Lsi05G001650 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	2Fe-2S ferredoxin, iron-sulphur binding site
Location	chr05 : 2380884 .. 2381677 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGCACCACCGCACTCACCGCCCCTTTTCCGGCCACCTCCTTCCTCCGGCGGAATCCGGCTGGAGGAGTGAGCCTAAGGCCATTTGCCAACGTGGGTCAGTCTCTGTTCGGGCTGAAACACGGCGGTAGCCGCGGCGGACGAGTGACGGCGATGGCCTACAAGGTGACCCTCATAACCCCAGATGGAGAGAAATCGATTACATGTAGTGGTGATGATTACATTTTAGATGCGGCTGAGGAAAACGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCTTGCATTGGCAAAGTGAAATCAGGGAAATTAGATCAATCTGATAATAGTTTTCTTGATGATGATCAAATGGCTGATGGTTGGGTTTTAACTTGTGTTGCTAGGCCTGAATCTGATCTTGTAATTGAGACCCACAAGGAAGATGCATTTTCTGGTTAAAACAGAGGAACAAGAAGGGGGAAAGGAGGATTAAACTTTTTTTTTTTTTCTTTTCTTTTCAATCTTTGTTGATGAGAGTAAGCAAAATGGACACTGTTTTCTTAGCTTGATGATGATGATGATGATGATGATGATATCTCTCTTTCTAAGTGTTTGTTGAATGTTGTATTGTTCATCACTGGTTTATGTTGATTTTCACAACTTGGGTTTTGTTCATCTGTTGTTGGTTGGGTTGTTTTGTTCCTTTTCTTTTAGCTTAATGTATCTATGTAGGCTTCCCTTGGTATCCGTTTTGTTTTTTGTTTGGTTCATTTTCATTTCCTTTTGGCTTAAGATGTGAATGA

mRNA sequence

ATGGGCAGCACCACCGCACTCACCGCCCCTTTTCCGGCCACCTCCTTCCTCCGGCGGAATCCGGCTGGAGGAGTGAGCCTAAGGCCATTTGCCAACGTGGGTCAGTCTCTGTTCGGGCTGAAACACGGCGGTAGCCGCGGCGGACGAGTGACGGCGATGGCCTACAAGGTGACCCTCATAACCCCAGATGGAGAGAAATCGATTACATGTAGTGGTGATGATTACATTTTAGATGCGGCTGAGGAAAACGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCTTGCATTGGCAAAGTGAAATCAGGGAAATTAGATCAATCTGATAATAGTTTTCTTGATGATGATCAAATGGCTGATGGCTTCCCTTGGTATCCGTTTTGTTTTTTGTTTGGTTCATTTTCATTTCCTTTTGGCTTAAGATGTGAATGA

Coding sequence (CDS)

ATGGGCAGCACCACCGCACTCACCGCCCCTTTTCCGGCCACCTCCTTCCTCCGGCGGAATCCGGCTGGAGGAGTGAGCCTAAGGCCATTTGCCAACGTGGGTCAGTCTCTGTTCGGGCTGAAACACGGCGGTAGCCGCGGCGGACGAGTGACGGCGATGGCCTACAAGGTGACCCTCATAACCCCAGATGGAGAGAAATCGATTACATGTAGTGGTGATGATTACATTTTAGATGCGGCTGAGGAAAACGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCTTGCATTGGCAAAGTGAAATCAGGGAAATTAGATCAATCTGATAATAGTTTTCTTGATGATGATCAAATGGCTGATGGCTTCCCTTGGTATCCGTTTTGTTTTTTGTTTGGTTCATTTTCATTTCCTTTTGGCTTAAGATGTGAATGA

Protein sequence

MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQMADGFPWYPFCFLFGSFSFPFGLRCE

Homology

[Close]

BLAST of Lsi05G001650 vs. Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-36
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++    TSF+RR+PA  +SLR  P AN  QSLFGLK G +RGGRVTAMA YKV  
Sbjct: 2   ASTALSSAIVGTSFIRRSPAP-ISLRSLPSANT-QSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITP+GE  + C  D Y+LDAAEE G+DLPYSCRAG+CSSC GKV SG +DQSD SFLDD+
Sbjct: 62  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMADGF 126
           Q+ +GF
Sbjct: 122 QIGEGF 125

[Close]

