Lsi05G002890 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G002890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionE3 ubiquitin-protein ligase
Locationchr05 : 3716936 .. 3718754 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCGTCCCAAAAGAAAGGACTTTGATGATGAAGAAAAAGAAAGTCTTCTTTTCAGTTTTTACGGAGTGAAAGAGGAGAAGAGGACTGATTTTGCCATTCTTCATAGTTGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGGAAGAAAAAATGGCGGATTCTCGAGCATCAGACGGCGAAACTGAGGGGCGACGTTTCGTCAATAGTAGCAGAGGCAAGAACGAGGCGATGAACGTCATATTCACTGATCCTCAGATTCTCGATTGCTATATTTGTTGCGAACGCTTGTCAATTCCTGTTTTCCAGGTCCGATTAACCTCTTTTCTGCTTATATTTTTGCTTTAAATTGTGTTTATTGCTTATCTGGATGTCTCTGATGCTTTGTTCTTCTCGCCCGTTTTGGTTTCTGTAACTTGGAATACATTAGTTTCGCTTGTGTGTGTTTGTTGCATTTGACGATTTTGAAATCCCCTTTTCTATTAGGTTTTTATTCTCTATTTTTGAAGTTTATTGTGTAGACTGTGGATTGCCATTGGAAGTAATGCATTGAAATTCTTAAATGTTTTGATGTAAATAGTCTTAGAAAATAGGAGAGTATTCTAGATATTATGAATTCTTAATTGCTTACCTTGCTAATATTATCTTGAGTAAATGTTAGAATCAAGCCACAGTTTATTTGATTTTATCTTCACCTTTTCAATTGTATGGATTATTGGATTTTCTTCACTGTTTAGAAACAATGAACTTGAAGGGTTTGGATATAGAAGAAAATGAAGTTTACATTTGTGTTTATAATCTCTTATTTTGTTATTTATGAGTCTATTGTATCTGTATTTCATATAAACATATACTTTGGTGTTGAATGAACTAGTGTGAGAATGGGCATATTTCTTGCTCTAGCTGCTGCACCAAAATTCAGAACAAATGCCCTAGCTGCAGCTTGGCAATTGGCTACATACGTTGCAGGGCAATTGAGAAGGTTTTGGAATCAATCAAGATACCGTGCCACAACGCGATATATGGATGCAAAATGACGATGAGTTTGAACCAGATAAATGACCATGAGCCCTTGTGCACATACGAACCGTGCTCGTGCCCTTTGGACGATTGCACATTTGTTGGTTCAGCTGAGCAGTTGGGCTTACACTTCAGCAAAAATCATAAAAACTCAGCCAAAAGCTTCTCATACAATGCGAGGTTCACTATATGCTTGAACAATGGTGATAGTCATCGTATCCTTCAAGCAGAGAACGATGGCATTTTGTTCTTCCTCTCTTACACGTTTGAAATTTTCGGGAATGCGGTAACTGTGAATCGGATTGGACCTTCGTCGTCTGAGAGAAAGTTCTGTTACGAAATTAAAGCGAAAACAGAAGGGAGTGTTCTTTCTTTACAATCAATAGCAAAGGAGATCCAAGGTTGGAGTAAAGTTCCTCCTTCCAAGGGATCGCTTTTGATTCCGAACGAGTACTTTGGATCTTCAACCCAGACGATCTTGGAGATTCGCATTTGGCCTGCACACTAAAGACAAACACTGGAGATCGACACAGGTGCACATACATTTGCAAGAAAGCTGATTATTTATAAACTGAGTTAAATATTGTTGGCTGGTTGTGATCTTGGTTGCTTGAACCTTGCATCTTTTGTGCTTTTTTGCAAATGACTTGGTGTTTACTTTTGTACATATTATCATCTTTTGCCTTAGATAGATATCTAGAAATAGAAAGTATTGCATTTTTTTTTAATTTAGGGAAGATGTATGAGTAATTTGATTGATTGATCTAAGGTCAAAATGTTATTTGATCTCGTTTTATAACC

mRNA sequence

TTTCGTCCCAAAAGAAAGGACTTTGATGATGAAGAAAAAGAAAGTCTTCTTTTCAGTTTTTACGGAGTGAAAGAGGAGAAGAGGACTGATTTTGCCATTCTTCATAGTTGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGGAAGAAAAAATGGCGGATTCTCGAGCATCAGACGGCGAAACTGAGGGGCGACGTTTCGTCAATAGTAGCAGAGGCAAGAACGAGGCGATGAACGTCATATTCACTGATCCTCAGATTCTCGATTGCTATATTTGTTGCGAACGCTTGTCAATTCCTGTTTTCCAGTGTGAGAATGGGCATATTTCTTGCTCTAGCTGCTGCACCAAAATTCAGAACAAATGCCCTAGCTGCAGCTTGGCAATTGGCTACATACGTTGCAGGGCAATTGAGAAGGTTTTGGAATCAATCAAGATACCGTGCCACAACGCGATATATGGATGCAAAATGACGATGAGTTTGAACCAGATAAATGACCATGAGCCCTTGTGCACATACGAACCGTGCTCGTGCCCTTTGGACGATTGCACATTTGTTGGTTCAGCTGAGCAGTTGGGCTTACACTTCAGCAAAAATCATAAAAACTCAGCCAAAAGCTTCTCATACAATGCGAGGTTCACTATATGCTTGAACAATGGTGATAGTCATCGTATCCTTCAAGCAGAGAACGATGGCATTTTGTTCTTCCTCTCTTACACGTTTGAAATTTTCGGGAATGCGGTAACTGTGAATCGGATTGGACCTTCGTCGTCTGAGAGAAAGTTCTGTTACGAAATTAAAGCGAAAACAGAAGGGAGTGTTCTTTCTTTACAATCAATAGCAAAGGAGATCCAAGGTTGGAGTAAAGTTCCTCCTTCCAAGGGATCGCTTTTGATTCCGAACGAGTACTTTGGATCTTCAACCCAGACGATCTTGGAGATTCGCATTTGGCCTGCACACTAAAGACAAACACTGGAGATCGACACAGGTGCACATACATTTGCAAGAAAGCTGATTATTTATAAACTGAGTTAAATATTGTTGGCTGGTTGTGATCTTGGTTGCTTGAACCTTGCATCTTTTGTGCTTTTTTGCAAATGACTTGGTGTTTACTTTTGTACATATTATCATCTTTTGCCTTAGATAGATATCTAGAAATAGAAAGTATTGCATTTTTTTTTAATTTAGGGAAGATGTATGAGTAATTTGATTGATTGATCTAAGGTCAAAATGTTATTTGATCTCGTTTTATAACC

