Lsi05G001720 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G001720
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSerine hydroxymethyltransferase
Locationchr05 : 2428568 .. 2429875 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTAATGATTCTTTGCTTTGTATTTAAAGGGATGCCACGTAAGCAAAAAATCCACTCTGCAGAAAAGAGAAGGGGTATCATTAATCAAAATTGACCTTATCTAGCACAGTTCATCAAGGATTTTTGTAGAAGGAGCAGTGTTAGAATAGACTACTTTTTGGCTTTTGAACCATCTCTGTCATGAGCAGCAACAGGTAGAAGAGATGAGACTTCAGGATTTCTTCTCTGTGTAATATCAGACGTATTGATGCCCCTGGGCTTCCTTTCTGCCAAATGGCTTCAGAAGCCTCTTGTAAAGAATGGTGGATCTTTCTCTTCCTAACGAAAAACAATTGCTTTGATTTTCATTTTGGTGTTATTTCATGATCCATCTCTAGGACTAAGGGTTGCAGAGTGTATTGCGAAAGATTTGGCTTGTAGTGAAATAACTTCATAATGTAGTTCTGGATGCATCAAGTTTTGTCTTTCGAGGTTGGTCTCCTCCACATCCTCCTACATTGAGCCTGATACTGAGATCATAAATATAATTTTGACGTTATGAAATAGCTTTTCTAGAAATGAACTTGTGTGACTTTTCAACTGGATATAGGACATTGTTTCACTGCTAAATAATCTTACTATCATAGTCCGTTATGTAGTGGACTGCAAGAAGATCCCTTTTTCTAGCTTCGTTATTTATATTATACAAGGTAAAAAAATGTAGACAGATTCTGAATGATGTTCATCTGTTACAACTCAACTTGTGTTTTGTATTCCATATTTGTTTACGTCTGTTTCTTCTAAGTTCTAGTTTGGATGGTACATGTGGCTGCTTAATCTATTATTCTTCATTTATTATATATTGTGTAGTCTTTCTGATGCCATGGTAATTGTAGGTAAAAACTTGGAGCAACTTTGTGAGATGTGTCACATTACTCTCAACAAAATTATAATATTTGGTGATAATGGAATTATTACTACTGGAGGAGTAAGGATTGGTGAGTTACCCTCATATATTTTATATTTTGGGGGTACCCTAAGATTGTAGAGCTCGGTATGCTTTGATTATGCTTATGAATTAGCTGTCTGTTATCCCTGCAGGCACCCCAGCCATGACATCAAGAGGCTGTCTGGAATCTGATTTTGAGGTAATTGTTGAATTTCTTCACACAGCCGCTCAAATTGCAATTTGTATTCAGCGAGAGTATGGGAAGTTGCCAAATGCTTTTCTTACGGGCCTTCAAAGTAATAATGAAGTCGTTGAGCTCGGATACCGTGTTGAAAGTTTTTCAGCTAAATTTGCCATGCCAGGTGTTGAAACCTGA

mRNA sequence

ATGAGTCTTTCTGATGCCATGGTAATTGTAGGTAAAAACTTGGAGCAACTTTGTGAGATGTGTCACATTACTCTCAACAAAATTATAATATTTGGTGATAATGGAATTATTACTACTGGAGGAGTAAGGATTGGCACCCCAGCCATGACATCAAGAGGCTGTCTGGAATCTGATTTTGAGGTAATTGTTGAATTTCTTCACACAGCCGCTCAAATTGCAATTTGTATTCAGCGAGAGTATGGGAAGTTGCCAAATGCTTTTCTTACGGGCCTTCAAAGTAATAATGAAGTCGTTGAGCTCGGATACCGTGTTGAAAGTTTTTCAGCTAAATTTGCCATGCCAGGTGTTGAAACCTGA

Coding sequence (CDS)

