Lsi05G001300 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Reticulon-4-interacting protein 1 like, mitochondrial
Location	chr05 : 1948500 .. 1949834 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTTTATAGGGCATTGAATTCAAAATAAAGGGGAAATTTGATGCCGTTTTGGATACAATTGGTGTGCCAGATACGGAAAGAATTGGCATCCATCTTTTGAATAGAGGTGGACACTATATGACACTTCAGGTATAGAGTCATAAGCTAACCAGTCTCTCTTGAAGTATTGAATTGATGCTCTCTTGACATGGAGGCTTCTAATTGCCTTTTGCTTAGGGCGAGGCTGCATCATTGACTGATAGATATGGACTAGTTATCGGGCTTCCTTTTGCTACAAGTGTACTGATGCAGAAACAGTTCAAGTATAGATTGTCTCATGGAATTGGTAATAATCAAAAGTTTGTATATTTCACCATGTACATTATCTGCTTAAATATAATATCAGAACTGTCCAATTACATTATTGACATCGTGTTCCCTCCTGCTTGAATTTTCCCCATCACTTTATGTGTATTCTTGAGCTTAAATTGTTGAAAAAGCAAGTTTCTTAGAATAAATTTTTAATATGCCTCCAATTTATCACCCTTAAAAGAGCGCTCAAATATGGCATTTGCCATGTAAGGGCTGGTAGAGTTGATTAGTAGGAGAGATTGGGAGCTCCTGAAATCTCCCCAAGTCTGTAACCTCTGTCAAATAGTAGTTTCTACTTTGATCTCTATCATGTTCTCTAGTTCATAGTTCCAGTCCCTTCGGCTTTGACTAGATGTACTTTAATCACTCTTTTGGAAACTGTATTTTTCTGTTTATGCACAATTTTTCAATGCAAATATAATTTTCCAAATCCAATGCTTCAAGGTGAATCCGAGCTTCAGAATATAAAACAAATATATAGATCAACTTTATGCTCCTGTTGTTTAGTAACTTCAATTTTGTTTCTGTTGTTCCTTTTGTTGTTTTAGAATATTGGTGGACATACATGAGGGCAGATTCCGAAGGTTTAGACGAGATCAGGAGGCTATGTGAAGCTGAAAAGCTGAAGATACCGGTCGAGAAAACGTTTCCGATTACACAAGTAGGAGAGGCTCATGATGCAAAGGATAAGAACCTCATTCCTGGTAAAGTGGTGCTAGAGTTTGATTGATGAAAAATCCTCTGATATACTTCATGCATACTTGATTTGTTGGCTCGCGTGCATTAAATCCTGTAAATAATTTTCTCATCTTTTAGCATCAAAATTGCTTTGGAACTTTACAGGATGTGAAAGTTTTATACGCTGTAGATTATCTGCAAAGTGATGTACCTTTTTTAGATTTTTTGCCAGATTAGAGAAGTAGAAAAAGTAAGAAGAGATTCTATTTGGCCTGCTGTTAGACAATACAGTGTTTCTTAA

mRNA sequence

ATGAATGGCATTGAATTCAAAATAAAGGGGAAATTTGATGCCGTTTTGGATACAATTGGTGTGCCAGATACGGAAAGAATTGGCATCCATCTTTTGAATAGAGGTGGACACTATATGACACTTCAGGGCGAGGCTGCATCATTGACTGATAGATATGGACTAGTTATCGGGCTTCCTTTTGCTACAAGTGTACTGATGCAGAAACAGTTCAAGTATAGATTGTCTCATGGAATTGAATATTGGTGGACATACATGAGGGCAGATTCCGAAGGTTTAGACGAGATCAGGAGGCTATGTGAAGCTGAAAAGCTGAAGATACCGGTCGAGAAAACGTTTCCGATTACACAAGTAGGAGAGGCTCATGATGCAAAGGATAAGAACCTCATTCCTGGTAAAGTGATTAGAGAAGTAGAAAAAGTAAGAAGAGATTCTATTTGGCCTGCTGTTAGACAATACAGTGTTTCTTAA