Coding sequence (CDS)

ATGGCGGATTCTCGAGCATCAGACGGCGAAACTGAGGGGCGACGTTTCGTCAATAGTAGCAGAGGCAAGAACGAGGCGATGAACGTCATATTCACTGATCCTCAGATTCTCGATTGCTATATTTGTTGCGAACGCTTGTCAATTCCTGTTTTCCAGTGTGAGAATGGGCATATTTCTTGCTCTAGCTGCTGCACCAAAATTCAGAACAAATGCCCTAGCTGCAGCTTGGCAATTGGCTACATACGTTGCAGGGCAATTGAGAAGGTTTTGGAATCAATCAAGATACCGTGCCACAACGCGATATATGGATGCAAAATGACGATGAGTTTGAACCAGATAAATGACCATGAGCCCTTGTGCACATACGAACCGTGCTCGTGCCCTTTGGACGATTGCACATTTGTTGGTTCAGCTGAGCAGTTGGGCTTACACTTCAGCAAAAATCATAAAAACTCAGCCAAAAGCTTCTCATACAATGCGAGGTTCACTATATGCTTGAACAATGGTGATAGTCATCGTATCCTTCAAGCAGAGAACGATGGCATTTTGTTCTTCCTCTCTTACACGTTTGAAATTTTCGGGAATGCGGTAACTGTGAATCGGATTGGACCTTCGTCGTCTGAGAGAAAGTTCTGTTACGAAATTAAAGCGAAAACAGAAGGGAGTGTTCTTTCTTTACAATCAATAGCAAAGGAGATCCAAGGTTGGAGTAAAGTTCCTCCTTCCAAGGGATCGCTTTTGATTCCGAACGAGTACTTTGGATCTTCAACCCAGACGATCTTGGAGATTCGCATTTGGCCTGCACACTAA

Protein sequence

MADSRASDGETEGRRFVNSSRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDDCTFVGSAEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAVTVNRIGPSSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVPPSKGSLLIPNEYFGSSTQTILEIRIWPAH
Homology
[Close]
BLAST of Lsi05G002890 vs. Swiss-Prot
Match: SIL10_ARATH (E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-52
Identity = 104/259 (40.15%), Postives = 149/259 (57.53%), Query Frame = 1 

Query: 15  RFVNS---SRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKC 74
           +FVNS   S  K+  ++V   DP +LDC ICCE L IP+FQC+NGH++C+ CCTK++N+C
Sbjct: 86  KFVNSQSSSSSKDSPLSVTLLDPDVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNRC 145

Query: 75  PSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDD 134
           PSC+L IGY+RCRA+EKV+E+ ++ C NA YGCK + S      HE +C + PCSCP+ D
Sbjct: 146 PSCTLPIGYVRCRAMEKVIEASRVSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPILD 205

Query: 135 CTFVGSAEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFE 194
           C + G  + L  H    HK+   SF +N R TI L+      ILQ ENDG +  +     
Sbjct: 206 CHYTGYYKDLNNHVRAEHKDDLISFVWNTRLTISLDLNKKTTILQEENDGHVIVVQVFRA 265

Query: 195 IFGNAVTVNRIGP-SSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVPPSKGSLLIPN 254
           +    V+V+ I P +    +    +   T  S+L    + K IQ  +   P  G +LIP+
Sbjct: 266 LHAVYVSVSCIAPLTPGVGRLSCRLAKITVDSLLKQGFMVKNIQKVTNEHPEDGFMLIPS 325

Query: 255 EYFGSSTQTILEIRIWPAH 270
             F  +    L ++IW  H
Sbjct: 326 YLFSGNDN--LNLQIWIGH 342

[Close]
BLAST of Lsi05G002890 vs. Swiss-Prot
Match: SINL6_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-41
Identity = 95/250 (38.00%), Postives = 143/250 (57.20%), Query Frame = 1 

Query: 6   ASDGETEGRRFVNSSRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCT 65
           +S    +GR+ V+ +R      + + TD  ILDC IC + L IPVFQC NGH++CSSCC 
Sbjct: 18  SSISSDDGRKRVDKTR------SAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSCCP 77

Query: 66  KIQNKCPSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPC 125
           K++NKCP+C+L +G+IRCRA+E+VLES+ +PC  A  GC  T+   + + HE +C + PC
Sbjct: 78  KLRNKCPACALPVGHIRCRAMERVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPC 137

Query: 126 SCPLDDCTFVGSAEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRIL--QAENDGIL 185
           SCP+  C + GS + L  H+   H   + ++S+N    I      S +IL  +     +L
Sbjct: 138 SCPVQGCNYTGSYKDLYEHYDLTHSTGSTAYSFNGVSYIAAMMFISDKILIERVYEKKLL 197

Query: 186 FFLSYTFEIFGNAVTVNRIGPSSSE-RKFCYEIKAKT-EGSVLSLQS-IAKEIQGWSKVP 245
           F +    E  G  V+V+ I PS+ E  +F Y +   T EG  ++ QS   K++   S   
Sbjct: 198 FVVQCFEEPCGVYVSVSCIAPSAPEVGEFSYGLLYTTWEGVTMTYQSPKVKKVLKVSSQR 257

Query: 246 PSKGSLLIPN 251
           P    +LIP+
Sbjct: 258 PKDSFMLIPH 261

[Close]
BLAST of Lsi05G002890 vs. Swiss-Prot
Match: SINL7_ARATH (E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.1e-39
Identity = 94/261 (36.02%), Postives = 138/261 (52.87%), Query Frame = 1 

