Lsi05G001290 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Sequence-specific DNA-binding transcription factor
Location	chr05 : 1940272 .. 1941990 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTTCCTCCAGTCCTTTTCTCCCTCCCTACCTTTGAGTTTGTATTGACGTATTTCCTACCTTTGAGTTTGTATTGACGTATTTAGGGTTAAGCAACAACTTATCTGACCAATATTTTGGTGATTCCCTAAAATGGTCCAAGATCTATATTTGATTGTAATTCCAAAGTTTGTCTCCTGATTTTTTTGTTGAGTACAACAAAAGTAGTGGTGAGAATGTGATTCTTTGGATCTCAAAGGAAGGAATAGCTGCATTTATCGTTGATGTTCATGATTTTTTATAAAGAAATTTGATGTTTTGATTTGTTCGCTTGAATCTGGCTCCTTATATTACCTAATAATTGTTGTTTGTCAGGAAGCCTAATAGTAGTTGTTTCTCAGGAAGTACTAGTTAGATTTTCTGGTTTTGGATCCGAGGAGGATGAGTGGGTTAATATCCGAAGAAACATTAGACCTCGTTCTCTACCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGTAAAATCCTTTTTTACACTTCTCCAGACTTCCAATACTTAACGGGAGGCCTTTCCATCACCTTCTTGCAATGAATTCAGGATAATCTCTTTTACTAGGTTTATCTATATTGGACATAATCTCCGACTACCTTGTAAAACCACTCCCCTAGGTGGAGTACACAATGATCTTTTAACATTCTCACTAAAAAACTCAACACTCACTCTACCCTATAGGGAAACCTTTTTTTATGAGAAATTTCATTATCTTCAAAATTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCACGTGCTTGATACACAGCGAAGAAGACATGATGTACGGGGTTGTCGCTGCAGGTTTTTGGTTCGTTATGATCACGATCAATCTGAGGTGTATATCTTCTTCAGGTTCTTTTGGTTGTTTCTATTCAATATTGCTCTCCTAGCTCCAACATCAGCTTGGGGGTGGTTGCAATGAACACAAACATCACATCAATATAACAATTATTTTGTGGTTCACTAGAAACGAAGCTCTTTTTCTGTGTAATCTTGTTTGTGTTAATTCCACATGGGCTGAAGAAGCTTTCGATCTGGGTAAAATTGGAAATTAAGAGCCTGGTTAGTGGTTGCTGATGTCAGTTCTCTTTTCTTTTTTCTTTCTTTCTTCTTCTTCTTCTAAAAAGAGTTTATTTTGGTAAAAAGCAAGTACTGTGTTATTTAATCAGGCATTGACTGCTGTTCCGGATTATTGATTTCTCTTGCTTTAAATTATTGGTAGGAAATTGTTCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTACCGGTTGCAACAGCTTCACGCGGTAAATGAAGCAGCATCCATTGAGCCCTCAAAGTCTAGCATGGATTCTGTATTGCTTAGTGGCCAGAGGATAAATTTCGAGACAACACAAAAGCCGCTTAGCAAGGATGGAGCCTTGGTTATACCAAATGCAAATGCCAATATGAATGTCCAAGCCCAAACTAGTACTCAGGAAGCAAGCAATACTGAAACTAACAGTGCTCCAACCACATTCCACTCTGGTAATCACAGTGCTCCAAATACATTCAACACTGGTAATCCAGCAGGTAGCTCTGCCTTCTCGAGTGGTATCATGATGAACACTGTTTCTAGTGGGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGTTGA

mRNA sequence

ATGTTTCTTCCTCCAGTCCTTTTCTCCCTCCCTACCTTTGAGTTTGTATTGACGTATTTCCTACCTTTGAGAAGCCTAATAGTAGTTGTTTCTCAGGAAGTACTAGTTAGATTTTCTGGTTTTGGATCCGAGGAGGATGAGTGGGTTAATATCCGAAGAAACATTAGACCTCGTTCTCTACCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCACGTGCTTGATACACAGCGAAGAAGACATGATGTACGGGGTTGTCGCTGCAGGTTTTTGGTTCGTTATGATCACGATCAATCTGAGGAAATTGTTCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTACCGGTTGCAACAGCTTCACGCGGTAAATGAAGCAGCATCCATTGAGCCCTCAAAGTCTAGCATGGATTCTGTATTGCTTAGTGGCCAGAGGATAAATTTCGAGACAACACAAAAGCCGCTTAGCAAGGATGGAGCCTTGGTTATACCAAATGCAAATGCCAATATGAATGTCCAAGCCCAAACTAGTACTCAGGAAGCAAGCAATACTGAAACTAACAGTGCTCCAACCACATTCCACTCTGGTAATCACAGTGCTCCAAATACATTCAACACTGGTAATCCAGCAGGTAGCTCTGCCTTCTCGAGTGGTATCATGATGAACACTGTTTCTAGTGGGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGTTGA

Coding sequence (CDS)

ATGTTTCTTCCTCCAGTCCTTTTCTCCCTCCCTACCTTTGAGTTTGTATTGACGTATTTCCTACCTTTGAGAAGCCTAATAGTAGTTGTTTCTCAGGAAGTACTAGTTAGATTTTCTGGTTTTGGATCCGAGGAGGATGAGTGGGTTAATATCCGAAGAAACATTAGACCTCGTTCTCTACCTTGTGAATCATCAGAATGTGTGGCAGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCACGTGCTTGATACACAGCGAAGAAGACATGATGTACGGGGTTGTCGCTGCAGGTTTTTGGTTCGTTATGATCACGATCAATCTGAGGAAATTGTTCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTACCGGTTGCAACAGCTTCACGCGGTAAATGAAGCAGCATCCATTGAGCCCTCAAAGTCTAGCATGGATTCTGTATTGCTTAGTGGCCAGAGGATAAATTTCGAGACAACACAAAAGCCGCTTAGCAAGGATGGAGCCTTGGTTATACCAAATGCAAATGCCAATATGAATGTCCAAGCCCAAACTAGTACTCAGGAAGCAAGCAATACTGAAACTAACAGTGCTCCAACCACATTCCACTCTGGTAATCACAGTGCTCCAAATACATTCAACACTGGTAATCCAGCAGGTAGCTCTGCCTTCTCGAGTGGTATCATGATGAACACTGTTTCTAGTGGGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGTTGA

Protein sequence

MFLPPVLFSLPTFEFVLTYFLPLRSLIVVVSQEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEPSKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPTTFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS

Homology

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BLAST of Lsi05G001290 vs. Swiss-Prot
Match: SHH2_ARATH (Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana GN=SHH2 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.4e-50
Identity = 113/194 (58.25%), Postives = 138/194 (71.13%), Query Frame = 1


Query: 20  FLPLRSLIVVVSQEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 79
           FL  R+L  +   EV VRF+GF  EEDEW+N+++++R RSLPCE+SECVAVL GDL+LCF
Sbjct: 161 FLAHRNL-EIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCF 220

Query: 80  QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQ 139
           QEGK+QALYFDA VLD QRRRHDVRGCRCRFLVRY HDQSEEIV LRKICRRPETDYRLQ
Sbjct: 221 QEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEEIVPLRKICRRPETDYRLQ 280

Query: 140 QLH-AVNEAA-SIEPSKSSMDSVLLSGQRINFETTQKPLSKDGA---LVIPNA-NANMNV 199
           QLH AVN+ A S +    ++D+             + PLS  GA   +V P + + +++ 
Sbjct: 281 QLHNAVNDLANSNQHQIPALDA-----------AAKTPLSLPGATVPIVAPESKDPSLSA 340

Query: 200 QAQTSTQEASNTET 208
              T  Q +SN  T
Sbjct: 341 TPATLVQPSSNAAT 342

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BLAST of Lsi05G001290 vs. Swiss-Prot
Match: SHH1_ARATH (Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidopsis thaliana GN=SHH1 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EV VRFSGF +  DEWVN++ ++R RS+P E SEC  V  GDL+LCFQE ++QALY D H
Sbjct: 157 EVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGH 216

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPE 134
           VL+ +R  HD   C C FLVRY+ D +EE + L +ICRRPE
Sbjct: 217 VLNIKRGIHDHARCNCVFLVRYELDNTEESLGLERICRRPE 257

[Close]

BLAST of Lsi05G001290 vs. TrEMBL
Match: A0A0A0LC67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236580 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.9e-103
Identity = 200/228 (87.72%), Postives = 207/228 (90.79%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 149 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 208

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 209 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 268

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET+Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+APT
Sbjct: 269 SKSGMDSVLLSGQRINFETSQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPT 328

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
                      TFN+ N AGSSAFSSGI+ NTVS+GSADNVSDGKLLS
Sbjct: 329 -----------TFNSANLAGSSAFSSGIVTNTVSAGSADNVSDGKLLS 365