ATGAGTCTTTCTGATGCCATGGTAATTGTAGGTAAAAACTTGGAGCAACTTTGTGAGATGTGTCACATTACTCTCAACAAAATTATAATATTTGGTGATAATGGAATTATTACTACTGGAGGAGTAAGGATTGGCACCCCAGCCATGACATCAAGAGGCTGTCTGGAATCTGATTTTGAGGTAATTGTTGAATTTCTTCACACAGCCGCTCAAATTGCAATTTGTATTCAGCGAGAGTATGGGAAGTTGCCAAATGCTTTTCTTACGGGCCTTCAAAGTAATAATGAAGTCGTTGAGCTCGGATACCGTGTTGAAAGTTTTTCAGCTAAATTTGCCATGCCAGGTGTTGAAACCTGA

Protein sequence

MSLSDAMVIVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVET
Homology
[Close]
BLAST of Lsi05G001720 vs. Swiss-Prot
Match: GLYC7_ARATH (Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana GN=SHM7 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-30
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1 

Query: 7   MVIVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFL 66
           M + GK  E++CEMCHITLNK  IFGDNG I+ GGVRIGTPAMT+RGC+ESDFE + +FL
Sbjct: 484 MGLTGKVYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIESDFETMADFL 543

Query: 67  HTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMP 115
             AAQI   +QRE+GK    F+  L +N ++ EL  RVE+F+ ++ MP
Sbjct: 544 IKAAQITSALQREHGKSHKEFVKSLCTNKDIAELRNRVEAFALQYEMP 591

[Close]
BLAST of Lsi05G001720 vs. Swiss-Prot
Match: GLYC6_ARATH (Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana GN=SHM6 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.4e-29
Identity = 58/109 (53.21%), Postives = 80/109 (73.39%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + GK  E++CEMCHIT+NK+ IF +NG+I+ GGVRIG+PAMTSRGCLE +FE + +FL+ 
Sbjct: 490 LTGKVYEKVCEMCHITVNKVAIFSENGVISPGGVRIGSPAMTSRGCLEPEFETMADFLYR 549

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVE 118
           AAQIA   QRE+GKL    L  +    E+ +L  +VE+F+ +FAMP  +
Sbjct: 550 AAQIASAAQREHGKLQKEPLKSIYHCKEIADLRNQVEAFATQFAMPAFD 598

[Close]
BLAST of Lsi05G001720 vs. Swiss-Prot
Match: GLYC5_ARATH (Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana GN=SHM5 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.9e-26
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + G  +E++CE+C+ITLN+  +FGD   +  GGVRIGTPAMTSRG +E DFE I EFLH 
Sbjct: 355 LTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHR 414

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPG 116
           A  I + IQ +YGK+   F  GL +N E+ E+   VE F+  F MPG
Sbjct: 415 AVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPG 461

[Close]
BLAST of Lsi05G001720 vs. Swiss-Prot
Match: GLYC4_ARATH (Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana GN=SHM4 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-24
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + G  +E+LC++C ITLNK  +FGD+  +  GGVRIG PAMTSRG +E DFE I EFL  
Sbjct: 355 LTGNKVEKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSR 414

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPG 116
           A  + + IQ+ YGKL   F  GL +N ++ +L   VE FSA + MPG
Sbjct: 415 AVTLTLDIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPG 461

[Close]
BLAST of Lsi05G001720 vs. Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           I G  +E+ C+  HIT+NK  ++GD   I  GGVR+G PA+TSRG  E DF  +V+FL  
Sbjct: 373 ITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDR 432

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPG 116
             +I++ IQ + GK    F   +  N ++ ++   V+ FS KF MPG
Sbjct: 433 VVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479

[Close]
BLAST of Lsi05G001720 vs. TrEMBL
Match: A0A0A0LAD1_CUCSA (Serine hydroxymethyltransferase OS=Cucumis sativus GN=Csa_3G221750 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.8e-52
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 1 

Query: 11  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAA 70
           GKNLEQLCEMCHITLNKIII GDNG+ITTGGVRIGTPAMTSRGCLESDFE+IVEFLHTAA
Sbjct: 478 GKNLEQLCEMCHITLNKIIISGDNGVITTGGVRIGTPAMTSRGCLESDFELIVEFLHTAA 537

