Lsi05G001660 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr05 : 2381828 .. 2389095 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGTAATGCTTACGGATTCTTATCCTCATAAAGATTTGGTTTCAAAACGTGAAGACAAGCTGCTACTACTACTAATGGCTTCATAAACAATTTTTTTCTTTTAGAAAAAAATAAATTGAGAAAAGGGAAATTACTATAAAAAAATATATATATATATCAAACTATTTACAAATATAGAAAAATTTCATTGTCTATTATTGATAGACCGTAGACAGTAAAATTTTTCTATATTTGTAAATATTTGTAAATAGTTTTGCTCATTTTTCTATATTTAAAAACAGTTATTATAAGTTTTTTCTCTTAATTTTAAGGTTTATTTGGATTGACTAGAGAAAAAAAAATGTTTTTTAAAAAATTCATTTTTATTTAAACTCTTTTGATAAAATTTAGTTAAAATATACTTCAAAGCCTATTTTGAAGGATTGTCAAAACACTTTTTTTTCTTTCAAAATTAAACACTTGAAAAGTTAATCCAAACCCACCATTAATATTCGTTTAATATTTTGAAAAAATGACCCCTACATTTTGTTTAGTTTGGATCTGCCTTTAACCTATTTGATATCTTTTAAAAATAAGGAATCTATTTAGCTTAAAATTAAATTTTATGTCTAATAGAACTTTGAACTTTCTATTTTATCTCCTATTAGATACAAATTCAATTTTATATCTAACAAATATATATATTATCAAGTACTTATACTCAAAATTAAGGGTAATTACAATGAGTAGCATTTGGGCTAATAATTAGGTGTATGACAACGTTTTTAAAGAATTACAAATATAGCAATGTCTATCCACGATAGAGTCTCATTGATAGACCTGAGAGCTGGATCTACATTTTGCTACATATTCTGCAAATTCTTTTGTATTGGATTATATCTACTAATACTTTTGTCTTATTGTTATATTATGCAACTGCTCCCAAAATTAAAGGTTAAAAAACTCATTGACCAATTTTATAGTACAAAGTATATTAAACATAAGATTGAAAGTTTAAAGAACTATTAGATATTTTTCAAAGTGCAAAGATTGTGCTTATAATTTAGGAAAATTTTCACAAATAGAAAAAATTTCAAACTATTTATAGAAATAGCAAAAAAAAACACTGATAGACATTGATAGACTTCTATCAGCATCTATCAGTGATAGACTTCTATCATTTCTATTACTGATAGACCCTGATAAACTTCTATCAGCGTCTATCACAACTATCTAAAAATTTTGCTATTTTGTGTAAATATTTTCCCTTGTTTTTTTATTTTTAAAAATCCCCCTATAATTTAACATTTTTTTTTATCGATCCTTGAAAAAACCTATTTATTTTTATCCAAAAAAATAATGATAATTTCTACTCATTTATTAAATGTAATATAATTAGAGAGCGACTAGTAAAGCTAAAATGAGCATAACTCAACTGATATAGTACTTGTACTATTAATCTCGAACTTAGAGATTCAATTCTTCTACTCTGCATATTATCAGAAGAGACAAGTGTCTAACTTGAGTGCTAAACAATTGAGGCACTCTATTTGTTTTGTTCTTTTCTTTATGAATATTTGAATTTGTTTTTGTATAGAAAAATCGTCTATGATATCATCGAAACCAAAGAATGAATGAAGAGATTGAACTTAGAAAATAAATACCTTTATCCTTCATGAGATTTTCCAAATAATCTTATCGATGTCCCTCATATTTTTCTTTAAAAAAAAGACTAATTTATACAAAATATCCCTAAACTTTGTACTTTGTATCAAAAATAACTTTGAACTAAAACATCCCTCAAACTTTCAAAAAGAGTTCGAAAATTCCCTTAGATTACTGTTAGTTTTGGATCGAAACTGTTATTATTTTGTTTTAAAAATACTGTGAACTTTCAAAAGTTTAAAAAATACTCTTAAAACCTAGAAAAATATCATTACTGTTAGTATATGAACACAAACCATTAAGACTCATTTCAAAAATATTCTTAAACTTTCAAAAGTTGCATTAATATTCTTAGCCTTACAAAAAAAAATTAAAATGTTATTACCATTAGTATAGTGATCAATTTGTTTGAAGTTTTCTTGAGTTCGAAAAAAATCAATTTTAAAACAAATTATATAGATATCCTCTTTTTCTTTCATATAGATAATCTCGTTTTTCTCTTATTTGTTCGATTCTTACATCAATTTTCATACAACAAAATATAGACCAAAACTTTAAGTTTTAAATCCCACAACATCTCACAAAATTCCAAAATCAAAATCTCCACCTAAAACTTACCAAAACAATAAATAGCCAAATACAAAAAGGATGTATCGGCTATCAATACACACTCAACTATTAGCGTACAACCTTGTTAAAACATATAAGTTCTTAGGTCCCCTTGGTTCTTCCATTATTCTCTTTCTTTTTATTATAATCCAATCTTATATACCTTGACAGAATAGGGCAATTTTTTTATGAGATAAACAAATATTAAGATCATAGACTGAAGTAGGGGAAAGAGAAGAAATGGAAGTTGAAGTAGGGGAAAGAGAAGAAATGGAAGTTGAAGTAGGGGAGAGAGAAGAAATGGAAGAGGGAGGCGATATGATGTAGATAAACAGTAAGCGTATTATTAACATTTTTTAAGTAAGTGTACTAATGCAACTTTTGAAAATTTAGAATTATTTTTACAACGAGATATTAACATATTCTATTTATATATTAACAGTAAGGGTATTTTTCAACTTTTTTTTTTTTAGTTTAAGGGTACTTTCGATACTTCATGTATATTTTTTAAACAAAACACTAAAGGTTTGAGGGTAGTTTTGAAACTTTTGAAAGTTTAAAAATATTTTTGACACAAGATGTAAAGTTCAATGGCACTTTTTATAATTTAGCCTTAAAAAATTTATTAACGTTAAAATTGACTATTGACAAATTTAAATGTGAATTCGTGGATGTTGGAGAAGGAAAAAGTCATTTAAAAGAAAAATTCTTTTAAGTAATCCTCTAAATTTCTAAGAAGTGATTGAAATTTCTAAGTTTTCTTTTCTTAAATTACATTTTTCTCTCTCTAAATTCTCCATCAATTCACTAAATACTTATGTCATGTAAGTTTATCATTAATCAATTTTAGCATTCAATTTTAGAATATCCCTAATTAAGCATGATCAAAATAGTGTCACCAAAACCACATCAACACAAGAAAATTGTCGAATAAACTTTTGTGAAAGCATAATCTTTGTGAAATCTCATGAACCAACAAAGAGCATAATATTTCACTTAATTTCACCTTAACAAATGGACTTGACAAGTGGTTTGAAATGGTAGTAAATAGTAAATAAAACTAAGAGAAAGCATAGATAAGGAGAATTGTATTGGCAATTAACTAACTAGATCTTCTTCCTTGTGGGTCTCAATGACAACATTTGACTGAGGGTAAGCAACACAAGTTAAAACCCAACCTTCTTCAGCCTGATCGTCATCAAGGAAGCTGCCATCTGACTGATCCACCTTCCCTGATACTACTTTCCCTGCACAAGAAGAGCAAGACCCTGCCCTGCATGAGTAAGGAAGATCAATTCCCAACTCCTCTGCTTGATCTAGAATGTATACATCATCAGGGCAGCTGAACTCCTTCTCTCCTTCTGGTGTGATCAGCTTCACGTTGTACTCCGCCATCGCAATCACTCGCCCGCCACGGCTGCCGCCCTTCAGCCCAAACATACCCTGGCTGAAGTTCGACACCGACCGTAGCCTCGTTGCTGGCTGCTTCCGGAGGAAGGAGGTGTTCATCGTGGCGCCGGAAAGTGCTGGTGTACTGGCCATTATGCTGTTCTATCACTGCTACAAGGTGCAAAGAGGAATTGGGTTATTAAATATGGCTGCTGCTTTTATGGTTTATCAACCCTGCAAGAGGAGTCCACACCTGCAGATAAGAAATATGGAAGGCTACAGCTAATGTTATCCATAGAATGAGAGGCCATGGCTGCCACACGCTCCTCTACCTTCCAACAGAATTGTATGGCCTTCATGTAATCTTGTAGATCATTCTAGACCTTTCTCTTTTCTCCATTTATTTCTTATTGTCTAGAAAGAAAGAAAAAGAAAGTTTATTTTCCTTTTCTTTTTCATTTAAGTCACACAAAAGTTTCAGTATTTTGGTTTCTTATATTTGTCTAATTTTCCCACTATATCTTTTTCTTCCTCCACACATCTACATTAGGGATGGCAAAATTTCCCGTGGGGTCGGGTCCCCGACCCTAACGGGGCGGGGAATCCTCGGTTTAACCGGGTATGGGGTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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mRNA sequence