BLAST of Lsi05G001650 vs. Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-36
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++   +TSFLRR     +SLR  PFAN  QSLFGLK   +RGGRVTAMA YKV  
Sbjct: 2   ASTALSSAIVSTSFLRRQQTP-ISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITP+GE+ + C  D Y+LDAAEE GLDLPYSCRAG+CSSC GKV SG +DQSD SFLDD+
Sbjct: 62  ITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDE 121

Query: 123 QMADGF 126
           QM++G+
Sbjct: 122 QMSEGY 125

[Close]

BLAST of Lsi05G001650 vs. Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.9e-31
Identity = 73/133 (54.89%), Postives = 93/133 (69.92%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAM-AYKVTLIT 62
           +T AL+    +T+F  + P    +L    NVG++LFGLK   SR GRVTAM AYKVTL+T
Sbjct: 4   TTAALSGATMSTAFAPKTPPMTAALP--TNVGRALFGLKSSASR-GRVTAMAAYKVTLVT 63

Query: 63  PDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQM 122
           P+G++ + C  D YILDAAEE G+DLPYSCRAG+CSSC GKV SG ++Q D SFLDDDQ+
Sbjct: 64  PEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQI 123

Query: 123 ADGFPWYPFCFLF 135
            +G  W   C  +
Sbjct: 124 KEG--WVLTCVAY 131

[Close]

BLAST of Lsi05G001650 vs. Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 9.9e-31
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITP 62
           + T  T    AT+F+ +  A  +     +N G+SLFGLK G SRGGR+T  AYKVTL+TP
Sbjct: 2   AATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTG-SRGGRMTMAAYKVTLVTP 61

Query: 63  DGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQMA 122
            G     C  D YILDAAEE G+DLPYSCRAG+CSSC GK+K+G L+Q D SFLDDDQ+ 
Sbjct: 62  TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 121

Query: 123 DGF 126
           +G+
Sbjct: 122 EGW 123

[Close]

BLAST of Lsi05G001650 vs. Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-30
Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = 1


Query: 13  ATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMA-YKVTLITPDGEKSITCS 72
           +TSFL R PA   SL+  +NVG++LFGLK G  R GR+T MA YKV LITP+G     C 
Sbjct: 10  STSFLPRKPAV-TSLKAISNVGEALFGLKSG--RNGRITCMASYKVKLITPEGPIEFECP 69

Query: 73  GDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQMADGF 126
            D YILD AEE G DLPYSCRAG+CSSC GKV +G +DQSD +FLD+DQ A GF
Sbjct: 70  DDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGF 120

[Close]

BLAST of Lsi05G001650 vs. TrEMBL
Match: A0A0A0L764_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G222800 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 5.2e-47
Identity = 92/125 (73.60%), Postives = 108/125 (86.40%), Query Frame = 1


Query: 1   MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLI 60
           M STTA+T+PFPATSF+RRNP GGVS +PF N+G+SL+GLKH   RGGR+   AYKV LI
Sbjct: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKH---RGGRLAMKAYKVKLI 60

Query: 61  TPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQ 120
           TPDGEK++ C  D YILDAAEE+GLDLPYSCRAGACSSC+GKV SGKLDQSD SFLDD+Q
Sbjct: 61  TPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQ 120

Query: 121 MADGF 126
           +A+G+
Sbjct: 121 VAEGW 122

[Close]

BLAST of Lsi05G001650 vs. TrEMBL
Match: A0A0D3AAH8_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 83/126 (65.87%), Postives = 98/126 (77.78%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++    TSFLRR  A  +SLR  P AN  QSLFGLK G +RGGRVTAMA YKV  
Sbjct: 2   ASTALSSAIVGTSFLRRQTAP-ISLRSLPSANT-QSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITP+GE+ + C  D Y+LDAAEE G+DLPYSCRAG+CSSC GKV SG +DQSD SFLDDD
Sbjct: 62  ITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDD 121

Query: 123 QMADGF 126
           Q+A+GF
Sbjct: 122 QIAEGF 125

[Close]

BLAST of Lsi05G001650 vs. TrEMBL
Match: A0A078EW28_BRANA (BnaC01g28900D protein OS=Brassica napus GN=BnaC01g28900D PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 83/126 (65.87%), Postives = 98/126 (77.78%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++    TSFLRR  A  +SLR  P AN  QSLFGLK G +RGGRVTAMA YKV  
Sbjct: 2   ASTALSSAIVGTSFLRRQTAP-ISLRSLPSANT-QSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITP+GE+ + C  D Y+LDAAEE G+DLPYSCRAG+CSSC GKV SG +DQSD SFLDDD
Sbjct: 62  ITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDD 121

