENSEAEREEKRKELECRREKRRNEREEWLEDRELELEEREVMWARKEFEKRLR 300

Query: 301 MEREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVIA 360
           +EREF EERR+RMRMEEK EE E+EWRER+V +QIEHEKQMMQM AEA QNQMQILGV+A
Sbjct: 301 LEREFDEERRRRMRMEEKREEVELEWRERMVSLQIEHEKQMMQMHAEASQNQMQILGVMA 360

Query: 361 RLLCQYFGSAND----GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 406
           RL+CQ+FGS ND    GLGALPPQVLQNLQHPG+L  NGKP+ANSPSEFL
Sbjct: 361 RLVCQFFGSVNDGLGGGLGALPPQVLQNLQHPGDLGHNGKPEANSPSEFL 404

[Close]

BLAST of Lsi05G003020 vs. NCBI nr
Match: gi|703147290|ref|XP_010109015.1| (hypothetical protein L484_027213 [Morus notabilis])

HSP 1 Score: 464.9 bits (1195), Expect = 1.4e-127
Identity = 273/411 (66.42%), Postives = 325/411 (79.08%), Query Frame = 1


Query: 1   MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60
           MKRKKWSEQEE+TLL+KYSELL+ G LAKLKTREKKFKPIADHVN+ HH+ DP+ FPF+W
Sbjct: 1   MKRKKWSEQEEQTLLTKYSELLNSGALAKLKTREKKFKPIADHVNAAHHVSDPVAFPFQW 60

Query: 61  SWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKR 120
           SWRDVSIKVQNMRHQYLGVKQKIR+SDD+FNWKDGENHW+NF+K+KEVFGD+ L+ KGKR
Sbjct: 61  SWRDVSIKVQNMRHQYLGVKQKIRISDDEFNWKDGENHWENFLKYKEVFGDVELESKGKR 120

Query: 121 LVFGNSAAVGFDGSEDLEFGIGVDSDDLEEEE-EEEEEEEEEDEDLKGREQGGGKDDGHG 180
           L+  N    G+ G    + G+ +D +D EEEE EEEEEEEEE E+  G   GG  +   G
Sbjct: 121 LLCENVDVFGYCG----DLGVEIDCEDSEEEEGEEEEEEEEELEEEDGDGDGGSINTDIG 180

Query: 181 G-GREVVEVVGNEGKCAGFGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKREEQ 240
             G E+ E  G  G   GFG  G S+  K KKG G+ +RLG+VG  VLELRD+  KREE+
Sbjct: 181 EVGEEIKESDGELGD-LGFGMTGKSKKNK-KKGLGVMRRLGLVGAGVLELRDVMMKREER 240

Query: 241 RRDRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFENRM 300
           RR+R FRREK E +REE     E +KEK   E+E+ LD RE E+EER  +W +REFE R+
Sbjct: 241 RREREFRREKGEEKREE----GEFRKEKRRIEQEDWLDNREFELEERHSRWAKREFERRV 300

Query: 301 RMEREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQILGVI 360
           R+EREF EERR+RMR+EEK EEEEMEWRER+V +QIEHEKQMMQMQAEA QNQ+Q+LG++
Sbjct: 301 RLEREFAEERRRRMRVEEKREEEEMEWRERMVGLQIEHEKQMMQMQAEACQNQIQVLGMM 360

Query: 361 ARLLCQYFGSAND----GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 406
           AR +CQ+FGSAND    GLG+LPPQ+LQNLQHPGEL DNGKPDANSPSEF+
Sbjct: 361 ARFVCQFFGSANDGLGGGLGSLPPQILQNLQHPGELGDNGKPDANSPSEFI 401

[Close]

BLAST of Lsi05G003020 vs. NCBI nr
Match: gi|694392671|ref|XP_009371803.1| (PREDICTED: stress response protein NST1-like [Pyrus x bretschneideri])

HSP 1 Score: 453.4 bits (1165), Expect = 4.3e-124
Identity = 266/414 (64.25%), Postives = 324/414 (78.26%), Query Frame = 1


Query: 1   MKRKKWSEQEEETLLSKYSELLSCGTLAKLKTREKKFKPIADHVNSVHHLQDPLTFPFRW 60
           MKRKKWSE EE+TLL+ YS+L SCG LAKLKTREKKFKPIADHVNS HHL+DP+TFPFRW
Sbjct: 1   MKRKKWSELEEQTLLTNYSDLHSCGALAKLKTREKKFKPIADHVNSAHHLRDPVTFPFRW 60

Query: 61  SWRDVSIKVQNMRHQYLGVKQKIRLSDDDFNWKDGENHWQNFMKFKEVFGDLPLDLKGKR 120
           SWRDVSIKVQNMRHQYLGVKQKIR+S D+FNWKDGENHW+NF+++KEVFGD+ LD++GKR
Sbjct: 61  SWRDVSIKVQNMRHQYLGVKQKIRVSKDEFNWKDGENHWENFLRYKEVFGDVELDVRGKR 120