Query: 11  TEGRRFVNSSRGKNEAM--NVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQ 70
           ++ R+  +S   K +A   + +  D +ILDC IC E  +IP+FQC+NGH++CSSCC K+ 
Sbjct: 21  SQKRQLSSSDAAKRDAKKRSTMLMDLEILDCPICYEAFTIPIFQCDNGHLACSSCCPKLN 80

Query: 71  NKCPSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCP 130
           NKCP+C+  +G+ RCRA+E VLESI IPC NA  GCK  +S  +   HE  C +  C+CP
Sbjct: 81  NKCPACTSPVGHNRCRAMESVLESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACP 140

Query: 131 LDDCTFVGSAEQLGLHFSKNHK--NSAKSFSYNARFTICLNNGDSHRILQAENDGILFFL 190
             DC +  S + L  H+   H   N   +F  +   ++ +N      I        LF +
Sbjct: 141 ALDCNYTSSYKDLYTHYRITHMEINQINTFICDIPLSVRMNISKKILIRTEHLTNHLFAV 200

Query: 191 SYTFEIFGNAVTVNRIGPSSSE-RKFCYEIKAKTEGSVLSLQS-IAKEIQGWSKVPPSKG 250
               E +G  VTV+ I PSS E  ++ Y +    +G  +  QS   K +   S   P + 
Sbjct: 201 QCFREPYGVYVTVSCIAPSSPELSQYSYALSYTVDGHTVIYQSPEVKRVLKLSFQTPQEN 260

Query: 251 SLLIPNEYFGSSTQTILEIRI 266
            +LIPN         +LE+RI
Sbjct: 261 FMLIPNSLLRGD---VLEMRI 278

[Close]
BLAST of Lsi05G002890 vs. Swiss-Prot
Match: SINL9_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana GN=At5g37910 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-37
Identity = 84/234 (35.90%), Postives = 124/234 (52.99%), Query Frame = 1 

Query: 23  KNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIR 82
           K +   ++  D  ILDC ICCE L+ P+FQC+NGH++C SCC K+ NKCP+C+L +G+ R
Sbjct: 22  KRQRSAIVLLDLDILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGHSR 81

Query: 83  CRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDDCTFVGSAEQLG 142
            RA+E VLESI IPC N  +GC  +    + + HE  C +  CSCP   C + GS + L 
Sbjct: 82  SRAMESVLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCPSSVCDYTGSYKDLY 141

Query: 143 LHFSKNHKN----SAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAVT 202
            H+   H      + K F     FT  +   D   I +     +L  +    E  G  VT
Sbjct: 142 AHYKLTHSTNIFWNIKRFRCANFFTTSMLISDKILIKRVHEKKLLLAVQCFREPCGVYVT 201

Query: 203 VNRIGPSSSE-RKFCYEIKAKTEGSVLSLQS-IAKEIQGWSKVPPSKGSLLIPN 251
           V+ I PS+ E  +F Y++    +G  ++ +S   K +   S   P +  +LIP+
Sbjct: 202 VSFIAPSAPEVGEFSYQLSYNVDGHTVTYESPEVKRVCKVSIETPQENFMLIPH 255

[Close]
BLAST of Lsi05G002890 vs. Swiss-Prot
Match: SINL4_ARATH (E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana GN=At1g66650 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.9e-35
Identity = 89/247 (36.03%), Postives = 128/247 (51.82%), Query Frame = 1 

Query: 28  NVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIRCRAIE 87
           +V   +  +L+C  C + L  P+FQC NGH++C  CC K++ +C  C L IG +RCRA+E
Sbjct: 75  SVTLPNSNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRCRAME 134

Query: 88  KVLESIKIPCHNAIYGCKMTMSL-NQINDHEPLCTYEPCSCPLDDCTFVGSAEQLGLHFS 147
           KV+++  + C NAIYGCK + +  NQ+  HE +C + PCSCP+ DC ++G  + L  HF 
Sbjct: 135 KVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPIKDCNYIGFYKDLINHFR 194

Query: 148 KNHKNS---AKSFSYN--ARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAVTVNR 207
             HK S     SF ++    F + L++ D   I   E  G LF +       G   TV+ 
Sbjct: 195 ATHKVSPGDINSFVFDRPVIFGLDLDSSDKMVIFVEEKQGNLFVVQGFIGSHGVYATVSH 254

Query: 208 IGPSSSE-RKFCYEIKAKTEGSVLSLQSIAKEIQGW--SKVPPSKGSLLIPNEYFGSSTQ 266
           I P   E RKF   +      S L L    K IQ     +  P +  LLIP+ Y  +   
Sbjct: 255 IAPMVPEVRKFSCSLARLRPYSTLRLGLEVKNIQKLRSQEEQPQEDFLLIPS-YMVNGDH 314

[Close]
BLAST of Lsi05G002890 vs. TrEMBL
Match: A0A0A0L9Z6_CUCSA (E3 ubiquitin-protein ligase OS=Cucumis sativus GN=Csa_3G185660 PE=3 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 4.8e-131
Identity = 226/269 (84.01%), Postives = 241/269 (89.59%), Query Frame = 1 

Query: 1   MADSRASDGETEGRRFVNSSRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISC 60
           M DSR+SDG +E R  V S RG N  +NVIFTDPQILDCYICCE LSIPVFQCENGHI+C
Sbjct: 1   MEDSRSSDGGSERRSSVISRRGTNGTLNVIFTDPQILDCYICCEPLSIPVFQCENGHIAC 60

Query: 61  SSCCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLC 120
           SSCCTK QNKCPSC+LAIGYIRCRAIEKVLESIK+PC NAIYGCK  M LN INDHE LC
Sbjct: 61  SSCCTKAQNKCPSCTLAIGYIRCRAIEKVLESIKLPCQNAIYGCKTVMGLNLINDHESLC 120