Coding sequence (CDS)

ATGAATGGCATTGAATTCAAAATAAAGGGGAAATTTGATGCCGTTTTGGATACAATTGGTGTGCCAGATACGGAAAGAATTGGCATCCATCTTTTGAATAGAGGTGGACACTATATGACACTTCAGGGCGAGGCTGCATCATTGACTGATAGATATGGACTAGTTATCGGGCTTCCTTTTGCTACAAGTGTACTGATGCAGAAACAGTTCAAGTATAGATTGTCTCATGGAATTGAATATTGGTGGACATACATGAGGGCAGATTCCGAAGGTTTAGACGAGATCAGGAGGCTATGTGAAGCTGAAAAGCTGAAGATACCGGTCGAGAAAACGTTTCCGATTACACAAGTAGGAGAGGCTCATGATGCAAAGGATAAGAACCTCATTCCTGGTAAAGTGATTAGAGAAGTAGAAAAAGTAAGAAGAGATTCTATTTGGCCTGCTGTTAGACAATACAGTGTTTCTTAA

Protein sequence

MNGIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFATSVLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHDAKDKNLIPGKVIREVEKVRRDSIWPAVRQYSVS

Homology

[Close]

BLAST of Lsi05G001300 vs. Swiss-Prot
Match: RT4I1_MOUSE (Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 40/128 (31.25%), Postives = 62/128 (48.44%), Query Frame = 1


Query: 12  FDAVLDTIGVPDTERIGIHLLNR--GGHYMTLQGEAASLTDRYGLVIGLPFATSVLMQKQ 71
           FD +LD +G   TE   ++ L +  G  Y+TL        DR G+  G+   T V +  +
Sbjct: 270 FDFILDNVG-GSTETWALNFLKKWSGATYVTLVTPFLLNMDRLGVADGM-LQTGVTVGTK 329

Query: 72  FKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHDAKDKNLI 131
               L  G+ Y W +  A    LDEI  L +A K++  +E+TFP ++V EA    ++   
Sbjct: 330 ALKHLWQGVHYRWAFFMASGPYLDEIAELVDAGKIRPVIERTFPFSEVPEAFLKVERGHA 389

Query: 132 PGKVIREV 138
            GK +  V
Sbjct: 390 RGKTVVNV 395

[Close]

BLAST of Lsi05G001300 vs. Swiss-Prot
Match: RT4I1_BOVIN (Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 41/135 (30.37%), Postives = 62/135 (45.93%), Query Frame = 1


Query: 5   EFKIKGKFDAVLDTIGVPDTERIGIHLLNR--GGHYMTLQGEAASLTDRYGLVIGLPFAT 64
           + K    FD +LD +G   TE   +  L +  G  Y+TL        DR G+  G+   T
Sbjct: 263 QLKSSKPFDFILDNVG-GSTETWALKFLKKWSGATYVTLVTPFLLNMDRLGIADGM-LQT 322

Query: 65  SVLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHD 124
            V +  +       G+ Y W +  A    LD+I  L EA K++  +EKTFP ++V EA  
Sbjct: 323 GVTVGSKTLKHFWQGVHYRWAFFMASGPCLDDIAELVEAGKIQPVIEKTFPFSKVPEAFL 382

Query: 125 AKDKNLIPGKVIREV 138
             ++    GK +  V
Sbjct: 383 KVERGHARGKTVINV 395

[Close]

BLAST of Lsi05G001300 vs. Swiss-Prot
Match: RT4I1_HUMAN (Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-07
Identity = 38/128 (29.69%), Postives = 59/128 (46.09%), Query Frame = 1


Query: 12  FDAVLDTIGVPDTERIGIHLLNR--GGHYMTLQGEAASLTDRYGLVIGLPFATSVLMQKQ 71
           FD +LD +G   TE      L +  G  Y+TL        DR G+  G+   T V +  +
Sbjct: 270 FDFILDNVG-GSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGM-LQTGVTVGSK 329