Query: 71  QIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVET 119
           QIAICIQREYGK+PNAFLTGLQSN EVVELG RVESFSAKF+MPGVET
Sbjct: 538 QIAICIQREYGKMPNAFLTGLQSNKEVVELGNRVESFSAKFSMPGVET 585

[Close]
BLAST of Lsi05G001720 vs. TrEMBL
Match: A0A022QF12_ERYGU (Serine hydroxymethyltransferase OS=Erythranthe guttata GN=MIMGU_mgv1a0032522mg PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-36
Identity = 72/109 (66.06%), Postives = 93/109 (85.32%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + GKNLE++CE+C+ITLNK+ IF DNG IT GGVRIGTPAMT+RGC+E+DFE + EFL  
Sbjct: 488 LTGKNLEKVCELCYITLNKVTIFDDNGNITPGGVRIGTPAMTTRGCVEADFETMAEFLLR 547

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVE 118
           AAQIA  +QRE+GK+P +FL GL++N E+VEL  RVESFS++FAMPG++
Sbjct: 548 AAQIASTVQREHGKVPKSFLKGLENNKEIVELRARVESFSSQFAMPGID 596

[Close]
BLAST of Lsi05G001720 vs. TrEMBL
Match: F6H906_VITVI (Serine hydroxymethyltransferase OS=Vitis vinifera GN=VIT_12s0034g02380 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-36
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + GKN E++CEMCHITLNKI IFGDNG IT GGVRIGTPAMTSRGCLE+DFE I +FL  
Sbjct: 468 LTGKNYEKVCEMCHITLNKIAIFGDNGTITPGGVRIGTPAMTSRGCLEADFETIADFLLR 527

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVE 118
           AAQIA  +QRE+GK+  AFL GL+SN ++VEL  RVE F+ +F MPG +
Sbjct: 528 AAQIASVVQREHGKMQKAFLKGLESNKDIVELRTRVEIFATQFVMPGFD 576

[Close]
BLAST of Lsi05G001720 vs. TrEMBL
Match: A0A068TNP7_COFCA (Serine hydroxymethyltransferase OS=Coffea canephora GN=GSCOC_T00014951001 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-36
Identity = 71/109 (65.14%), Postives = 90/109 (82.57%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + GKN E++CE+CH+TLNK+ IF DNG IT GGVRIGTPAMTSRGCLE+DFE I +FL  
Sbjct: 456 LTGKNFEKVCELCHVTLNKVTIFDDNGTITPGGVRIGTPAMTSRGCLEADFETIADFLFR 515

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVE 118
           AAQIA  +QRE+GKLP AFL GL++N +++EL   VESF+++FAMPG +
Sbjct: 516 AAQIASSVQREHGKLPKAFLKGLENNKDIIELRTWVESFASQFAMPGFD 564

[Close]
BLAST of Lsi05G001720 vs. TrEMBL
Match: A0A0J8C7B1_BETVU (Serine hydroxymethyltransferase OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g143730 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.5e-36
Identity = 72/109 (66.06%), Postives = 88/109 (80.73%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + GKN E++CE CHITLNK+ +FGDNG IT GGVRIGTPAMT+RGCLE DFEVI +FL  
Sbjct: 505 LTGKNFEKVCETCHITLNKVALFGDNGTITPGGVRIGTPAMTTRGCLEHDFEVIADFLIL 564

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVE 118
           AAQI   +QRE+GKL  AFL G+QSN +++EL  R+E FSA+FAMPG +
Sbjct: 565 AAQITSKVQREHGKLQKAFLKGMQSNKDIIELRTRIEVFSAQFAMPGFD 613

[Close]
BLAST of Lsi05G001720 vs. TAIR10
Match: AT1G36370.1 (AT1G36370.1 serine hydroxymethyltransferase 7)

HSP 1 Score: 133.3 bits (334), Expect = 1.0e-31
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1 

Query: 7   MVIVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFL 66
           M + GK  E++CEMCHITLNK  IFGDNG I+ GGVRIGTPAMT+RGC+ESDFE + +FL
Sbjct: 484 MGLTGKVYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIESDFETMADFL 543