Query: 121 LVFGNSAAVGFDGSEDLEFGIGVDSDDLEEEEEEEEEEE-EEDEDLKGREQGGGKDDGHG 180
                +  V F    DL  G G+D DDLEEEE++E+  + EE ED +  E  GG +  +G
Sbjct: 121 GCESENLDV-FGDCGDL--GFGIDCDDLEEEEDDEDGVQLEEGEDGEEEESSGGGEGDNG 180

Query: 181 ----GGREVVEVVGNEGKCAGFGEIGVSETRKSKKGSGLNKRLGMVGLRVLELRDMAAKR 240
               G  E  E+VG        GE+G ++ RK  K  GL++RLG+V  +VL+LRD+  KR
Sbjct: 181 VEELGRSEGGELVGERA----IGEVGFAQKRKLGK-VGLHRRLGLVSAQVLDLRDVVVKR 240

Query: 241 EEQRRDRAFRREKNEAEREEKMKNTELKKEKVMNEKEEKLDKRELEIEERELQWRQREFE 300
           EE+RR+R  RREK+E EREEK K  E ++EK  NE+E+ L+ RELE+EERE+ W +REF+
Sbjct: 241 EERRRERECRREKSEVEREEKRKEIEFRREKRRNEREDWLEDRELELEEREVMWARREFD 300

Query: 301 NRMRMEREFVEERRKRMRMEEKMEEEEMEWRERIVEMQIEHEKQMMQMQAEAFQNQMQIL 360
            R+RMER+  +ERR+RMRMEEK EEEE+EWRER++ +QIEHEKQMMQM AEA  NQMQIL
Sbjct: 301 KRLRMERDLDDERRRRMRMEEKREEEELEWRERMMGLQIEHEKQMMQMHAEACHNQMQIL 360

Query: 361 GVIARLLCQYFGSAND----GLGALPPQVLQNLQHPGELDDNGKPDANSPSEFL 406
           GV+ARL+CQ FGS ND    GLG+LPPQVLQNLQHPG+L DNGKP+ NSPSEFL
Sbjct: 361 GVMARLVCQSFGSVNDGLGGGLGSLPPQVLQNLQHPGDLGDNGKPEDNSPSEFL 406

The following BLAST results are available for this feature:

BLAST of Lsi05G003020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G003020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB45_CUCSA	2.3e-193	90.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G365940 PE=4 SV=1	[more]
W9SQE5_9ROSA	9.8e-128	66.42	Uncharacterized protein OS=Morus notabilis GN=L484_027213 PE=4 SV=1	[more]
A0A061FRU0_THECC	1.1e-123	62.71	Receptor-type tyrosine-protein phosphatase U OS=Theobroma cacao GN=TCM_045444 PE...	[more]
A0A0D2TX80_GOSRA	3.3e-123	62.68	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G294600 PE=4 SV=1	[more]
B9H398_POPTR	1.8e-121	61.86	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s08640g PE=4 SV=1	[more]

BLAST of Lsi05G003020 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G003020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114487\|ref\|XP_008457076.1\|	3.5e-195	91.24	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like [Cucum...	[more]
gi\|778680968\|ref\|XP_011651431.1\|	3.3e-193	90.71	PREDICTED: uncharacterized protein KIAA1211 homolog [Cucumis sativus]	[more]
gi\|645246178\|ref\|XP_008229232.1\|	9.8e-129	67.56	PREDICTED: trichohyalin-like [Prunus mume]	[more]
gi\|703147290\|ref\|XP_010109015.1\|	1.4e-127	66.42	hypothetical protein L484_027213 [Morus notabilis]	[more]
gi\|694392671\|ref\|XP_009371803.1\|	4.3e-124	64.25	PREDICTED: stress response protein NST1-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003020.1	Lsi05G003020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 234..335 score: -coord: 141..168 scor
None	No IPR available	PANTHER	PTHR37076	FAMILY NOT NAMED	coord: 1..405 score: 1.4E
None	No IPR available	PANTHER	PTHR37076:SF2	SUBFAMILY NOT NAMED	coord: 1..405 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003020	Cla013166	Watermelon (97103) v1	lsiwmB361
Lsi05G003020	MELO3C020294	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003020	ClCG05G010910	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003020	MELO3C020294.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003020	Cla97C05G093210	Watermelon (97103) v2	lsiwmbB329
Lsi05G003020	Bhi01G001344	Wax gourd	lsiwgoB431
Lsi05G003020	CsaV3_3G021670	Cucumber (Chinese Long) v3	cuclsiB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003020	Silver-seed gourd	carlsiB158
Lsi05G003020	Silver-seed gourd	carlsiB700
Lsi05G003020	Cucumber (Gy14) v1	cgylsiB322
Lsi05G003020	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003020	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003020	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003020	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003020	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003020	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003020	Cucumber (Gy14) v2	cgyblsiB199