Lsi05G002540 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G002540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transporter-related family protein
Location	chr05 : 3262558 .. 3264589 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGGAGGAACGCTCCTTTGTTAATTCTGCAGACCGACAGCAGGTTCATCTTCTTTCTCTCTTATCTTTTCATATTTTGACAATCACTCGTATTTGTAAGTCGGCTAGTTATGGATTTTTCTTTCGGTTTATACACTCATTCGTTTGTTATCCTTTCCCATGATTTCGGTGTCTCGTGTTTGCTTTCCCGAATTGTAAACATAATCTACAGAACTTGAAATACTTATTCATAGATGCTAGGATCGGATTATCGTGTTTGTTGCATTTGTTCAGGGGGTTTTCCTGCAAATTTGTCAACTGGGTTTCTATTCGTCTTCTTCTTAATTTAATTGGGGGTTGCATTCTCGTTCTCAGCTGTTTGTTTTAGTTTGGTTTTGAAAACTTTTTTTTTATAAGTTTTGATTGAATGACTTGTTATGGGTTGACTGTAGTTATAGTGAAAAATTGAACATGGGTCAACTTTTTATGTTGCTATAATTGGTTTGGGAAATTGAATGAATGGTTTTAATATGTTGCGTACTTTGTTTATGGGTCTTTGATCTCAAACTTAGGTTTTGTTTGCTTTTGATGGACGAGACACCGTTGGTTTCAATTTGGAAGCTGAGGATGAACATGCCTTGCACTGTTTATTTTCTCCCATTGTTTACTATAAAGCTGCTACCTAAACAACGGGTCTAAAAAATCCATAAGGAGACTTACATATCAATATCCACTTTGATTTTCTGGAGATAAAAACAAGTCCAACAATACATCAAGAAGTTTGCAGGAAGTTTTTATGCCTTCAAGTTGTGTTCAACCCATCTCTTAATATCAATTATTCAAAGCAACAGGACATCTAAGTCTTTGAGTTCTTAGTTATCATCAAAGTTGGTTTTTAACACCATAGACATTGGCAACTATGTTATAAAGGTTGATCAATTTAAACTGTTATCGGAAGGAAAGAATAATGAGATCACTAGATTAGTGGAAATTTCTCGCATGAATTATTTACATGATACTTGTTTGTGATTAGTGTGGATTTCCTGTCTTGTAAGGTGGAGGATGGAGGTGAAAGTCCGAGGTACACTATTGACGAAGCTCTTGTATCCATGGGTTTTGGGAATTTCCAAATTCTTGTGCTTGCTTATGCTGGAATGGGATGGGTTTCAGAAGCTATGGAAATGATGTTACTCTCCTTTGTTGGACCTGCAGTTCAGTCTGCTTGGAGCCTTTCTCCCCATGAAGAGTCTTTGATCACCAGTGTGGTTTTTGCAGGCATGTTAGTTGGGGCCTATTCATGGGGCATAGTTTCTGATAAATATGGACGAAGGCAGGTCTCCTTTATTCTAATATCATTTCACTTTCATTAACATTTGTGTATGCTTGATGATGCGACTCCTTCCTCTTGTTAATGCAATATGTGCAATCTACTTGCATCCTTTGCTTCCTCTTCCATCTCAATGGTTCTTATGCTTCAGACTCAGAGATTTTTTTTTCTCTAACCTTTTGACTGATGCTCATAAAAGATTGTTTTGTATTCAGAACTTTGTAATTGAGTTTTTATGATATAGAATTGAACGTTTACGACAGCCATGATATTTCTATTTTTCTTGTTTTTGGTTTTGAACTTATCTTGTTCAAGGTAGATTTTTTCATAATGGAAAAAATCACATGTGTTGCTGGATTCCAAGTTCTTTTGCCCCAAATTGTATATCTTTGAATTTCTCTGCTATAATTTTTTTTCTTTCAGTCTTGGGGATCCTAGATTTCCTTTGTTTTTTCATTTTTAACTTTTCTCATTCAGGAAAGGTTTCTTCATTACAGCAACAATCACTTCCATTGCTGGATTTCTTAGTGCTTTTGCCCCAAATTATACATCTTTGTTAATTCTTCGCTGTCTAGTTGGCGTTGGGTTGGGAGGTGGCCCTGTACTTGCATCCTGGTTCTTGGAATTCATTCCTGCTCCTGAAAGAGGCACTTGGATGGTTATTTTTTCAGCATTCTGGACCGTTGGAACAATCCTTGAAGCTTCTTTGGCATGGGTATAA