Query: 121 TYEPCSCPLDDCTFVGSAEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAEND 180
            YEPCSCPLD+CTFVGS EQLGLHF+K HK+SAK FSYN RFTICLNNGD+HRIL+AEND
Sbjct: 121 RYEPCSCPLDNCTFVGSTEQLGLHFTKKHKDSAKIFSYNTRFTICLNNGDTHRILKAEND 180

Query: 181 GILFFLSYTFEIFGNAVTVNRIGPSSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVP 240
           G+LFFLSYTFEIFGNAVT+NRIGP SSE+KFCYEIKAKT GSVLSLQSIAKEIQG  KVP
Sbjct: 181 GVLFFLSYTFEIFGNAVTMNRIGPLSSEKKFCYEIKAKTLGSVLSLQSIAKEIQGLIKVP 240

Query: 241 PSKGSLLIPNEYFGSSTQTILEIRIWPAH 270
           PSKGSLLIPNEYFGSSTQT+LEI IWPAH
Sbjct: 241 PSKGSLLIPNEYFGSSTQTMLEISIWPAH 269

[Close]
BLAST of Lsi05G002890 vs. TrEMBL
Match: B9T323_RICCO (E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_0326980 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.4e-69
Identity = 132/245 (53.88%), Postives = 163/245 (66.53%), Query Frame = 1 

Query: 23  KNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIR 82
           +N A+ V  TDP++LDC IC E LSIPVFQCENGH +CSSCC K+ +KCPSCSL IGY R
Sbjct: 106 RNAAICVTLTDPEVLDCPICYECLSIPVFQCENGHTACSSCCRKLAHKCPSCSLPIGYNR 165

Query: 83  CRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDDCTFVGSAEQLG 142
           CRAIEKVLES+K+PCHN  YGCK  +S ++  DH+ +C   PCSCPL  C+FVGS+ QL 
Sbjct: 166 CRAIEKVLESVKLPCHNLKYGCKEMVSYSKKLDHDKICNNAPCSCPLSGCSFVGSSRQLY 225

Query: 143 LHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAVTVNRI 202
            HFS  HK SA  F YN  F +     D   ILQ E +G++FFL  T EI GN +TVN +
Sbjct: 226 QHFSIKHKGSAAPFRYNITFPVFFTLNDKSLILQEEKEGVVFFLKNTAEILGNVITVNCL 285

Query: 203 GPSSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVPP-SKGSLLIPNEYFGSSTQTIL 262
           G  SS+  + YE+ A+ EGS L  QS  K IQ  +   P S   L+IP  +FGS  Q  L
Sbjct: 286 GGPSSKGGYFYELAARMEGSNLKFQSFTKNIQKVNHDDPHSDTFLIIPGSFFGSYGQISL 345

Query: 263 EIRIW 267
           ++ IW
Sbjct: 346 DLCIW 350

[Close]
BLAST of Lsi05G002890 vs. TrEMBL
Match: W9S0Z7_9ROSA (E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_027128 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.2e-66
Identity = 132/263 (50.19%), Postives = 171/263 (65.02%), Query Frame = 1 

Query: 3   DSRASDGETEGRRFVNSSRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSS 62
           DS ++D   E  R ++++   + +++V  TDP +LDC IC E L++PVFQCENGHI+CSS
Sbjct: 90  DSISADANQEDPRPLSTN--SDRSISVFLTDPDVLDCCICFEALTVPVFQCENGHIACSS 149

Query: 63  CCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTY 122
           CCTK+ NKCPSCS  IGY RCRAIEKVLES+KI C N  YGCK  +S ++I DHE  CT+
Sbjct: 150 CCTKLGNKCPSCSWPIGYNRCRAIEKVLESVKIACQNKQYGCKEMVSYSEIKDHETTCTH 209

Query: 123 EPCSCPLDDCTFVGSAEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAENDGI 182
            PCSCPL  C F+ SA+QL  HF   H +SA  F YN  FT+ LN GD   +LQ  + G 
Sbjct: 210 APCSCPLTSCNFISSAKQLYQHFRSQHADSAVLFQYNCDFTVTLNEGDKFLVLQERDGGG 269

Query: 183 LFFLSYTFEIFGNAVTVNRIGPSSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVPPS 242
           LF L+   E  GN V+V+ IGP S  + + Y + AK +G+ L L+S A   QG +    S
Sbjct: 270 LFILNNETETLGNLVSVSCIGPYSFGKSY-YNLLAKCDGNTLRLESFATCTQGQADYSLS 329

Query: 243 KGSLLIPNEYFGSSTQTILEIRI 266
              LLIP  +FGSS Q  L++ I
Sbjct: 330 SVYLLIPPGFFGSSGQLKLDLFI 349

[Close]
BLAST of Lsi05G002890 vs. TrEMBL
Match: A0A067FAH4_CITSI (E3 ubiquitin-protein ligase OS=Citrus sinensis GN=CISIN_1g020280mg PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.1e-65
Identity = 128/243 (52.67%), Postives = 156/243 (64.20%), Query Frame = 1 

Query: 23  KNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIR 82
           +N   +V  TDP++ DC IC E L+ PVFQCENGHI+CS+CC+KI NKCPSC   IGY R
Sbjct: 72  RNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNR 131

Query: 83  CRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDDCTFVGSAEQLG 142
           CRAIEKVLES+K+ C N+ YGCK+TMS  + +DHE +C + PCSCP+ DC FVGSA  L 
Sbjct: 132 CRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLY 191

Query: 143 LHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAVTVNRI 202
            HFS  HKNSA  F YN    + LN  +   +LQ E DG+LF LS   E  G+ ++V+ I
Sbjct: 192 KHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCI 251

Query: 203 GPSSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVPPSKGSLLIPNEYFGSSTQTILE 262
            PS     F Y I A   GS +  QS  K IQ     PPS G LL+P E FGSS    LE
Sbjct: 252 APSCKGCLF-YSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLE 311

Query: 263 IRI 266
           + I
Sbjct: 312 LCI 313

[Close]
BLAST of Lsi05G002890 vs. TrEMBL
Match: V4UW18_9ROSI (E3 ubiquitin-protein ligase OS=Citrus clementina GN=CICLE_v10012174mg PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.1e-65
Identity = 128/243 (52.67%), Postives = 156/243 (64.20%), Query Frame = 1 