ATGAATGGGCAGCTGAACTCCTTCTCTCCTTCTGGTGTGATCAGCTTCACGTTGTACTCCGCCATCGCAATCACTCGCCCGCCACGGCTGCCGCCCTTCAGCCCAAACATACCCTGGCTGAAGTTCGACACCGACCGTAGCCTCGTTGCTGGCTGCTTCCGGAGGAAGGAGGTGTTCATCGTGGCGCCGGAAAGTGCTGGTGTACTGGCCATTATGCTGTTCTATCACTGCTACAAGGTGCAAAGAGGAATTGGGTTATTAAATATGGCTGCTGCTTTTATGGCTACAGCTAATGTTATCCATAGAATGAGAGGCCATGGCTGCCACACGCTCCTCTACCTTCCAACAGAATTGTATGGCCTTCATGTAATCTTGTATTACTGCGTTGCTAGGCCTCCCATGTGTCAAGGGCTTCTCGAAGTTATTGCCTCCACTATCAAAATGCTTCAAGGTAGCGTAGGTCTTTCGCTTCCAAAAATACCCCTAATCGCATTTGATGTTTCTGTAGATCCTCCGTACGAACAAATTGGAACCCAGTTCCAGAAGGATGTAAAGACAAAATACATCTCTATGAAAATACTACCAAAAGGCAGCAATCCTCCCATCATGGAGACTACAGATGGTGTGAGGTACCATTTCTTCTCAGGGATAGGACGAGGAATAGTCTTCACACGACATGGATTGTTAGGGGCACCACTCCAGTTTCGTCCAATAACCGTACCAAGAAGAGCCAAAGGAAAAGAAATGAAAGCCCAAATGACAAAGACCACAACCATTGTACCAAAAGGAATGGCTGCTAGAGACCCATAG