mRNA sequence

ATGGAAATGGAGGAACGCTCCTTTGTTAATTCTGCAGACCGACAGCAGGTTCATCTTCTTTCTCTCTTATCTTTTCATATTTTGACAATCACTCGTATTTGTAATGTGGATTTCCTGTCTTGTAAGGTGGAGGATGGAGGTGAAAGTCCGAGGTACACTATTGACGAAGCTCTTGTATCCATGGGTTTTGGGAATTTCCAAATTCTTGTGCTTGCTTATGCTGGAATGGGATGGGTTTCAGAAGCTATGGAAATGATGTTACTCTCCTTTGTTGGACCTGCAGTTCAGTCTGCTTGGAGCCTTTCTCCCCATGAAGAGTCTTTGATCACCAGTGTGGTTTTTGCAGGCATGAAAGGTTTCTTCATTACAGCAACAATCACTTCCATTGCTGGATTTCTTAGTGCTTTTGCCCCAAATTATACATCTTTGTTAATTCTTCGCTGTCTAGTTGGCGTTGGGTTGGGAGGTGGCCCTGTACTTGCATCCTGGTTCTTGGAATTCATTCCTGCTCCTGAAAGAGGCACTTGGATGGTTATTTTTTCAGCATTCTGGACCGTTGGAACAATCCTTGAAGCTTCTTTGGCATGGGTATAA

Coding sequence (CDS)

ATGGAAATGGAGGAACGCTCCTTTGTTAATTCTGCAGACCGACAGCAGGTTCATCTTCTTTCTCTCTTATCTTTTCATATTTTGACAATCACTCGTATTTGTAATGTGGATTTCCTGTCTTGTAAGGTGGAGGATGGAGGTGAAAGTCCGAGGTACACTATTGACGAAGCTCTTGTATCCATGGGTTTTGGGAATTTCCAAATTCTTGTGCTTGCTTATGCTGGAATGGGATGGGTTTCAGAAGCTATGGAAATGATGTTACTCTCCTTTGTTGGACCTGCAGTTCAGTCTGCTTGGAGCCTTTCTCCCCATGAAGAGTCTTTGATCACCAGTGTGGTTTTTGCAGGCATGAAAGGTTTCTTCATTACAGCAACAATCACTTCCATTGCTGGATTTCTTAGTGCTTTTGCCCCAAATTATACATCTTTGTTAATTCTTCGCTGTCTAGTTGGCGTTGGGTTGGGAGGTGGCCCTGTACTTGCATCCTGGTTCTTGGAATTCATTCCTGCTCCTGAAAGAGGCACTTGGATGGTTATTTTTTCAGCATTCTGGACCGTTGGAACAATCCTTGAAGCTTCTTTGGCATGGGTATAA

Protein sequence

MEMEERSFVNSADRQQVHLLSLLSFHILTITRICNVDFLSCKVEDGGESPRYTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHEESLITSVVFAGMKGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAWV

Homology

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BLAST of Lsi05G002540 vs. Swiss-Prot
Match: OCT7_ARATH (Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.6e-62
Identity = 121/164 (73.78%), Postives = 135/164 (82.32%), Query Frame = 1


Query: 51  RYTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHEESLIT 110
           R+T+DEALV+MGFG FQI VLAYAGMGWV+EAMEMMLLSFVGPAVQS W+LS  +ESLIT
Sbjct: 7   RFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLIT 66

Query: 111 SVVFAGM-----------------KGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVG 170
           SVVFAGM                 KGF ITA +T +AGFLSAF+PNY  L+ILRCLVG+G
Sbjct: 67  SVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLG 126

Query: 171 LGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAWV 198
           LGGGPVLASW+LEFIPAP RGTWMV+FSAFWTVGTI EASLAW+
Sbjct: 127 LGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWL 170

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BLAST of Lsi05G002540 vs. Swiss-Prot
Match: SVOP_CAEEL (Putative transporter svop-1 OS=Caenorhabditis elegans GN=svop-1 PE=3 SV=5)