Query: 23  KNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIR 82
           +N   +V  TDP++ DC IC E L+ PVFQCENGHI+CS+CC+KI NKCPSC   IGY R
Sbjct: 72  RNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNR 131

Query: 83  CRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDDCTFVGSAEQLG 142
           CRAIEKVLES+K+ C N+ YGCK+TMS  + +DHE +C + PCSCP+ DC FVGSA  L 
Sbjct: 132 CRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLY 191

Query: 143 LHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAVTVNRI 202
            HFS  HKNSA  F YN    + LN  +   +LQ E DG+LF LS   E  G+ ++V+ I
Sbjct: 192 KHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCI 251

Query: 203 GPSSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVPPSKGSLLIPNEYFGSSTQTILE 262
            PS     F Y I A   GS +  QS  K IQ     PPS G LL+P E FGSS    LE
Sbjct: 252 APSCKGCLF-YSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLE 311

Query: 263 IRI 266
           + I
Sbjct: 312 LCI 313

[Close]
BLAST of Lsi05G002890 vs. TAIR10
Match: AT5G37930.1 (AT5G37930.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 208.0 bits (528), Expect = 7.3e-54
Identity = 104/259 (40.15%), Postives = 149/259 (57.53%), Query Frame = 1 

Query: 15  RFVNS---SRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKC 74
           +FVNS   S  K+  ++V   DP +LDC ICCE L IP+FQC+NGH++C+ CCTK++N+C
Sbjct: 86  KFVNSQSSSSSKDSPLSVTLLDPDVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNRC 145

Query: 75  PSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDD 134
           PSC+L IGY+RCRA+EKV+E+ ++ C NA YGCK + S      HE +C + PCSCP+ D
Sbjct: 146 PSCTLPIGYVRCRAMEKVIEASRVSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPILD 205

Query: 135 CTFVGSAEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFE 194
           C + G  + L  H    HK+   SF +N R TI L+      ILQ ENDG +  +     
Sbjct: 206 CHYTGYYKDLNNHVRAEHKDDLISFVWNTRLTISLDLNKKTTILQEENDGHVIVVQVFRA 265

Query: 195 IFGNAVTVNRIGP-SSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVPPSKGSLLIPN 254
           +    V+V+ I P +    +    +   T  S+L    + K IQ  +   P  G +LIP+
Sbjct: 266 LHAVYVSVSCIAPLTPGVGRLSCRLAKITVDSLLKQGFMVKNIQKVTNEHPEDGFMLIPS 325

Query: 255 EYFGSSTQTILEIRIWPAH 270
             F  +    L ++IW  H
Sbjct: 326 YLFSGNDN--LNLQIWIGH 342

[Close]
BLAST of Lsi05G002890 vs. TAIR10
Match: AT5G37870.1 (AT5G37870.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 171.4 bits (433), Expect = 7.6e-43
Identity = 95/250 (38.00%), Postives = 143/250 (57.20%), Query Frame = 1 

Query: 6   ASDGETEGRRFVNSSRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCT 65
           +S    +GR+ V+ +R      + + TD  ILDC IC + L IPVFQC NGH++CSSCC 
Sbjct: 18  SSISSDDGRKRVDKTR------SAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSCCP 77

Query: 66  KIQNKCPSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPC 125
           K++NKCP+C+L +G+IRCRA+E+VLES+ +PC  A  GC  T+   + + HE +C + PC
Sbjct: 78  KLRNKCPACALPVGHIRCRAMERVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPC 137

Query: 126 SCPLDDCTFVGSAEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRIL--QAENDGIL 185
           SCP+  C + GS + L  H+   H   + ++S+N    I      S +IL  +     +L
Sbjct: 138 SCPVQGCNYTGSYKDLYEHYDLTHSTGSTAYSFNGVSYIAAMMFISDKILIERVYEKKLL 197

Query: 186 FFLSYTFEIFGNAVTVNRIGPSSSE-RKFCYEIKAKT-EGSVLSLQS-IAKEIQGWSKVP 245
           F +    E  G  V+V+ I PS+ E  +F Y +   T EG  ++ QS   K++   S   
Sbjct: 198 FVVQCFEEPCGVYVSVSCIAPSAPEVGEFSYGLLYTTWEGVTMTYQSPKVKKVLKVSSQR 257

Query: 246 PSKGSLLIPN 251
           P    +LIP+
Sbjct: 258 PKDSFMLIPH 261

[Close]
BLAST of Lsi05G002890 vs. TAIR10
Match: AT5G37890.1 (AT5G37890.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-40
Identity = 94/261 (36.02%), Postives = 138/261 (52.87%), Query Frame = 1 

Query: 11  TEGRRFVNSSRGKNEAM--NVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQ 70
           ++ R+  +S   K +A   + +  D +ILDC IC E  +IP+FQC+NGH++CSSCC K+ 
Sbjct: 21  SQKRQLSSSDAAKRDAKKRSTMLMDLEILDCPICYEAFTIPIFQCDNGHLACSSCCPKLN 80

Query: 71  NKCPSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCP 130
           NKCP+C+  +G+ RCRA+E VLESI IPC NA  GCK  +S  +   HE  C +  C+CP
Sbjct: 81  NKCPACTSPVGHNRCRAMESVLESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACP 140

Query: 131 LDDCTFVGSAEQLGLHFSKNHK--NSAKSFSYNARFTICLNNGDSHRILQAENDGILFFL 190
             DC +  S + L  H+   H   N   +F  +   ++ +N      I        LF +
Sbjct: 141 ALDCNYTSSYKDLYTHYRITHMEINQINTFICDIPLSVRMNISKKILIRTEHLTNHLFAV 200

Query: 191 SYTFEIFGNAVTVNRIGPSSSE-RKFCYEIKAKTEGSVLSLQS-IAKEIQGWSKVPPSKG 250
               E +G  VTV+ I PSS E  ++ Y +    +G  +  QS   K +   S   P + 
Sbjct: 201 QCFREPYGVYVTVSCIAPSSPELSQYSYALSYTVDGHTVIYQSPEVKRVLKLSFQTPQEN 260