Query: 123 QMADGF 126
           Q+A+GF
Sbjct: 122 QIAEGF 125

[Close]

BLAST of Lsi05G001650 vs. TrEMBL
Match: D7KW69_ARALL (Fed A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_893437 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-34
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++    TSF+RR+PA  +SLR  P AN  QSLFGLK G +RGGRVTAMA YKV  
Sbjct: 2   ASTALSSAIVGTSFIRRSPAP-ISLRSLPSANT-QSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITP+GE+ + C  D Y+LDAAEE G+DLPYSCRAG+CSSC GKV SG +DQSD SFLDD+
Sbjct: 62  ITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMADGF 126
           Q+  GF
Sbjct: 122 QIGQGF 125

[Close]

BLAST of Lsi05G001650 vs. TrEMBL
Match: A0A078E733_BRANA (BnaA06g06760D protein OS=Brassica napus GN=BnaA06g06760D PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.0e-34
Identity = 83/126 (65.87%), Postives = 96/126 (76.19%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++   +T FLRR      SLR  P AN  QSLFGLK   SRGGRVTAMA YKV  
Sbjct: 2   ASTALSSVTVSTPFLRRQQTPN-SLRSLPAANT-QSLFGLKSSTSRGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITPDGEK + C GD Y+LDAAEE+GLDLPYSCRAGACSSC GK+ SG +DQSD SFLDD 
Sbjct: 62  ITPDGEKEVECDGDTYVLDAAEESGLDLPYSCRAGACSSCAGKIVSGSVDQSDQSFLDDG 121

Query: 123 QMADGF 126
           Q+++GF
Sbjct: 122 QISEGF 125

[Close]

BLAST of Lsi05G001650 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-37
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++    TSF+RR+PA  +SLR  P AN  QSLFGLK G +RGGRVTAMA YKV  
Sbjct: 2   ASTALSSAIVGTSFIRRSPAP-ISLRSLPSANT-QSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITP+GE  + C  D Y+LDAAEE G+DLPYSCRAG+CSSC GKV SG +DQSD SFLDD+
Sbjct: 62  ITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDE 121

Query: 123 QMADGF 126
           Q+ +GF
Sbjct: 122 QIGEGF 125

[Close]

BLAST of Lsi05G001650 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-37
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++   +TSFLRR     +SLR  PFAN  QSLFGLK   +RGGRVTAMA YKV  
Sbjct: 2   ASTALSSAIVSTSFLRRQQTP-ISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITP+GE+ + C  D Y+LDAAEE GLDLPYSCRAG+CSSC GKV SG +DQSD SFLDD+
Sbjct: 62  ITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDE 121

Query: 123 QMADGF 126
           QM++G+
Sbjct: 122 QMSEGY 125

[Close]

BLAST of Lsi05G001650 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-22
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = 1


Query: 14  TSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITPDG-EKSITCSG 73
           T+ L  N +  +S+     V +S FGLK   + GG   +  YKV L+ PDG E       
Sbjct: 21  TNKLITNKSYNLSVGSTKRVSRS-FGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQD 80

Query: 74  DDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQMADGF 126
           D YILDAAEE G+DLPYSCRAGACS+C G++ SG +DQSD SFL+D  +  G+
Sbjct: 81  DQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGY 132

[Close]

BLAST of Lsi05G001650 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 80.5 bits (197), Expect = 9.5e-16
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 38  FGLKHGGSRGGRVTAM-AYKVTLITPDGEKS-ITCSGDDYILDAAEENGLDLPYSCRAGA 97
           FGL       G+V A  + KV LI+P+GE+  I  + D  IL++AE  GL+LPYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 98  CSSCIGKVKSGKLDQSDNSFLDDDQMADGF 126
           C +C GK+ SGK+DQS  SFL+++Q+  G+
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGY 125

[Close]

BLAST of Lsi05G001650 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 38/123 (30.89%), Postives = 55/123 (44.72%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLITP 62
           ST +L  P+ + SF            P  N   S    +      GR+ A AYKV +   
Sbjct: 11  STISLPKPYLSNSFSF----------PLRNATLSTTTNRRNFLTTGRIIARAYKVVVEHD 70

Query: 63  DGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQMA 122
                +    D+ IL  A ++GLD+PY C  G C +C  K+ +G +DQS    L DD + 
Sbjct: 71  GKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDVVE 122