HSP 1 Score: 115.2 bits (287), Expect = 8.4e-25
Identity = 57/162 (35.19%), Postives = 93/162 (57.41%), Query Frame = 1


Query: 52  YTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHEESLITS 111
           +T+DEA+ ++GFG FQ+ +    GM W+++AMEMMLLS + PA+   W +S  +++L+T+
Sbjct: 67  FTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTT 126

Query: 112 VVFAGM-----------------KGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGL 171
            VF+GM                 KG   +  +  I G +S  +P++  LL  R L G G+
Sbjct: 127 CVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGI 186

Query: 172 GGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAW 197
           GG P   + + EF+P  +R   +V+  +FW +G + EA LA+
Sbjct: 187 GGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAY 228

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BLAST of Lsi05G002540 vs. Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.0e-23
Identity = 62/187 (33.16%), Postives = 99/187 (52.94%), Query Frame = 1


Query: 35  NVDFLSCKVEDGGESPR---------YTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEM 94
           +V   + +++DG   P+         + +++A+ ++GFG FQ  +    G+ W+++AMEM
Sbjct: 42  HVGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEM 101

Query: 95  MLLSFVGPAVQSAWSLSPHEESLITSVVFAGMK-----------------GFFITATITS 154
           M+LS + P +   W L   + +L+TSVVF GM                  G  I+   T 
Sbjct: 102 MILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTL 161

Query: 155 IAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGT 196
             G LSAFAP Y+ +L+LR LVG G+GG P   + + EF+P   R   +++   FW +GT
Sbjct: 162 YYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGT 221

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BLAST of Lsi05G002540 vs. Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.8e-23
Identity = 61/180 (33.89%), Postives = 96/180 (53.33%), Query Frame = 1


Query: 42  KVEDGGESPR---------YTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVG 101
           +++DG   P+         + +++A+ ++GFG FQ  +    G+ W+++AMEMM+LS + 
Sbjct: 49  ELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILA 108

Query: 102 PAVQSAWSLSPHEESLITSVVFAGMK-----------------GFFITATITSIAGFLSA 161
           P +   W L   + +L+TSVVF GM                  G  I+   T   G LSA
Sbjct: 109 PQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSA 168

Query: 162 FAPNYTSLLILRCLVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLA 196
           FAP Y+ +L+LR LVG G+GG P   + + EF+P   R   +++   FW +GT+ E  LA
Sbjct: 169 FAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLA 228

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BLAST of Lsi05G002540 vs. Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.8e-23
Identity = 61/180 (33.89%), Postives = 96/180 (53.33%), Query Frame = 1


Query: 42  KVEDGGESPR---------YTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVG 101
           +++DG   P+         + +++A+ ++GFG FQ  +    G+ W+++AMEMM+LS + 
Sbjct: 49  ELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILA 108

Query: 102 PAVQSAWSLSPHEESLITSVVFAGMK-----------------GFFITATITSIAGFLSA 161
           P +   W L   + +L+TSVVF GM                  G  I+   T   G LSA
Sbjct: 109 PQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSA 168

Query: 162 FAPNYTSLLILRCLVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLA 196
           FAP Y+ +L+LR LVG G+GG P   + + EF+P   R   +++   FW +GT+ E  LA
Sbjct: 169 FAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLA 228

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BLAST of Lsi05G002540 vs. TrEMBL
Match: A0A0A0L6X7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198470 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.0e-77
Identity = 161/214 (75.23%), Postives = 167/214 (78.04%), Query Frame = 1


Query: 1   MEMEERSFVNSADRQQVHLLSLLSFHILTITRICNVDFLSCKVEDGGESPRYTIDEALVS 60
           MEMEERS V S++R QV                           DGGESPRYTIDEALVS
Sbjct: 1   MEMEERSLVVSSNRHQVG--------------------------DGGESPRYTIDEALVS 60

Query: 61  MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHEESLITSVVFAGM--- 120
           MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQS+W+LSPHEESLITSVVFAGM   
Sbjct: 61  MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSSWNLSPHEESLITSVVFAGMLVG 120

Query: 121 --------------KGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASW 180
                         KGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASW
Sbjct: 121 AYAWGIVSDKYGRRKGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASW 180