Query: 72  FKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHDAKDKNLI 131
                  G+ Y W +  A    LD+I  L +A K++  +E+TFP ++V EA    ++   
Sbjct: 330 ALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHA 389

Query: 132 PGKVIREV 138
            GK +  V
Sbjct: 390 RGKTVINV 395

[Close]

BLAST of Lsi05G001300 vs. TrEMBL
Match: A0A0A0L6P2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236570 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.7e-67
Identity = 123/136 (90.44%), Postives = 130/136 (95.59%), Query Frame = 1


Query: 3   GIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFAT 62
           GIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYG+V+GLPF+T
Sbjct: 230 GIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGVVLGLPFST 289

Query: 63  SVLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHD 122
            VL+QKQ KYR SHGIEYWWTYMRADSEGL+EIRRLCEAEKLKIPVEKTFPITQV EAHD
Sbjct: 290 GVLLQKQLKYRFSHGIEYWWTYMRADSEGLEEIRRLCEAEKLKIPVEKTFPITQVREAHD 349

Query: 123 AKDKNLIPGKVIREVE 139
           AKDKNLIPGKV+ E +
Sbjct: 350 AKDKNLIPGKVVLEFD 365

[Close]

BLAST of Lsi05G001300 vs. TrEMBL
Match: B9GGE2_POPTR (Oxidoreductase family protein OS=Populus trichocarpa GN=POPTR_0001s38220g PE=4 SV=2)

HSP 1 Score: 225.7 bits (574), Expect = 3.8e-56
Identity = 106/135 (78.52%), Postives = 118/135 (87.41%), Query Frame = 1


Query: 4   IEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFATS 63
           IE  IKGKFDAVLDTIGVP+TERIGI  L RGGHYMTLQGEAASLTDRYGLV GLP AT+
Sbjct: 233 IELAIKGKFDAVLDTIGVPETERIGIKFLKRGGHYMTLQGEAASLTDRYGLVAGLPMATA 292

Query: 64  VLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHDA 123
           +L++KQ +YR SHGIEYWWTYMRADS+GLDEI RL EA K+KIPVEKTFPITQ  EAH+A
Sbjct: 293 ILLKKQIQYRYSHGIEYWWTYMRADSDGLDEIHRLSEAGKMKIPVEKTFPITQAREAHEA 352

Query: 124 KDKNLIPGKVIREVE 139
           KDK  IPGKV+ E++
Sbjct: 353 KDKKKIPGKVVLELD 367

[Close]

BLAST of Lsi05G001300 vs. TrEMBL
Match: B9RX93_RICCO (Zinc binding dehydrogenase, putative OS=Ricinus communis GN=RCOM_1742210 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.6e-56
Identity = 103/135 (76.30%), Postives = 120/135 (88.89%), Query Frame = 1


Query: 4   IEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFATS 63
           IE  IKGKFDAVLDTIGVP+TERIGI+ L RGG YMTLQGEAAS+TDRYG+ +GLP AT+
Sbjct: 231 IELAIKGKFDAVLDTIGVPETERIGINFLKRGGQYMTLQGEAASVTDRYGIAVGLPIATA 290

Query: 64  VLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHDA 123
           +L++KQ +YR SHGIEYWWTYMRADS+GLDEIRRL EA KLK+PVEKTFP TQV EAH+A
Sbjct: 291 ILLKKQIQYRYSHGIEYWWTYMRADSDGLDEIRRLSEAGKLKVPVEKTFPFTQVREAHEA 350

Query: 124 KDKNLIPGKVIREVE 139
           K+K LIPGKV+ E++
Sbjct: 351 KEKRLIPGKVVLELD 365

[Close]

BLAST of Lsi05G001300 vs. TrEMBL
Match: A0A068UCG2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021300001 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.7e-54
Identity = 104/140 (74.29%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 1   MNGIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPF 60
           M  +E  +KG FDAVLDTIG+P+TERIGI+LL RGGHYMTLQGEAASLTDRYGL IGLP 
Sbjct: 238 MEDLEVAMKGYFDAVLDTIGLPETERIGINLLKRGGHYMTLQGEAASLTDRYGLAIGLPL 297