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BLAST of Lsi05G001290 vs. TrEMBL
Match: M5WG16_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007389mg PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 4.6e-62
Identity = 137/224 (61.16%), Postives = 159/224 (70.98%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRF+GFG EEDEWVN+R+++R RSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 160 EVLVRFAGFGPEEDEWVNVRKHVRQRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 219

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLD QRRRHDVRGCRCRFLVRY HDQSEEIV LRK+CRRPETDYRLQQLHAVNEAAS E 
Sbjct: 220 VLDAQRRRHDVRGCRCRFLVRYVHDQSEEIVPLRKVCRRPETDYRLQQLHAVNEAASAE- 279

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
            + SMD  +  G   + E  QK  + D A   P  +AN ++  Q++T E   +E +   T
Sbjct: 280 -QKSMDHFM--GSVTSAEMMQKQQNTDAASAPPVLHANASLATQSTTPEFKGSEVS---T 339

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDG 257
              SG        N+  P GS+  +SG     V  GS +N+  G
Sbjct: 340 VISSG--------NSNFPPGSAVITSGTATVVVPGGSVENMPKG 368

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BLAST of Lsi05G001290 vs. TrEMBL
Match: W9RI10_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012170 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.8e-61
Identity = 138/214 (64.49%), Postives = 154/214 (71.96%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRF GFG E+DEWVNIR+++R RSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 155 EVLVRFVGFGPEDDEWVNIRKHVRQRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 214

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLD QRRRHDVRGCRCRFLVRYDHDQSEEIV LRK+CRRPETDYRLQQL+AVNEAAS E 
Sbjct: 215 VLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLYAVNEAASAEQ 274

Query: 153 SKSSMDSVLLSG--QRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTE-TNS 212
            KSS D+    G   RI+ ETT K    D ALV P  +A   +  + S  E    E  N 
Sbjct: 275 QKSSTDNFGGGGFRARISAETTPKLQHADAALVAPALHATAALATKASILEPKKVEIVNV 334

Query: 213 APTTFHSGNHSAP-NTFNTGNPAGSSAFSSGIMM 243
                +S N +A  N   +G+PA +    SG  M
Sbjct: 335 VVDAGNSNNVTASGNGIMSGSPASNKPIVSGEKM 368

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BLAST of Lsi05G001290 vs. TrEMBL
Match: A0A061FF91_THECC (DNA binding protein, putative OS=Theobroma cacao GN=TCM_046875 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.5e-60
Identity = 129/227 (56.83%), Postives = 159/227 (70.04%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EV VRF+GFG EEDEWVNIR+++R RSLPCE+SECVAVLPGDLILCFQEGK+QALYFDAH
Sbjct: 169 EVQVRFAGFGPEEDEWVNIRKHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFDAH 228

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLD QRRRHDVRGCRCRFLVRYDHDQSEEIV LRK+CRRPETDYRLQQLHA N++AS + 
Sbjct: 229 VLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHASNDSASTDQ 288

Query: 153 SKSSMDSVLLSGQRI---NFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNS 212
            K+S D    +  ++   + ET  K  + D       A+AN++V AQT+  E+ N  T +
Sbjct: 289 QKTSTDPSTANAPKVISSSTETMLKQQNPDAFRTALVAHANVSVAAQTTNPESKNAGTMT 348

Query: 213 APTTFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDG 257
                   N + P   N G     + F++ I + T + G   N+ +G
Sbjct: 349 T-------NITNPVASNPGISPSGAVFTTSIAVGTATGGFGQNMQEG 388

[Close]

BLAST of Lsi05G001290 vs. TrEMBL
Match: A0A151RAJ6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_039304 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 7.4e-60
Identity = 125/193 (64.77%), Postives = 145/193 (75.13%), Query Frame = 1


Query: 30  VSQEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYF 89
           V QEVLVRF+GFG EEDEW+NIR+++RPRSLPCESSECV V+PGDLILCFQEGKEQALYF
Sbjct: 5   VFQEVLVRFAGFGPEEDEWINIRKHVRPRSLPCESSECVVVIPGDLILCFQEGKEQALYF 64

Query: 90  DAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAAS 149
           DAHVLD QRRRHDVRGCRCRFLVRYDHDQSEEIV LRKICRRPETDYRLQQLHA+NEAA 
Sbjct: 65  DAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLQQLHALNEAAH 124