Query: 181 FLEFIPAPERGTWMVIFSAFWTVGTILEASLAWV 198
           FLEFIPAPERGTWMVIFSAFWT+GTILEASLAW+
Sbjct: 181 FLEFIPAPERGTWMVIFSAFWTIGTILEASLAWI 188

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BLAST of Lsi05G002540 vs. TrEMBL
Match: D7SRT9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g01610 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 8.0e-67
Identity = 133/168 (79.17%), Postives = 141/168 (83.93%), Query Frame = 1


Query: 46  GGESPRYTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHE 105
           G ESP YT+D+ALV+MGFGNFQILVLAYAGMGW+SEAMEMMLLSFVGPAVQSAW LS HE
Sbjct: 2   GDESPNYTVDDALVAMGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSHE 61

Query: 106 ESLITSVVFAGM-----------------KGFFITATITSIAGFLSAFAPNYTSLLILRC 165
           ESLITSVVFAGM                 KGF ITA +TS AGFLSAFAPNY SL+ILRC
Sbjct: 62  ESLITSVVFAGMLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILRC 121

Query: 166 LVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAW 197
           LVG+GLGGGPVL+SWFLEFIPAP RGTWMVIFS FWTVGTILEASLAW
Sbjct: 122 LVGLGLGGGPVLSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAW 169

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BLAST of Lsi05G002540 vs. TrEMBL
Match: A5AGQ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042940 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 8.0e-67
Identity = 133/168 (79.17%), Postives = 141/168 (83.93%), Query Frame = 1


Query: 46  GGESPRYTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHE 105
           G ESP YT+D+ALV+MGFGNFQILVLAYAGMGW+SEAMEMMLLSFVGPAVQSAW LS HE
Sbjct: 2   GDESPNYTVDDALVAMGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSHE 61

Query: 106 ESLITSVVFAGM-----------------KGFFITATITSIAGFLSAFAPNYTSLLILRC 165
           ESLITSVVFAGM                 KGF ITA +TS AGFLSAFAPNY SL+ILRC
Sbjct: 62  ESLITSVVFAGMLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILRC 121

Query: 166 LVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAW 197
           LVG+GLGGGPVL+SWFLEFIPAP RGTWMVIFS FWTVGTILEASLAW
Sbjct: 122 LVGLGLGGGPVLSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAW 169

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BLAST of Lsi05G002540 vs. TrEMBL
Match: M5WTD2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004702mg PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.7e-64
Identity = 130/168 (77.38%), Postives = 139/168 (82.74%), Query Frame = 1


Query: 46  GGESPRYTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHE 105
           G  SP YT+DEALV+MGFG FQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAW LS  +
Sbjct: 2   GDGSPEYTVDEALVAMGFGKFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWGLSSQQ 61

Query: 106 ESLITSVVFAGM-----------------KGFFITATITSIAGFLSAFAPNYTSLLILRC 165
           ES ITSVVFAGM                 KGF ITATITS AGFLSA +PNYTSL++LRC
Sbjct: 62  ESFITSVVFAGMLVGAYSWGIVSDKHGRRKGFLITATITSGAGFLSALSPNYTSLILLRC 121

Query: 166 LVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAW 197
           LVGVGLGGGPVL+SWFLEFIPAP RGTWMV+FSAFWT+GTILEASLAW
Sbjct: 122 LVGVGLGGGPVLSSWFLEFIPAPNRGTWMVVFSAFWTLGTILEASLAW 169

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BLAST of Lsi05G002540 vs. TrEMBL
Match: I1KVW4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G226400 PE=4 SV=2)

HSP 1 Score: 251.9 bits (642), Expect = 6.4e-64
Identity = 124/169 (73.37%), Postives = 142/169 (84.02%), Query Frame = 1


Query: 46  GGESPRYTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHE 105
           G E P YT+D+ALV++GFGNFQILVLAYAG+GWVSEAMEMMLLSFVGPAVQ+AW+LS HE
Sbjct: 3   GAEGPTYTVDDALVALGFGNFQILVLAYAGVGWVSEAMEMMLLSFVGPAVQTAWNLSAHE 62