Query: 123 DGF 126
            G+
Sbjct: 131 RGY 122

[Close]

BLAST of Lsi05G001650 vs. NCBI nr
Match: gi|659112074|ref|XP_008456052.1| (PREDICTED: ferredoxin-like [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 103/125 (82.40%), Postives = 112/125 (89.60%), Query Frame = 1


Query: 1   MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLI 60
           MGSTTA T+PFPATSFLRRNP GGVSL+PF N+G+SLFGLKH   RGGRVTAMAY V LI
Sbjct: 1   MGSTTAFTSPFPATSFLRRNPTGGVSLKPFPNMGESLFGLKH---RGGRVTAMAYNVKLI 60

Query: 61  TPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQ 120
           TP+GEKSITC  D YILDAAEENG+DLPYSCRAGACSSCIGKV SGKLDQSD SFLDDDQ
Sbjct: 61  TPEGEKSITCPDDAYILDAAEENGIDLPYSCRAGACSSCIGKVVSGKLDQSDQSFLDDDQ 120

Query: 121 MADGF 126
           +A+G+
Sbjct: 121 VAEGW 122

[Close]

BLAST of Lsi05G001650 vs. NCBI nr
Match: gi|449457045|ref|XP_004146259.1| (PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 7.5e-47
Identity = 92/125 (73.60%), Postives = 108/125 (86.40%), Query Frame = 1


Query: 1   MGSTTALTAPFPATSFLRRNPAGGVSLRPFANVGQSLFGLKHGGSRGGRVTAMAYKVTLI 60
           M STTA+T+PFPATSF+RRNP GGVS +PF N+G+SL+GLKH   RGGR+   AYKV LI
Sbjct: 1   MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKH---RGGRLAMKAYKVKLI 60

Query: 61  TPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDDQ 120
           TPDGEK++ C  D YILDAAEE+GLDLPYSCRAGACSSC+GKV SGKLDQSD SFLDD+Q
Sbjct: 61  TPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQ 120

Query: 121 MADGF 126
           +A+G+
Sbjct: 121 VAEGW 122

[Close]

BLAST of Lsi05G001650 vs. NCBI nr
Match: gi|922492800|ref|XP_013585545.1| (PREDICTED: LOW QUALITY PROTEIN: ferredoxin-1, chloroplastic [Brassica oleracea var. oleracea])

HSP 1 Score: 156.4 bits (394), Expect = 3.9e-35
Identity = 83/126 (65.87%), Postives = 99/126 (78.57%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++   +TSFLRR  +  +SLR  P AN  QSLFGLK   SRGGRVTAMA YKV  
Sbjct: 2   ASTALSSVTVSTSFLRRKQSP-ISLRSLPVANT-QSLFGLKPSTSRGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITPDGEK + C GD Y+LDAA E+G+DLPYSCRAGACSSC GK+ SG +DQSD SFLDDD
Sbjct: 62  ITPDGEKEVKCDGDTYVLDAAXESGMDLPYSCRAGACSSCAGKIVSGSVDQSDQSFLDDD 121

Query: 123 QMADGF 126
           Q+++GF
Sbjct: 122 QISEGF 125

[Close]

BLAST of Lsi05G001650 vs. NCBI nr
Match: gi|727484324|ref|XP_010418043.1| (PREDICTED: ferredoxin, leaf L-A [Camelina sativa])

HSP 1 Score: 156.0 bits (393), Expect = 5.1e-35
Identity = 83/126 (65.87%), Postives = 99/126 (78.57%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++    TSF+RR+ A  +SLR  P AN  QSLFGLK G +RGGRVTAMA YKV  
Sbjct: 2   ASTALSSAIVGTSFIRRSTAP-ISLRSLPLANT-QSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITP+GE+ + C  D Y+LDAAEE G+DLPYSCRAG+CSSC GKV SG +DQSD SFLDDD
Sbjct: 62  ITPEGEQVVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVDQSDQSFLDDD 121

Query: 123 QMADGF 126
           QMA+GF
Sbjct: 122 QMAEGF 125

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BLAST of Lsi05G001650 vs. NCBI nr
Match: gi|922406177|ref|XP_013596817.1| (PREDICTED: ferredoxin, leaf L-A-like [Brassica oleracea var. oleracea])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 83/126 (65.87%), Postives = 98/126 (77.78%), Query Frame = 1