Query: 67  HTAAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMP 115
             AAQI   +QRE+GK    F+  L +N ++ EL  RVE+F+ ++ MP
Sbjct: 544 IKAAQITSALQREHGKSHKEFVKSLCTNKDIAELRNRVEAFALQYEMP 591

[Close]
BLAST of Lsi05G001720 vs. TAIR10
Match: AT1G22020.1 (AT1G22020.1 serine hydroxymethyltransferase 6)

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-30
Identity = 58/109 (53.21%), Postives = 80/109 (73.39%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + GK  E++CEMCHIT+NK+ IF +NG+I+ GGVRIG+PAMTSRGCLE +FE + +FL+ 
Sbjct: 490 LTGKVYEKVCEMCHITVNKVAIFSENGVISPGGVRIGSPAMTSRGCLEPEFETMADFLYR 549

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVE 118
           AAQIA   QRE+GKL    L  +    E+ +L  +VE+F+ +FAMP  +
Sbjct: 550 AAQIASAAQREHGKLQKEPLKSIYHCKEIADLRNQVEAFATQFAMPAFD 598

[Close]
BLAST of Lsi05G001720 vs. TAIR10
Match: AT4G13890.1 (AT4G13890.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein)

HSP 1 Score: 118.2 bits (295), Expect = 3.3e-27
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + G  +E++CE+C+ITLN+  +FGD   +  GGVRIGTPAMTSRG +E DFE I EFLH 
Sbjct: 355 LTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHR 414

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPG 116
           A  I + IQ +YGK+   F  GL +N E+ E+   VE F+  F MPG
Sbjct: 415 AVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPG 461

[Close]
BLAST of Lsi05G001720 vs. TAIR10
Match: AT4G13930.1 (AT4G13930.1 serine hydroxymethyltransferase 4)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + G  +E+LC++C ITLNK  +FGD+  +  GGVRIG PAMTSRG +E DFE I EFL  
Sbjct: 355 LTGNKVEKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSR 414

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPG 116
           A  + + IQ+ YGKL   F  GL +N ++ +L   VE FSA + MPG
Sbjct: 415 AVTLTLDIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPG 461

[Close]
BLAST of Lsi05G001720 vs. TAIR10
Match: AT4G32520.1 (AT4G32520.1 serine hydroxymethyltransferase 3)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 1 

Query: 11  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAA 70
           G  +E++ +M  ITLNK  + GD   +  GG+RIG+PAMT+RG  E DF V+ +F+    
Sbjct: 418 GARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGV 477

Query: 71  QIAICIQREY--GKLP--NAFLTG--LQSNNEVVELGYRVESFSAKFAMPGV 117
           +I +  ++     KL   N F+T         V  L  RVE+F+++F +PGV
Sbjct: 478 EITMEAKKAAPGSKLQDFNKFVTSPEFPLKERVKSLKERVETFTSRFPIPGV 529

[Close]
BLAST of Lsi05G001720 vs. NCBI nr
Match: gi|659112103|ref|XP_008456065.1| (PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 1 

Query: 11  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAA 70
           GKNLEQLCEMCHITLNKIIIFGDNG+ITTGGVRIGTPAMTSRGCLESDFE+IVEFLHTAA
Sbjct: 478 GKNLEQLCEMCHITLNKIIIFGDNGVITTGGVRIGTPAMTSRGCLESDFELIVEFLHTAA 537

Query: 71  QIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVET 119
           QIAICIQREYGK+PNAFLTG+QSN EVVELG RVESFSAKFAMPGVET
Sbjct: 538 QIAICIQREYGKMPNAFLTGVQSNKEVVELGNRVESFSAKFAMPGVET 585

[Close]
BLAST of Lsi05G001720 vs. NCBI nr
Match: gi|449457095|ref|XP_004146284.1| (PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-51
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 1 

Query: 11  GKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHTAA 70
           GKNLEQLCEMCHITLNKIII GDNG+ITTGGVRIGTPAMTSRGCLESDFE+IVEFLHTAA
Sbjct: 478 GKNLEQLCEMCHITLNKIIISGDNGVITTGGVRIGTPAMTSRGCLESDFELIVEFLHTAA 537