Query: 106 ESLITSVVFAGM-----------------KGFFITATITSIAGFLSAFAPNYTSLLILRC 165
           ESLITSVVFAGM                 KGF ITAT+T++AGFLSAFAPNY  L++LR 
Sbjct: 63  ESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFLITATVTALAGFLSAFAPNYIFLIVLRS 122

Query: 166 LVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAWV 198
           LVG+GLGGGPVL+SWFLEF+PAP RGTWMV+FSAFWT+GTI EASLAW+
Sbjct: 123 LVGIGLGGGPVLSSWFLEFVPAPNRGTWMVVFSAFWTLGTIFEASLAWI 171

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BLAST of Lsi05G002540 vs. TAIR10
Match: AT3G13050.1 (AT3G13050.1 Major facilitator superfamily protein)

HSP 1 Score: 238.4 bits (607), Expect = 3.7e-63
Identity = 121/164 (73.78%), Postives = 135/164 (82.32%), Query Frame = 1


Query: 51  RYTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHEESLIT 110
           R+T+DEALV+MGFG FQI VLAYAGMGWV+EAMEMMLLSFVGPAVQS W+LS  +ESLIT
Sbjct: 7   RFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLIT 66

Query: 111 SVVFAGM-----------------KGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVG 170
           SVVFAGM                 KGF ITA +T +AGFLSAF+PNY  L+ILRCLVG+G
Sbjct: 67  SVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLG 126

Query: 171 LGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAWV 198
           LGGGPVLASW+LEFIPAP RGTWMV+FSAFWTVGTI EASLAW+
Sbjct: 127 LGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWL 170

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BLAST of Lsi05G002540 vs. NCBI nr
Match: gi|659112367|ref|XP_008456184.1| (PREDICTED: organic cation/carnitine transporter 7 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.3e-78
Identity = 164/214 (76.64%), Postives = 168/214 (78.50%), Query Frame = 1


Query: 1   MEMEERSFVNSADRQQVHLLSLLSFHILTITRICNVDFLSCKVEDGGESPRYTIDEALVS 60
           MEMEERSFV S+D  QV                          EDGGESPRYTIDEALVS
Sbjct: 1   MEMEERSFVVSSDPHQV--------------------------EDGGESPRYTIDEALVS 60

Query: 61  MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHEESLITSVVFAGM--- 120
           MGFGNFQILVLAYAGMGW+SEAMEMMLLSFVGPAVQSAW+LSPHEESLITSVVFAGM   
Sbjct: 61  MGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWNLSPHEESLITSVVFAGMLVG 120

Query: 121 --------------KGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASW 180
                         KGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASW
Sbjct: 121 AYTWGIVSDKYGRRKGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASW 180

Query: 181 FLEFIPAPERGTWMVIFSAFWTVGTILEASLAWV 198
           FLEFIPAPERGTWMVIFSAFWTVGTILEASLAW+
Sbjct: 181 FLEFIPAPERGTWMVIFSAFWTVGTILEASLAWI 188

[Close]

BLAST of Lsi05G002540 vs. NCBI nr
Match: gi|449445929|ref|XP_004140724.1| (PREDICTED: organic cation/carnitine transporter 7 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 7.2e-77
Identity = 161/214 (75.23%), Postives = 167/214 (78.04%), Query Frame = 1


Query: 1   MEMEERSFVNSADRQQVHLLSLLSFHILTITRICNVDFLSCKVEDGGESPRYTIDEALVS 60
           MEMEERS V S++R QV                           DGGESPRYTIDEALVS
Sbjct: 1   MEMEERSLVVSSNRHQVG--------------------------DGGESPRYTIDEALVS 60

Query: 61  MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHEESLITSVVFAGM--- 120
           MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQS+W+LSPHEESLITSVVFAGM   
Sbjct: 61  MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSSWNLSPHEESLITSVVFAGMLVG 120

Query: 121 --------------KGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASW 180
                         KGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASW
Sbjct: 121 AYAWGIVSDKYGRRKGFFITATITSIAGFLSAFAPNYTSLLILRCLVGVGLGGGPVLASW 180

Query: 181 FLEFIPAPERGTWMVIFSAFWTVGTILEASLAWV 198
           FLEFIPAPERGTWMVIFSAFWT+GTILEASLAW+
Sbjct: 181 FLEFIPAPERGTWMVIFSAFWTIGTILEASLAWI 188