Coding sequence (CDS)

ATGAATGGGCAGCTGAACTCCTTCTCTCCTTCTGGTGTGATCAGCTTCACGTTGTACTCCGCCATCGCAATCACTCGCCCGCCACGGCTGCCGCCCTTCAGCCCAAACATACCCTGGCTGAAGTTCGACACCGACCGTAGCCTCGTTGCTGGCTGCTTCCGGAGGAAGGAGGTGTTCATCGTGGCGCCGGAAAGTGCTGGTGTACTGGCCATTATGCTGTTCTATCACTGCTACAAGGTGCAAAGAGGAATTGGGTTATTAAATATGGCTGCTGCTTTTATGGCTACAGCTAATGTTATCCATAGAATGAGAGGCCATGGCTGCCACACGCTCCTCTACCTTCCAACAGAATTGTATGGCCTTCATGTAATCTTGTATTACTGCGTTGCTAGGCCTCCCATGTGTCAAGGGCTTCTCGAAGTTATTGCCTCCACTATCAAAATGCTTCAAGGTAGCGTAGGTCTTTCGCTTCCAAAAATACCCCTAATCGCATTTGATGTTTCTGTAGATCCTCCGTACGAACAAATTGGAACCCAGTTCCAGAAGGATGTAAAGACAAAATACATCTCTATGAAAATACTACCAAAAGGCAGCAATCCTCCCATCATGGAGACTACAGATGGTGTGAGGTACCATTTCTTCTCAGGGATAGGACGAGGAATAGTCTTCACACGACATGGATTGTTAGGGGCACCACTCCAGTTTCGTCCAATAACCGTACCAAGAAGAGCCAAAGGAAAAGAAATGAAAGCCCAAATGACAAAGACCACAACCATTGTACCAAAAGGAATGGCTGCTAGAGACCCATAG