Query: 251 SLLIPNEYFGSSTQTILEIRI 266
            +LIPN         +LE+RI
Sbjct: 261 FMLIPNSLLRGD---VLEMRI 278

[Close]
BLAST of Lsi05G002890 vs. TAIR10
Match: AT5G37910.1 (AT5G37910.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 157.9 bits (398), Expect = 8.7e-39
Identity = 84/234 (35.90%), Postives = 124/234 (52.99%), Query Frame = 1 

Query: 23  KNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIR 82
           K +   ++  D  ILDC ICCE L+ P+FQC+NGH++C SCC K+ NKCP+C+L +G+ R
Sbjct: 22  KRQRSAIVLLDLDILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGHSR 81

Query: 83  CRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDDCTFVGSAEQLG 142
            RA+E VLESI IPC N  +GC  +    + + HE  C +  CSCP   C + GS + L 
Sbjct: 82  SRAMESVLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCPSSVCDYTGSYKDLY 141

Query: 143 LHFSKNHKN----SAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAVT 202
            H+   H      + K F     FT  +   D   I +     +L  +    E  G  VT
Sbjct: 142 AHYKLTHSTNIFWNIKRFRCANFFTTSMLISDKILIKRVHEKKLLLAVQCFREPCGVYVT 201

Query: 203 VNRIGPSSSE-RKFCYEIKAKTEGSVLSLQS-IAKEIQGWSKVPPSKGSLLIPN 251
           V+ I PS+ E  +F Y++    +G  ++ +S   K +   S   P +  +LIP+
Sbjct: 202 VSFIAPSAPEVGEFSYQLSYNVDGHTVTYESPEVKRVCKVSIETPQENFMLIPH 255

[Close]
BLAST of Lsi05G002890 vs. TAIR10
Match: AT1G66650.1 (AT1G66650.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-36
Identity = 89/247 (36.03%), Postives = 128/247 (51.82%), Query Frame = 1 

Query: 28  NVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIRCRAIE 87
           +V   +  +L+C  C + L  P+FQC NGH++C  CC K++ +C  C L IG +RCRA+E
Sbjct: 75  SVTLPNSNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRCRAME 134

Query: 88  KVLESIKIPCHNAIYGCKMTMSL-NQINDHEPLCTYEPCSCPLDDCTFVGSAEQLGLHFS 147
           KV+++  + C NAIYGCK + +  NQ+  HE +C + PCSCP+ DC ++G  + L  HF 
Sbjct: 135 KVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPIKDCNYIGFYKDLINHFR 194

Query: 148 KNHKNS---AKSFSYN--ARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAVTVNR 207
             HK S     SF ++    F + L++ D   I   E  G LF +       G   TV+ 
Sbjct: 195 ATHKVSPGDINSFVFDRPVIFGLDLDSSDKMVIFVEEKQGNLFVVQGFIGSHGVYATVSH 254

Query: 208 IGPSSSE-RKFCYEIKAKTEGSVLSLQSIAKEIQGW--SKVPPSKGSLLIPNEYFGSSTQ 266
           I P   E RKF   +      S L L    K IQ     +  P +  LLIP+ Y  +   
Sbjct: 255 IAPMVPEVRKFSCSLARLRPYSTLRLGLEVKNIQKLRSQEEQPQEDFLLIPS-YMVNGDH 314

[Close]
BLAST of Lsi05G002890 vs. NCBI nr
Match: gi|778679778|ref|XP_004140738.2| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis sativus])

HSP 1 Score: 475.3 bits (1222), Expect = 6.9e-131
Identity = 226/269 (84.01%), Postives = 241/269 (89.59%), Query Frame = 1 

Query: 1   MADSRASDGETEGRRFVNSSRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISC 60
           M DSR+SDG +E R  V S RG N  +NVIFTDPQILDCYICCE LSIPVFQCENGHI+C
Sbjct: 1   MEDSRSSDGGSERRSSVISRRGTNGTLNVIFTDPQILDCYICCEPLSIPVFQCENGHIAC 60

Query: 61  SSCCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLC 120
           SSCCTK QNKCPSC+LAIGYIRCRAIEKVLESIK+PC NAIYGCK  M LN INDHE LC
Sbjct: 61  SSCCTKAQNKCPSCTLAIGYIRCRAIEKVLESIKLPCQNAIYGCKTVMGLNLINDHESLC 120

Query: 121 TYEPCSCPLDDCTFVGSAEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAEND 180
            YEPCSCPLD+CTFVGS EQLGLHF+K HK+SAK FSYN RFTICLNNGD+HRIL+AEND
Sbjct: 121 RYEPCSCPLDNCTFVGSTEQLGLHFTKKHKDSAKIFSYNTRFTICLNNGDTHRILKAEND 180

Query: 181 GILFFLSYTFEIFGNAVTVNRIGPSSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVP 240
           G+LFFLSYTFEIFGNAVT+NRIGP SSE+KFCYEIKAKT GSVLSLQSIAKEIQG  KVP
Sbjct: 181 GVLFFLSYTFEIFGNAVTMNRIGPLSSEKKFCYEIKAKTLGSVLSLQSIAKEIQGLIKVP 240

Query: 241 PSKGSLLIPNEYFGSSTQTILEIRIWPAH 270
           PSKGSLLIPNEYFGSSTQT+LEI IWPAH
Sbjct: 241 PSKGSLLIPNEYFGSSTQTMLEISIWPAH 269

[Close]
BLAST of Lsi05G002890 vs. NCBI nr
Match: gi|659114528|ref|XP_008457096.1| (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis melo])

HSP 1 Score: 355.5 bits (911), Expect = 8.0e-95
Identity = 168/219 (76.71%), Postives = 185/219 (84.47%), Query Frame = 1 

Query: 1   MADSRASDGETEGRRFVNSSRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISC 60
           MADS++SDG +E R  V S RG N  MNVIFTDPQILDCYIC   LSIP+FQCEN HI+C
Sbjct: 1   MADSQSSDGGSERRSSVISRRGTNGTMNVIFTDPQILDCYICWNXLSIPIFQCENXHIAC 60