Query: 71  QIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVET 119
           QIAICIQREYGK+PNAFLTGLQSN EVVELG RVESFSAKF+MPGVET
Sbjct: 538 QIAICIQREYGKMPNAFLTGLQSNKEVVELGNRVESFSAKFSMPGVET 585

[Close]
BLAST of Lsi05G001720 vs. NCBI nr
Match: gi|747080922|ref|XP_011087728.1| (PREDICTED: serine hydroxymethyltransferase 6-like [Sesamum indicum])

HSP 1 Score: 161.4 bits (407), Expect = 9.7e-37
Identity = 74/109 (67.89%), Postives = 91/109 (83.49%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + GKN E++CE CHITLNK+ IF DNG IT GGVRIGTPAMTSRGCLE+DFE++ EFL  
Sbjct: 492 LTGKNFEKVCEFCHITLNKVTIFDDNGNITPGGVRIGTPAMTSRGCLEADFEMMAEFLLR 551

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVE 118
           AAQIA  +QRE+GKLP +FL GL++N E+VEL  RVESF+++FAMPG +
Sbjct: 552 AAQIASSVQREHGKLPKSFLKGLENNKEIVELRMRVESFASQFAMPGFD 600

[Close]
BLAST of Lsi05G001720 vs. NCBI nr
Match: gi|848900410|ref|XP_012850364.1| (PREDICTED: serine hydroxymethyltransferase 7-like [Erythranthe guttata])

HSP 1 Score: 159.8 bits (403), Expect = 2.8e-36
Identity = 72/109 (66.06%), Postives = 93/109 (85.32%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + GKNLE++CE+C+ITLNK+ IF DNG IT GGVRIGTPAMT+RGC+E+DFE + EFL  
Sbjct: 488 LTGKNLEKVCELCYITLNKVTIFDDNGNITPGGVRIGTPAMTTRGCVEADFETMAEFLLR 547

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVE 118
           AAQIA  +QRE+GK+P +FL GL++N E+VEL  RVESFS++FAMPG++
Sbjct: 548 AAQIASTVQREHGKVPKSFLKGLENNKEIVELRARVESFSSQFAMPGID 596

[Close]
BLAST of Lsi05G001720 vs. NCBI nr
Match: gi|661899575|emb|CDO97569.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-36
Identity = 71/109 (65.14%), Postives = 90/109 (82.57%), Query Frame = 1 

Query: 9   IVGKNLEQLCEMCHITLNKIIIFGDNGIITTGGVRIGTPAMTSRGCLESDFEVIVEFLHT 68
           + GKN E++CE+CH+TLNK+ IF DNG IT GGVRIGTPAMTSRGCLE+DFE I +FL  
Sbjct: 456 LTGKNFEKVCELCHVTLNKVTIFDDNGTITPGGVRIGTPAMTSRGCLEADFETIADFLFR 515

Query: 69  AAQIAICIQREYGKLPNAFLTGLQSNNEVVELGYRVESFSAKFAMPGVE 118
           AAQIA  +QRE+GKLP AFL GL++N +++EL   VESF+++FAMPG +
Sbjct: 516 AAQIASSVQREHGKLPKAFLKGLENNKDIIELRTWVESFASQFAMPGFD 564