Query: 61  ATSVLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEA 120
           AT +L++KQ +YR SHGIEYWWTYMRAD+EGL+EIRRL EA +LKIPVEKTF ITQV EA
Sbjct: 298 ATGILLKKQIQYRYSHGIEYWWTYMRADAEGLEEIRRLSEAGRLKIPVEKTFSITQVREA 357

Query: 121 HDAKD-KNLIPGKVIREVEK 140
           H AKD K  +PGK++ E+EK
Sbjct: 358 HQAKDRKGHVPGKIVLELEK 377

[Close]

BLAST of Lsi05G001300 vs. TrEMBL
Match: A0A067KJI5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09822 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.1e-54
Identity = 102/135 (75.56%), Postives = 118/135 (87.41%), Query Frame = 1


Query: 4   IEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFATS 63
           +E  IKGKFDAVLDTIG P+TERIG++ L RGG+YMTLQGEAASL DRYGL +GLP AT+
Sbjct: 235 VELAIKGKFDAVLDTIGAPETERIGVNFLKRGGYYMTLQGEAASLADRYGLAVGLPIATA 294

Query: 64  VLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHDA 123
           +L++KQ +YR SHGIEY WTYMRADS+GLDEIRRL EA KLKIPVEKTFP TQV EAH+A
Sbjct: 295 LLLKKQIQYRYSHGIEYSWTYMRADSDGLDEIRRLFEAGKLKIPVEKTFPFTQVREAHEA 354

Query: 124 KDKNLIPGKVIREVE 139
           KDK LIPGKV+ E++
Sbjct: 355 KDKKLIPGKVVLELD 369

[Close]

BLAST of Lsi05G001300 vs. TAIR10
Match: AT3G15090.1 (AT3G15090.1 GroES-like zinc-binding alcohol dehydrogenase family protein)

HSP 1 Score: 204.9 bits (520), Expect = 3.6e-53
Identity = 96/133 (72.18%), Postives = 113/133 (84.96%), Query Frame = 1


Query: 4   IEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFATS 63
           IE  +KGKFDAVLDTIG P+TERIGI+ L +GG+YMTLQGEAASLTD+YG V+GLP ATS
Sbjct: 233 IELAVKGKFDAVLDTIGGPETERIGINFLRKGGNYMTLQGEAASLTDKYGFVVGLPLATS 292

Query: 64  VLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHDA 123
           +LM+K+ +Y+ SHGI+YWWTYMRAD EGL EI+RL  A KLKIPVEKTFPIT V  AH+A
Sbjct: 293 LLMKKKIQYQYSHGIDYWWTYMRADPEGLAEIQRLVGAGKLKIPVEKTFPITDVVAAHEA 352

Query: 124 KDKNLIPGKVIRE 137
           K+K  IPGKV+ E
Sbjct: 353 KEKKQIPGKVVLE 365

[Close]

BLAST of Lsi05G001300 vs. NCBI nr
Match: gi|778680365|ref|XP_011651297.1| (PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 5.3e-67
Identity = 123/136 (90.44%), Postives = 130/136 (95.59%), Query Frame = 1


Query: 3   GIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFAT 62
           GIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYG+V+GLPF+T
Sbjct: 230 GIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGVVLGLPFST 289

Query: 63  SVLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHD 122
            VL+QKQ KYR SHGIEYWWTYMRADSEGL+EIRRLCEAEKLKIPVEKTFPITQV EAHD
Sbjct: 290 GVLLQKQLKYRFSHGIEYWWTYMRADSEGLEEIRRLCEAEKLKIPVEKTFPITQVREAHD 349

Query: 123 AKDKNLIPGKVIREVE 139
           AKDKNLIPGKV+ E +
Sbjct: 350 AKDKNLIPGKVVLEFD 365

[Close]

BLAST of Lsi05G001300 vs. NCBI nr
Match: gi|659111995|ref|XP_008456012.1| (PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Cucumis melo])

HSP 1 Score: 258.8 bits (660), Expect = 5.9e-66
Identity = 122/136 (89.71%), Postives = 129/136 (94.85%), Query Frame = 1