[Close]

BLAST of Lsi05G002540 vs. NCBI nr
Match: gi|147767934|emb|CAN64534.1| (hypothetical protein VITISV_042940 [Vitis vinifera])

HSP 1 Score: 261.5 bits (667), Expect = 1.2e-66
Identity = 133/168 (79.17%), Postives = 141/168 (83.93%), Query Frame = 1


Query: 46  GGESPRYTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHE 105
           G ESP YT+D+ALV+MGFGNFQILVLAYAGMGW+SEAMEMMLLSFVGPAVQSAW LS HE
Sbjct: 2   GDESPNYTVDDALVAMGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSHE 61

Query: 106 ESLITSVVFAGM-----------------KGFFITATITSIAGFLSAFAPNYTSLLILRC 165
           ESLITSVVFAGM                 KGF ITA +TS AGFLSAFAPNY SL+ILRC
Sbjct: 62  ESLITSVVFAGMLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILRC 121

Query: 166 LVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAW 197
           LVG+GLGGGPVL+SWFLEFIPAP RGTWMVIFS FWTVGTILEASLAW
Sbjct: 122 LVGLGLGGGPVLSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAW 169

[Close]

BLAST of Lsi05G002540 vs. NCBI nr
Match: gi|225443470|ref|XP_002273636.1| (PREDICTED: organic cation/carnitine transporter 7 [Vitis vinifera])

HSP 1 Score: 261.5 bits (667), Expect = 1.2e-66
Identity = 133/168 (79.17%), Postives = 141/168 (83.93%), Query Frame = 1


Query: 46  GGESPRYTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHE 105
           G ESP YT+D+ALV+MGFGNFQILVLAYAGMGW+SEAMEMMLLSFVGPAVQSAW LS HE
Sbjct: 2   GDESPNYTVDDALVAMGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSHE 61

Query: 106 ESLITSVVFAGM-----------------KGFFITATITSIAGFLSAFAPNYTSLLILRC 165
           ESLITSVVFAGM                 KGF ITA +TS AGFLSAFAPNY SL+ILRC
Sbjct: 62  ESLITSVVFAGMLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILRC 121

Query: 166 LVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAW 197
           LVG+GLGGGPVL+SWFLEFIPAP RGTWMVIFS FWTVGTILEASLAW
Sbjct: 122 LVGLGLGGGPVLSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAW 169

[Close]

BLAST of Lsi05G002540 vs. NCBI nr
Match: gi|595930839|ref|XP_007215272.1| (hypothetical protein PRUPE_ppa004702mg [Prunus persica])

HSP 1 Score: 252.7 bits (644), Expect = 5.4e-64
Identity = 130/168 (77.38%), Postives = 139/168 (82.74%), Query Frame = 1


Query: 46  GGESPRYTIDEALVSMGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWSLSPHE 105
           G  SP YT+DEALV+MGFG FQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAW LS  +
Sbjct: 2   GDGSPEYTVDEALVAMGFGKFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSAWGLSSQQ 61

Query: 106 ESLITSVVFAGM-----------------KGFFITATITSIAGFLSAFAPNYTSLLILRC 165
           ES ITSVVFAGM                 KGF ITATITS AGFLSA +PNYTSL++LRC
Sbjct: 62  ESFITSVVFAGMLVGAYSWGIVSDKHGRRKGFLITATITSGAGFLSALSPNYTSLILLRC 121

Query: 166 LVGVGLGGGPVLASWFLEFIPAPERGTWMVIFSAFWTVGTILEASLAW 197
           LVGVGLGGGPVL+SWFLEFIPAP RGTWMV+FSAFWT+GTILEASLAW
Sbjct: 122 LVGVGLGGGPVLSSWFLEFIPAPNRGTWMVVFSAFWTLGTILEASLAW 169

The following BLAST results are available for this feature:

BLAST of Lsi05G002540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
OCT7_ARATH	6.6e-62	73.78	Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1	[more]
SVOP_CAEEL	8.4e-25	35.19	Putative transporter svop-1 OS=Caenorhabditis elegans GN=svop-1 PE=3 SV=5	[more]
SVOP_HUMAN	6.0e-23	33.16	Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1	[more]
SVOP_BOVIN	7.8e-23	33.89	Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1	[more]
SVOP_PONAB	7.8e-23	33.89	Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1	[more]