Query: 61  SSCCTKIQNKCPSCSLAIGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLC 120
           SSCCTK+QNKCPSC LAIGYIRCRAIEKVLESIK+PC NAIY CK  M LN IND E LC
Sbjct: 61  SSCCTKVQNKCPSCILAIGYIRCRAIEKVLESIKLPCKNAIYRCKTAMDLNLINDQETLC 120

Query: 121 TYEPCSCPLDDCTFVGSAEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAEND 180
            YEPCSCPLD+CTFVG AEQL LHFS+ HKNSAK FSYN RFTICLNNGD++RIL+AE+D
Sbjct: 121 RYEPCSCPLDNCTFVGLAEQLYLHFSRRHKNSAKHFSYNTRFTICLNNGDTYRILKAEDD 180

Query: 181 GILFFLSYTFEIFGNAVTVNRIGPSSSERKFCYEIKAKT 220
           G+LFFLSYTFEIFGNA+TVN IGP SSE+KF Y+I   T
Sbjct: 181 GVLFFLSYTFEIFGNAITVNWIGPLSSEKKFSYKINENT 219

[Close]
BLAST of Lsi05G002890 vs. NCBI nr
Match: gi|255583779|ref|XP_002532642.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Ricinus communis])

HSP 1 Score: 270.4 bits (690), Expect = 3.4e-69
Identity = 132/245 (53.88%), Postives = 163/245 (66.53%), Query Frame = 1 

Query: 23  KNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLAIGYIR 82
           +N A+ V  TDP++LDC IC E LSIPVFQCENGH +CSSCC K+ +KCPSCSL IGY R
Sbjct: 106 RNAAICVTLTDPEVLDCPICYECLSIPVFQCENGHTACSSCCRKLAHKCPSCSLPIGYNR 165

Query: 83  CRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDDCTFVGSAEQLG 142
           CRAIEKVLES+K+PCHN  YGCK  +S ++  DH+ +C   PCSCPL  C+FVGS+ QL 
Sbjct: 166 CRAIEKVLESVKLPCHNLKYGCKEMVSYSKKLDHDKICNNAPCSCPLSGCSFVGSSRQLY 225

Query: 143 LHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAVTVNRI 202
            HFS  HK SA  F YN  F +     D   ILQ E +G++FFL  T EI GN +TVN +
Sbjct: 226 QHFSIKHKGSAAPFRYNITFPVFFTLNDKSLILQEEKEGVVFFLKNTAEILGNVITVNCL 285

Query: 203 GPSSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVPP-SKGSLLIPNEYFGSSTQTIL 262
           G  SS+  + YE+ A+ EGS L  QS  K IQ  +   P S   L+IP  +FGS  Q  L
Sbjct: 286 GGPSSKGGYFYELAARMEGSNLKFQSFTKNIQKVNHDDPHSDTFLIIPGSFFGSYGQISL 345

Query: 263 EIRIW 267
           ++ IW
Sbjct: 346 DLCIW 350

[Close]
BLAST of Lsi05G002890 vs. NCBI nr
Match: gi|470135025|ref|XP_004303331.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 isoform X3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 261.5 bits (667), Expect = 1.6e-66
Identity = 126/249 (50.60%), Postives = 161/249 (64.66%), Query Frame = 1 

Query: 18  NSSRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLA 77
           +++   + ++++   DP +LDC ICCE L++PVFQCENGHI+CSSC TK++NKCPSCS  
Sbjct: 100 STTTATDRSISITLADPDVLDCPICCESLTVPVFQCENGHIACSSCSTKVKNKCPSCSWP 159

Query: 78  IGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDDCTFVGS 137
           IGY RCRAIEKVLESI+I C N  YGCK  M+ +  N+HE  C + PCSCP   C FV S
Sbjct: 160 IGYNRCRAIEKVLESIRISCQNIKYGCKEWMTCDNKNEHEKGCMHSPCSCPHSGCNFVSS 219

Query: 138 AEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAV 197
            +QL  HFS NH NSA  F YN  F+I +N  D   +LQ ENDG+LF L    EI GN V
Sbjct: 220 TKQLYQHFSSNHLNSATRFLYNCSFSITINFNDKFVVLQEENDGMLFILDNESEIIGNMV 279

Query: 198 TVNRIGPSSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVPPSKGSLLIPNEYFGSST 257
            ++ I P      F Y++ AK +G +L LQS     Q   + P S GSL+IP ++F S  
Sbjct: 280 RLSSIQPRFM-GGFFYDLTAKRKGCLLRLQSFTTSTQSHVRSPTSSGSLIIPGDFFSSCG 339

Query: 258 QTILEIRIW 267
           Q  L+I IW
Sbjct: 340 QLKLDICIW 347

[Close]
BLAST of Lsi05G002890 vs. NCBI nr
Match: gi|764606792|ref|XP_011467109.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 261.5 bits (667), Expect = 1.6e-66
Identity = 126/249 (50.60%), Postives = 161/249 (64.66%), Query Frame = 1 

Query: 18  NSSRGKNEAMNVIFTDPQILDCYICCERLSIPVFQCENGHISCSSCCTKIQNKCPSCSLA 77
           +++   + ++++   DP +LDC ICCE L++PVFQCENGHI+CSSC TK++NKCPSCS  
Sbjct: 100 STTTATDRSISITLADPDVLDCPICCESLTVPVFQCENGHIACSSCSTKVKNKCPSCSWP 159

Query: 78  IGYIRCRAIEKVLESIKIPCHNAIYGCKMTMSLNQINDHEPLCTYEPCSCPLDDCTFVGS 137
           IGY RCRAIEKVLESI+I C N  YGCK  M+ +  N+HE  C + PCSCP   C FV S
Sbjct: 160 IGYNRCRAIEKVLESIRISCQNIKYGCKEWMTCDNKNEHEKGCMHSPCSCPHSGCNFVSS 219