Query: 3   GIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFAT 62
           GIEFKIKGKFDAVLDTIGVPDTERIGI+LLNRGGHYMTLQGEAASLTDRYGLV+GLPF+T
Sbjct: 230 GIEFKIKGKFDAVLDTIGVPDTERIGIYLLNRGGHYMTLQGEAASLTDRYGLVLGLPFST 289

Query: 63  SVLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHD 122
            VL+QKQ KYR SH IEYWWTYMRADSEGL+EIRRLCEAEKLKIPVEKTFPITQV EAHD
Sbjct: 290 GVLLQKQLKYRFSHAIEYWWTYMRADSEGLEEIRRLCEAEKLKIPVEKTFPITQVREAHD 349

Query: 123 AKDKNLIPGKVIREVE 139
           AKDKNLIPGKV+ E +
Sbjct: 350 AKDKNLIPGKVVLEFD 365

[Close]

BLAST of Lsi05G001300 vs. NCBI nr
Match: gi|1009161907|ref|XP_015899148.1| (PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-57
Identity = 107/135 (79.26%), Postives = 121/135 (89.63%), Query Frame = 1


Query: 4   IEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFATS 63
           IE  IKGKFDAVLDTIGVP+TER+GI+ LNRGGHYMTLQGEAASL DRYGL +GLP AT+
Sbjct: 237 IELAIKGKFDAVLDTIGVPETERVGINFLNRGGHYMTLQGEAASLADRYGLGVGLPIATA 296

Query: 64  VLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHDA 123
           +L++KQF+YR SHGIEYWWTYMRADSEGLDE+RRL EA KLKIPVEKTFPI QV EAH+A
Sbjct: 297 ILLKKQFQYRYSHGIEYWWTYMRADSEGLDEVRRLSEAGKLKIPVEKTFPIAQVREAHEA 356

Query: 124 KDKNLIPGKVIREVE 139
           KDK  IPGKV+ E++
Sbjct: 357 KDKKQIPGKVVLELD 371

[Close]

BLAST of Lsi05G001300 vs. NCBI nr
Match: gi|720075080|ref|XP_010279216.1| (PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Nelumbo nucifera])

HSP 1 Score: 226.9 bits (577), Expect = 2.5e-56
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 1


Query: 4   IEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFATS 63
           +E  IKGKFDAVLDTIGVP+TERIGI+LL +GG+YMTLQGEAASL DRYGL IGLP AT+
Sbjct: 214 VELAIKGKFDAVLDTIGVPETERIGINLLRKGGYYMTLQGEAASLADRYGLAIGLPAATT 273

Query: 64  VLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHDA 123
           +L++KQF+YR SHGIEYWWTYMRAD EGLDEIRRL E+ KLKIPVEKTFPITQV EAH  
Sbjct: 274 ILLKKQFQYRYSHGIEYWWTYMRADPEGLDEIRRLSESGKLKIPVEKTFPITQVREAHKV 333

Query: 124 KDKNLIPGKVIREVE 139
           KDK LIPGKV+ E++
Sbjct: 334 KDKRLIPGKVVLEID 348

[Close]

BLAST of Lsi05G001300 vs. NCBI nr
Match: gi|566153434|ref|XP_002300404.2| (oxidoreductase family protein [Populus trichocarpa])

HSP 1 Score: 225.7 bits (574), Expect = 5.5e-56
Identity = 106/135 (78.52%), Postives = 118/135 (87.41%), Query Frame = 1


Query: 4   IEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFATS 63
           IE  IKGKFDAVLDTIGVP+TERIGI  L RGGHYMTLQGEAASLTDRYGLV GLP AT+
Sbjct: 233 IELAIKGKFDAVLDTIGVPETERIGIKFLKRGGHYMTLQGEAASLTDRYGLVAGLPMATA 292