The following BLAST results are available for this feature:
BLAST of Lsi05G001720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GLYC7_ARATH1.8e-3057.41Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana GN=SHM7 PE=2 SV=1[more]
GLYC6_ARATH4.4e-2953.21Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana GN=SHM6 PE=2 SV=1[more]
GLYC5_ARATH5.9e-2651.40Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana GN=SHM5 PE=3 SV=1[more]
GLYC4_ARATH1.9e-2450.47Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana GN=SHM4 PE=1 SV=1[more]
GLYC2_DICDI1.4e-1941.12Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1[more]
BLAST of Lsi05G001720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAD1_CUCSA9.8e-5293.52Serine hydroxymethyltransferase OS=Cucumis sativus GN=Csa_3G221750 PE=3 SV=1[more]
A0A022QF12_ERYGU2.0e-3666.06Serine hydroxymethyltransferase OS=Erythranthe guttata GN=MIMGU_mgv1a0032522mg P... [more]
F6H906_VITVI3.4e-3667.89Serine hydroxymethyltransferase OS=Vitis vinifera GN=VIT_12s0034g02380 PE=3 SV=1[more]
A0A068TNP7_COFCA3.4e-3665.14Serine hydroxymethyltransferase OS=Coffea canephora GN=GSCOC_T00014951001 PE=3 S... [more]
A0A0J8C7B1_BETVU7.5e-3666.06Serine hydroxymethyltransferase OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g14373... [more]
BLAST of Lsi05G001720 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G36370.11.0e-3157.41 serine hydroxymethyltransferase 7[more]
AT1G22020.12.5e-3053.21 serine hydroxymethyltransferase 6[more]
AT4G13890.13.3e-2751.40 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein[more]
AT4G13930.11.1e-2550.47 serine hydroxymethyltransferase 4[more]
AT4G32520.12.5e-1437.50 serine hydroxymethyltransferase 3[more]
BLAST of Lsi05G001720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112103|ref|XP_008456065.1|1.7e-5294.44PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis melo][more]
gi|449457095|ref|XP_004146284.1|1.4e-5193.52PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis sativus][more]
gi|747080922|ref|XP_011087728.1|9.7e-3767.89PREDICTED: serine hydroxymethyltransferase 6-like [Sesamum indicum][more]
gi|848900410|ref|XP_012850364.1|2.8e-3666.06PREDICTED: serine hydroxymethyltransferase 7-like [Erythranthe guttata][more]
gi|661899575|emb|CDO97569.1|4.8e-3665.14unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR015422PyrdxlP-dep_Trfase_dom1
IPR001085Ser_HO-MeTrfase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0032259 methylation
biological_process GO:0035999 tetrahydrofolate interconversion
cellular_component GO:0005575 cellular_component
molecular_function GO:0004372 glycine hydroxymethyltransferase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G001720.1Lsi05G001720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001085Serine hydroxymethyltransferasePANTHERPTHR11680SERINE HYDROXYMETHYLTRANSFERASEcoord: 6..115
score: 6.4
IPR001085Serine hydroxymethyltransferasePFAMPF00464SHMTcoord: 9..65
score: 5.9
IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2GENE3DG3DSA:3.90.1150.10coord: 9..116
score: 1.9
IPR015424Pyridoxal phosphate-dependent transferaseunknownSSF53383PLP-dependent transferasescoord: 11..115
score: 2.24
NoneNo IPR availablePANTHERPTHR11680:SF7SERINE HYDROXYMETHYLTRANSFERASE 6-RELATEDcoord: 6..115
score: 6.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G001720Cucumber (Gy14) v1cgylsiB003
Lsi05G001720Cucurbita maxima (Rimu)cmalsiB316
Lsi05G001720Cucurbita maxima (Rimu)cmalsiB690
Lsi05G001720Cucurbita moschata (Rifu)cmolsiB304
Lsi05G001720Cucurbita moschata (Rifu)cmolsiB683
Lsi05G001720Cucurbita pepo (Zucchini)cpelsiB177
Lsi05G001720Cucurbita pepo (Zucchini)cpelsiB369
Lsi05G001720Wild cucumber (PI 183967)cpilsiB209
Lsi05G001720Cucumber (Chinese Long) v2culsiB211
Lsi05G001720Melon (DHL92) v3.5.1lsimeB368
Lsi05G001720Watermelon (Charleston Gray)lsiwcgB332
Lsi05G001720Watermelon (97103) v1lsiwmB361
Lsi05G001720Cucumber (Gy14) v2cgyblsiB198
Lsi05G001720Melon (DHL92) v3.6.1lsimedB384
Lsi05G001720Silver-seed gourdcarlsiB039
Lsi05G001720Silver-seed gourdcarlsiB595
Lsi05G001720Cucumber (Chinese Long) v3cuclsiB230
Lsi05G001720Watermelon (97103) v2lsiwmbB329
Lsi05G001720Wax gourdlsiwgoB431