Query: 138 AEQLGLHFSKNHKNSAKSFSYNARFTICLNNGDSHRILQAENDGILFFLSYTFEIFGNAV 197
            +QL  HFS NH NSA  F YN  F+I +N  D   +LQ ENDG+LF L    EI GN V
Sbjct: 220 TKQLYQHFSSNHLNSATRFLYNCSFSITINFNDKFVVLQEENDGMLFILDNESEIIGNMV 279

Query: 198 TVNRIGPSSSERKFCYEIKAKTEGSVLSLQSIAKEIQGWSKVPPSKGSLLIPNEYFGSST 257
            ++ I P      F Y++ AK +G +L LQS     Q   + P S GSL+IP ++F S  
Sbjct: 280 RLSSIQPRFM-GGFFYDLTAKRKGCLLRLQSFTTSTQSHVRSPTSSGSLIIPGDFFSSCG 339

Query: 258 QTILEIRIW 267
           Q  L+I IW
Sbjct: 340 QLKLDICIW 347

The following BLAST results are available for this feature:
BLAST of Lsi05G002890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SIL10_ARATH1.3e-5240.15E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE... [more]
SINL6_ARATH1.3e-4138.00Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g... [more]
SINL7_ARATH2.1e-3936.02E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=... [more]
SINL9_ARATH1.5e-3735.90Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana GN=At5g... [more]
SINL4_ARATH1.9e-3536.03E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana GN=At1g66650 PE=... [more]
BLAST of Lsi05G002890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9Z6_CUCSA4.8e-13184.01E3 ubiquitin-protein ligase OS=Cucumis sativus GN=Csa_3G185660 PE=3 SV=1[more]
B9T323_RICCO2.4e-6953.88E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_0326980 PE=3 SV=1[more]
W9S0Z7_9ROSA3.2e-6650.19E3 ubiquitin-protein ligase OS=Morus notabilis GN=L484_027128 PE=3 SV=1[more]
A0A067FAH4_CITSI2.1e-6552.67E3 ubiquitin-protein ligase OS=Citrus sinensis GN=CISIN_1g020280mg PE=3 SV=1[more]
V4UW18_9ROSI2.1e-6552.67E3 ubiquitin-protein ligase OS=Citrus clementina GN=CICLE_v10012174mg PE=3 SV=1[more]
BLAST of Lsi05G002890 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G37930.17.3e-5440.15 Protein with RING/U-box and TRAF-like domains[more]
AT5G37870.17.6e-4338.00 Protein with RING/U-box and TRAF-like domains[more]
AT5G37890.11.2e-4036.02 Protein with RING/U-box and TRAF-like domains[more]
AT5G37910.18.7e-3935.90 Protein with RING/U-box and TRAF-like domains[more]
AT1G66650.11.1e-3636.03 Protein with RING/U-box and TRAF-like domains[more]
BLAST of Lsi05G002890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778679778|ref|XP_004140738.2|6.9e-13184.01PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis sativus][more]
gi|659114528|ref|XP_008457096.1|8.0e-9576.71PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SINA-like 10 [Cucumi... [more]
gi|255583779|ref|XP_002532642.1|3.4e-6953.88PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Ricinus communis][more]
gi|470135025|ref|XP_004303331.1|1.6e-6650.60PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 isoform X3 [Fragaria vesca s... [more]
gi|764606792|ref|XP_011467109.1|1.6e-6650.60PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 isoform X1 [Fragaria vesca s... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO:0007275multicellular organism development
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR0181217-in-absentia-prot_TRAF-dom
IPR013323SIAH-type domain
IPR013083Znf_RING/FYVE/PHD
IPR013010Znf_SIAH
IPR008974TRAF-like
IPR004162SINA-like
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0016874 ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G002890.1Lsi05G002890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 39..75
score: 8
IPR004162E3 ubiquitin-protein ligase SIN-likePANTHERPTHR10315SEVEN IN ABSENTIA HOMOLOGcoord: 3..266
score: 2.7
IPR008974TRAF-likeunknownSSF49599TRAF domain-likecoord: 92..254
score: 3.86
IPR013010Zinc finger, SIAH-typePROFILEPS51081ZF_SIAHcoord: 92..150
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 33..104
score: 4.
IPR013323SIAH-type domainGENE3DG3DSA:3.90.890.10coord: 105..145
score: 2.2
IPR018121Seven-in-absentia protein, TRAF-like domainPFAMPF03145Sinacoord: 81..234
score: 2.2
NoneNo IPR availablePANTHERPTHR10315:SF43E3 UBIQUITIN-PROTEIN LIGASEcoord: 3..266
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G002890Cla97C05G093120Watermelon (97103) v2lsiwmbB329
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G002890Cucumber (Gy14) v1cgylsiB144
Lsi05G002890Cucumber (Gy14) v1cgylsiB322
Lsi05G002890Cucurbita maxima (Rimu)cmalsiB249
Lsi05G002890Cucurbita maxima (Rimu)cmalsiB440
Lsi05G002890Cucurbita moschata (Rifu)cmolsiB237
Lsi05G002890Cucurbita moschata (Rifu)cmolsiB430
Lsi05G002890Cucurbita pepo (Zucchini)cpelsiB470
Lsi05G002890Cucurbita pepo (Zucchini)cpelsiB511
Lsi05G002890Wild cucumber (PI 183967)cpilsiB209
Lsi05G002890Cucumber (Chinese Long) v2culsiB211
Lsi05G002890Melon (DHL92) v3.5.1lsimeB368
Lsi05G002890Watermelon (Charleston Gray)lsiwcgB332
Lsi05G002890Watermelon (97103) v1lsiwmB361
Lsi05G002890Cucumber (Gy14) v2cgyblsiB198
Lsi05G002890Cucumber (Gy14) v2cgyblsiB199
Lsi05G002890Melon (DHL92) v3.6.1lsimedB384
Lsi05G002890Silver-seed gourdcarlsiB158
Lsi05G002890Silver-seed gourdcarlsiB700
Lsi05G002890Cucumber (Chinese Long) v3cuclsiB230
Lsi05G002890Cucumber (Chinese Long) v3cuclsiB231
Lsi05G002890Wax gourdlsiwgoB431