Query: 64  VLMQKQFKYRLSHGIEYWWTYMRADSEGLDEIRRLCEAEKLKIPVEKTFPITQVGEAHDA 123
           +L++KQ +YR SHGIEYWWTYMRADS+GLDEI RL EA K+KIPVEKTFPITQ  EAH+A
Sbjct: 293 ILLKKQIQYRYSHGIEYWWTYMRADSDGLDEIHRLSEAGKMKIPVEKTFPITQAREAHEA 352

Query: 124 KDKNLIPGKVIREVE 139
           KDK  IPGKV+ E++
Sbjct: 353 KDKKKIPGKVVLELD 367

The following BLAST results are available for this feature:

BLAST of Lsi05G001300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT4I1_MOUSE	6.6e-09	31.25	Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1...	[more]
RT4I1_BOVIN	6.6e-09	30.37	Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 S...	[more]
RT4I1_HUMAN	3.6e-07	29.69	Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1...	[more]

BLAST of Lsi05G001300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6P2_CUCSA	3.7e-67	90.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236570 PE=4 SV=1	[more]
B9GGE2_POPTR	3.8e-56	78.52	Oxidoreductase family protein OS=Populus trichocarpa GN=POPTR_0001s38220g PE=4 S...	[more]
B9RX93_RICCO	8.6e-56	76.30	Zinc binding dehydrogenase, putative OS=Ricinus communis GN=RCOM_1742210 PE=4 SV...	[more]
A0A068UCG2_COFCA	4.7e-54	74.29	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021300001 PE=4 SV=1	[more]
A0A067KJI5_JATCU	6.1e-54	75.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09822 PE=4 SV=1	[more]

BLAST of Lsi05G001300 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15090.1	3.6e-53	72.18	GroES-like zinc-binding alcohol dehydrogenase family protein	[more]

BLAST of Lsi05G001300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680365\|ref\|XP_011651297.1\|	5.3e-67	90.44	PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Cucumis sativus]	[more]
gi\|659111995\|ref\|XP_008456012.1\|	5.9e-66	89.71	PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Cucumis melo]	[more]
gi\|1009161907\|ref\|XP_015899148.1\|	1.7e-57	79.26	PREDICTED: reticulon-4-interacting protein 1, mitochondrial [Ziziphus jujuba]	[more]
gi\|720075080\|ref\|XP_010279216.1\|	2.5e-56	78.52	PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Nelumbo ...	[more]
gi\|566153434\|ref\|XP_002300404.2\|	5.5e-56	78.52	oxidoreductase family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016040	NAD(P)-bd_dom
IPR002085	Alcohol dehydrogenase superfamily, zinc-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003960	NADPH:quinone reductase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001300.1	Lsi05G001300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002085	Alcohol dehydrogenase superfamily, zinc-type	PANTHER	PTHR11695	ALCOHOL DEHYDROGENASE RELATED	coord: 11..146 score: 1.8
IPR016040	NAD(P)-binding domain	GENE3D	G3DSA:3.40.50.720		coord: 10..112 score: 1.
None	No IPR available	PANTHER	PTHR11695:SF509	RETICULON-4-INTERACTING PROTEIN 1 HOMOLOG, MITOCHONDRIAL	coord: 11..146 score: 1.8
None	No IPR available	PFAM	PF13602	ADH_zinc_N_2	coord: 9..134 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001300	Csa3G236570	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001300	CSPI03G19530	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001300	Cucsa.032430	Cucumber (Gy14) v1	cgylsiB003
Lsi05G001300	CmaCh16G004100	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001300	CmoCh16G004420	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001300	Cla004284	Watermelon (97103) v1	lsiwmB361
Lsi05G001300	MELO3C019391	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001300	ClCG05G009200	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001300	MELO3C019391.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001300	Cla97C05G091520	Watermelon (97103) v2	lsiwmbB329
Lsi05G001300	Bhi01G001146	Wax gourd	lsiwgoB431
Lsi05G001300	Cp4.1LG14g03680	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001300	CsGy3G019460	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001300	Carg11341	Silver-seed gourd	carlsiB595
Lsi05G001300	CsaV3_3G019590	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001300	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001300	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001300	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001300	Silver-seed gourd	carlsiB039