Query: 150 IEPSKSSMD-SVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQA-QTSTQEASNTET 209
           ++  K+ MD +  ++  R+  ET  K L          AN +M     QT+  E+ + + 
Sbjct: 125 VDQQKTGMDPTANVNAMRVTTETVPKQLIA--------ANIHMETPVLQTNVPESMDVDP 184

Query: 210 NSAP--TTFHSGN 219
             A   T   +GN
Sbjct: 185 KKAEAITDVQAGN 189

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BLAST of Lsi05G001290 vs. TAIR10
Match: AT3G18380.2 (AT3G18380.2 sequence-specific DNA binding transcription factors;sequence-specific DNA binding)

HSP 1 Score: 195.3 bits (495), Expect = 4.7e-50
Identity = 113/195 (57.95%), Postives = 138/195 (70.77%), Query Frame = 1


Query: 20  FLPLRSLIVVVSQEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCF 79
           FL  R+L  +   EV VRF+GF  EEDEW+N+++++R RSLPCE+SECVAVL GDL+LCF
Sbjct: 161 FLAHRNL-EIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCF 220

Query: 80  QEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSE-EIVQLRKICRRPETDYRL 139
           QEGK+QALYFDA VLD QRRRHDVRGCRCRFLVRY HDQSE EIV LRKICRRPETDYRL
Sbjct: 221 QEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRL 280

Query: 140 QQLH-AVNEAA-SIEPSKSSMDSVLLSGQRINFETTQKPLSKDGA---LVIPNA-NANMN 199
           QQLH AVN+ A S +    ++D+             + PLS  GA   +V P + + +++
Sbjct: 281 QQLHNAVNDLANSNQHQIPALDA-----------AAKTPLSLPGATVPIVAPESKDPSLS 340

Query: 200 VQAQTSTQEASNTET 208
               T  Q +SN  T
Sbjct: 341 ATPATLVQPSSNAAT 343

[Close]

BLAST of Lsi05G001290 vs. TAIR10
Match: AT1G15215.2 (AT1G15215.2 BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1))

HSP 1 Score: 124.8 bits (312), Expect = 7.8e-29
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EV VRFSGF +  DEWVN++ ++R RS+P E SEC  V  GDL+LCFQE ++QALY D H
Sbjct: 157 EVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGH 216

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPE 134
           VL+ +R  HD   C C FLVRY+ D +EE + L +ICRRPE
Sbjct: 217 VLNIKRGIHDHARCNCVFLVRYELDNTEESLGLERICRRPE 257

[Close]

BLAST of Lsi05G001290 vs. NCBI nr
Match: gi|659111991|ref|XP_008456010.1| (PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Cucumis melo])

HSP 1 Score: 403.7 bits (1036), Expect = 2.5e-109
Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 155 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 214

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 215 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 274

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+AP 
Sbjct: 275 SKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPI 334

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF SGNH+AP TFN+ N AGSSAFSSGI+ NTVS GSADNVSDGKLLS
Sbjct: 335 TFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLLS 382

[Close]

BLAST of Lsi05G001290 vs. NCBI nr
Match: gi|659111993|ref|XP_008456011.1| (PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Cucumis melo])

HSP 1 Score: 403.7 bits (1036), Expect = 2.5e-109
Identity = 207/228 (90.79%), Postives = 213/228 (93.42%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 134 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 193

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 194 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 253

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+AP 
Sbjct: 254 SKSGMDSVLLSGQRINFETPQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPI 313

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
           TF SGNH+AP TFN+ N AGSSAFSSGI+ NTVS GSADNVSDGKLLS
Sbjct: 314 TFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLLS 361

[Close]

BLAST of Lsi05G001290 vs. NCBI nr
Match: gi|778680371|ref|XP_011651299.1| (PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 2.7e-103
Identity = 200/228 (87.72%), Postives = 207/228 (90.79%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 134 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 193

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 194 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 253

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET+Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+APT
Sbjct: 254 SKSGMDSVLLSGQRINFETSQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPT 313

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
                      TFN+ N AGSSAFSSGI+ NTVS+GSADNVSDGKLLS
Sbjct: 314 -----------TFNSANLAGSSAFSSGIVTNTVSAGSADNVSDGKLLS 350

[Close]

BLAST of Lsi05G001290 vs. NCBI nr
Match: gi|778680368|ref|XP_011651298.1| (PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 2.7e-103
Identity = 200/228 (87.72%), Postives = 207/228 (90.79%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 155 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 214

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 215 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 274