BLAST of Lsi05G002540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6X7_CUCSA	5.0e-77	75.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198470 PE=4 SV=1	[more]
D7SRT9_VITVI	8.0e-67	79.17	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g01610 PE=4 SV=...	[more]
A5AGQ9_VITVI	8.0e-67	79.17	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042940 PE=4 SV=1	[more]
M5WTD2_PRUPE	3.7e-64	77.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004702mg PE=4 SV=1	[more]
I1KVW4_SOYBN	6.4e-64	73.37	Uncharacterized protein OS=Glycine max GN=GLYMA_08G226400 PE=4 SV=2	[more]

BLAST of Lsi05G002540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13050.1	3.7e-63	73.78	Major facilitator superfamily protein	[more]

BLAST of Lsi05G002540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112367\|ref\|XP_008456184.1\|	1.3e-78	76.64	PREDICTED: organic cation/carnitine transporter 7 [Cucumis melo]	[more]
gi\|449445929\|ref\|XP_004140724.1\|	7.2e-77	75.23	PREDICTED: organic cation/carnitine transporter 7 [Cucumis sativus]	[more]
gi\|147767934\|emb\|CAN64534.1\|	1.2e-66	79.17	hypothetical protein VITISV_042940 [Vitis vinifera]	[more]
gi\|225443470\|ref\|XP_002273636.1\|	1.2e-66	79.17	PREDICTED: organic cation/carnitine transporter 7 [Vitis vinifera]	[more]
gi\|595930839\|ref\|XP_007215272.1\|	5.4e-64	77.38	hypothetical protein PRUPE_ppa004702mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020846	MFS_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2001142	nicotinate transport
biological_process	GO:2001143	N-methylnicotinate transport
biological_process	GO:0007165	signal transduction
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0009860	pollen tube growth
biological_process	GO:0009827	plant-type cell wall modification
biological_process	GO:0015706	nitrate transport
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0009693	ethylene biosynthetic process
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0033554	cellular response to stress
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0071310	cellular response to organic substance
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0016043	cellular component organization
biological_process	GO:0006865	amino acid transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005622	intracellular
molecular_function	GO:0022891	substrate-specific transmembrane transporter activity
molecular_function	GO:0090417	N-methylnicotinate transporter activity
molecular_function	GO:0090416	nicotinate transporter activity
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G002540.1	Lsi05G002540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020846	Major facilitator superfamily domain	PROFILE	PS50850	MFS	coord: 53..197 score: 9
IPR020846	Major facilitator superfamily domain	unknown	SSF103473	MFS general substrate transporter	coord: 55..195 score: 3.27
None	No IPR available	GENE3D	G3DSA:1.20.1250.20		coord: 120..195 score: 1.
None	No IPR available	PANTHER	PTHR24064	FAMILY NOT NAMED	coord: 48..197 score: 1.6
None	No IPR available	PANTHER	PTHR24064:SF287	SUBFAMILY NOT NAMED	coord: 48..197 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G002540	Csa3G198470	Cucumber (Chinese Long) v2	culsiB211
Lsi05G002540	CSPI03G17990	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G002540	Cucsa.108780	Cucumber (Gy14) v1	cgylsiB144
Lsi05G002540	CmaCh14G008840	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G002540	CmaCh01G003280	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G002540	CmoCh01G003430	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G002540	CmoCh14G009020	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G002540	Cla013113	Watermelon (97103) v1	lsiwmB361
Lsi05G002540	MELO3C019560	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G002540	ClCG05G010430	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G002540	MELO3C019560.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G002540	Cla97C05G092810	Watermelon (97103) v2	lsiwmbB329
Lsi05G002540	Bhi01G001298	Wax gourd	lsiwgoB431
Lsi05G002540	Cp4.1LG03g05450	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G002540	Cp4.1LG02g16520	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G002540	CsGy3G017930	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G002540	Carg24254	Silver-seed gourd	carlsiB158
Lsi05G002540	Carg07419	Silver-seed gourd	carlsiB700
Lsi05G002540	CsaV3_3G018060	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None