Query: 3   STTALTAPFPATSFLRRNPAGGVSLR--PFANVGQSLFGLKHGGSRGGRVTAMA-YKVTL 62
           ++TAL++    TSFLRR  A  +SLR  P AN  QSLFGLK G +RGGRVTAMA YKV  
Sbjct: 2   ASTALSSAIVGTSFLRRQTAP-ISLRSLPSANT-QSLFGLKSGTARGGRVTAMATYKVKF 61

Query: 63  ITPDGEKSITCSGDDYILDAAEENGLDLPYSCRAGACSSCIGKVKSGKLDQSDNSFLDDD 122
           ITP+GE+ + C  D Y+LDAAEE G+DLPYSCRAG+CSSC GKV SG +DQSD SFLDDD
Sbjct: 62  ITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDD 121

Query: 123 QMADGF 126
           Q+A+GF
Sbjct: 122 QIAEGF 125

The following BLAST results are available for this feature:

BLAST of Lsi05G001650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER2_ARATH	2.7e-36	64.29	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1	[more]
FER1_ARATH	3.5e-36	64.29	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1	[more]
FER1_MESCR	9.9e-31	54.89	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
FER1_SPIOL	9.9e-31	56.10	Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2	[more]
FER1_SOLLC	1.7e-30	62.28	Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1	[more]

BLAST of Lsi05G001650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L764_CUCSA	5.2e-47	73.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G222800 PE=4 SV=1	[more]
A0A0D3AAH8_BRAOL	1.0e-34	65.87	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078EW28_BRANA	1.0e-34	65.87	BnaC01g28900D protein OS=Brassica napus GN=BnaC01g28900D PE=4 SV=1	[more]
D7KW69_ARALL	2.3e-34	64.29	Fed A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_893437 PE=4 SV=1	[more]
A0A078E733_BRANA	3.0e-34	65.87	BnaA06g06760D protein OS=Brassica napus GN=BnaA06g06760D PE=4 SV=1	[more]

BLAST of Lsi05G001650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60950.1	1.5e-37	64.29	2Fe-2S ferredoxin-like superfamily protein	[more]
AT1G10960.1	2.0e-37	64.29	ferredoxin 1	[more]
AT2G27510.1	1.1e-22	48.67	ferredoxin 3	[more]
AT5G10000.1	9.5e-16	47.78	ferredoxin 4	[more]
AT4G14890.1	1.1e-08	30.89	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of Lsi05G001650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112074\|ref\|XP_008456052.1\|	1.3e-51	82.40	PREDICTED: ferredoxin-like [Cucumis melo]	[more]
gi\|449457045\|ref\|XP_004146259.1\|	7.5e-47	73.60	PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus]	[more]
gi\|922492800\|ref\|XP_013585545.1\|	3.9e-35	65.87	PREDICTED: LOW QUALITY PROTEIN: ferredoxin-1, chloroplastic [Brassica oleracea v...	[more]
gi\|727484324\|ref\|XP_010418043.1\|	5.1e-35	65.87	PREDICTED: ferredoxin, leaf L-A [Camelina sativa]	[more]
gi\|922406177\|ref\|XP_013596817.1\|	1.5e-34	65.87	PREDICTED: ferredoxin, leaf L-A-like [Brassica oleracea var. oleracea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0051536	iron-sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR012675	Beta-grasp_dom_sf
IPR010241	Fd_pln
IPR006058	2Fe2S_fd_BS
IPR001041	2Fe-2S_ferredoxin-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009643	photosynthetic acclimation
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0071949	FAD binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001650.1	Lsi05G001650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 61..125 score: 9.4
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 55..146 score: 1
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 46..124 score: 1.44
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 91..99 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 54..125 score: 5.7
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 52..125 score: 8.1
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 16..125 score: 1.7
None	No IPR available	PANTHER	PTHR19370:SF120	FERREDOXIN-1, CHLOROPLASTIC-RELATED	coord: 16..125 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001650	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001650	Silver-seed gourd	carlsiB039
Lsi05G001650	Silver-seed gourd	carlsiB595
Lsi05G001650	Cucumber (Chinese Long) v3	cuclsiB230
Lsi05G001650	Watermelon (97103) v2	lsiwmbB329
Lsi05G001650	Wax gourd	lsiwgoB431
Lsi05G001650	Cucumber (Gy14) v1	cgylsiB003
Lsi05G001650	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001650	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001650	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001650	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001650	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001650	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001650	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001650	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001650	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001650	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001650	Watermelon (97103) v1	lsiwmB361
Lsi05G001650	Cucumber (Gy14) v2	cgyblsiB198