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET+Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+APT
Sbjct: 275 SKSGMDSVLLSGQRINFETSQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPT 334

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
                      TFN+ N AGSSAFSSGI+ NTVS+GSADNVSDGKLLS
Sbjct: 335 -----------TFNSANLAGSSAFSSGIVTNTVSAGSADNVSDGKLLS 371

[Close]

BLAST of Lsi05G001290 vs. NCBI nr
Match: gi|700202508|gb|KGN57641.1| (hypothetical protein Csa_3G236580 [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 2.7e-103
Identity = 200/228 (87.72%), Postives = 207/228 (90.79%), Query Frame = 1


Query: 33  EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 92
           EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH
Sbjct: 149 EVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAH 208

Query: 93  VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 152
           VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP
Sbjct: 209 VLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEP 268

Query: 153 SKSSMDSVLLSGQRINFETTQKPLSKDGALVIPNANANMNVQAQTSTQEASNTETNSAPT 212
           SKS MDSVLLSGQRINFET+Q PLSKD ALVIPNAN ++N  AQTSTQEA NTETN+APT
Sbjct: 269 SKSGMDSVLLSGQRINFETSQNPLSKDAALVIPNANPHINAHAQTSTQEARNTETNTAPT 328

Query: 213 TFHSGNHSAPNTFNTGNPAGSSAFSSGIMMNTVSSGSADNVSDGKLLS 261
                      TFN+ N AGSSAFSSGI+ NTVS+GSADNVSDGKLLS
Sbjct: 329 -----------TFNSANLAGSSAFSSGIVTNTVSAGSADNVSDGKLLS 365

The following BLAST results are available for this feature:

BLAST of Lsi05G001290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SHH2_ARATH	3.4e-50	58.25	Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana GN=SHH2 PE=2 SV=1	[more]
SHH1_ARATH	1.4e-27	57.43	Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidopsis thaliana GN=SHH1 PE=1 SV=1	[more]

BLAST of Lsi05G001290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC67_CUCSA	1.9e-103	87.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236580 PE=4 SV=1	[more]
M5WG16_PRUPE	4.6e-62	61.16	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007389mg PE=4 SV=1	[more]
W9RI10_9ROSA	1.8e-61	64.49	Uncharacterized protein OS=Morus notabilis GN=L484_012170 PE=4 SV=1	[more]
A0A061FF91_THECC	1.5e-60	56.83	DNA binding protein, putative OS=Theobroma cacao GN=TCM_046875 PE=4 SV=1	[more]
A0A151RAJ6_CAJCA	7.4e-60	64.77	Uncharacterized protein OS=Cajanus cajan GN=KK1_039304 PE=4 SV=1	[more]

BLAST of Lsi05G001290 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18380.2	4.7e-50	57.95	sequence-specific DNA binding transcription factors;sequence-specifi...	[more]
AT1G15215.2	7.8e-29	57.43	BEST Arabidopsis thaliana protein match is: sequence-specific DNA bi...	[more]

BLAST of Lsi05G001290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111991\|ref\|XP_008456010.1\|	2.5e-109	90.79	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Cucumis melo]	[more]
gi\|659111993\|ref\|XP_008456011.1\|	2.5e-109	90.79	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Cucumis melo]	[more]
gi\|778680371\|ref\|XP_011651299.1\|	2.7e-103	87.72	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 [Cucumis sativus]	[more]
gi\|778680368\|ref\|XP_011651298.1\|	2.7e-103	87.72	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 [Cucumis sativus]	[more]
gi\|700202508\|gb\|KGN57641.1\|	2.7e-103	87.72	hypothetical protein Csa_3G236580 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003682	chromatin binding

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003682	chromatin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001290.1	Lsi05G001290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33827	FAMILY NOT NAMED	coord: 33..224 score: 3.1
None	No IPR available	PANTHER	PTHR33827:SF3	PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2	coord: 33..224 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001290	Cucumber (Gy14) v1	cgylsiB003
Lsi05G001290	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001290	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001290	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001290	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001290	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001290	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001290	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001290	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001290	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001290	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001290	Watermelon (97103) v1	lsiwmB361
Lsi05G001290	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001290	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001290	Silver-seed gourd	carlsiB039
Lsi05G001290	Silver-seed gourd	carlsiB595
Lsi05G001290	Cucumber (Chinese Long) v3	cuclsiB230
Lsi05G001290	Watermelon (97103) v2	lsiwmbB329
Lsi05G001290	Wax gourd	lsiwgoB431