Protein sequence

MNGQLNSFSPSGVISFTLYSAIAITRPPRLPPFSPNIPWLKFDTDRSLVAGCFRRKEVFIVAPESAGVLAIMLFYHCYKVQRGIGLLNMAAAFMATANVIHRMRGHGCHTLLYLPTELYGLHVILYYCVARPPMCQGLLEVIASTIKMLQGSVGLSLPKIPLIAFDVSVDPPYEQIGTQFQKDVKTKYISMKILPKGSNPPIMETTDGVRYHFFSGIGRGIVFTRHGLLGAPLQFRPITVPRRAKGKEMKAQMTKTTTIVPKGMAARDP

Homology

[Close]

BLAST of Lsi05G001660 vs. TrEMBL
Match: A0A0A9IYT5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 1


Query: 191 MKILPKGSNPPIMETTDGVRYHFFSGIGRGIVFTRHGLLGAPLQFRPITVPRRAKGKEMK 250
           MK+LPKGS+PPI E T+GVRYHFFSGIGRGIVFTR GLLGAPLQF P TVPR  KGKEMK
Sbjct: 1   MKMLPKGSSPPINEMTEGVRYHFFSGIGRGIVFTRQGLLGAPLQFLPTTVPRSTKGKEMK 60

Query: 251 AQMTKTTTIVPKGMAARD 269
           AQ T  TTIVP G+AA D
Sbjct: 61  AQSTNMTTIVPNGIAAND 78

[Close]

BLAST of Lsi05G001660 vs. TrEMBL
Match: A0A0A9QLW4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.2e-26
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 191 MKILPKGSNPPIMETTDGVRYHFFSGIGRGIVFTRHGLLGAPLQFRPITVPRRAKGKEMK 250
           MK+LPKG +PPI E T+GVRYHFFSGIGRGIVFTRHGLLGAPLQF P TVP   KGKEMK
Sbjct: 1   MKMLPKGRSPPINEITEGVRYHFFSGIGRGIVFTRHGLLGAPLQFLPTTVPNSTKGKEMK 60

Query: 251 AQMTKTTTIVPKGMAARD 269
           AQ T  TTIVP G+AA D
Sbjct: 61  AQRTNMTTIVPNGIAAND 78

[Close]

BLAST of Lsi05G001660 vs. TrEMBL
Match: A0A0A9LE18_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.2e-26
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 191 MKILPKGSNPPIMETTDGVRYHFFSGIGRGIVFTRHGLLGAPLQFRPITVPRRAKGKEMK 250
           MK+LPKG +PPI E T+GVRYHFFSGIGRGIVFTRHGLLGAPLQF P TVP   KGKEMK
Sbjct: 1   MKMLPKGRSPPINEITEGVRYHFFSGIGRGIVFTRHGLLGAPLQFLPTTVPSSTKGKEMK 60

Query: 251 AQMTKTTTIVPKGMAARD 269
           AQ T  TTIVP G+AA D
Sbjct: 61  AQRTNMTTIVPNGIAAND 78

The following BLAST results are available for this feature:

BLAST of Lsi05G001660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G001660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A9IYT5_ARUDO	1.9e-26	79.49	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A0A9QLW4_ARUDO	3.2e-26	78.21	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A0A9LE18_ARUDO	4.2e-26	78.21	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]

BLAST of Lsi05G001660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G001660 vs. NCBI nr


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001660.1	Lsi05G001660.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001660	CmoCh16G004190	Cucurbita moschata (Rifu)	cmolsiB304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001660	Wax gourd	lsiwgoB431
Lsi05G001660	Cucumber (Gy14) v1	cgylsiB003
Lsi05G001660	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001660	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001660	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001660	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001660	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001660	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001660	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001660	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001660	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001660	Watermelon (97103) v1	lsiwmB361
Lsi05G001660	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001660	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001660	Silver-seed gourd	carlsiB039
Lsi05G001660	Silver-seed gourd	carlsiB595
Lsi05G001660	Cucumber (Chinese Long) v3	cuclsiB230
Lsi05G001660	Watermelon (97103) v2	lsiwmbB329