Lsi05G000900 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G000900
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRing finger protein, putative
Locationchr05 : 1613709 .. 1616323 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTACTTCATTCAATAGTTTTATTTGACTTTTTAGCTTAGTTAATGCCATTTGTTAATGAGTGTGGAAACAACTTTCCATTTTTTAAACATAATATATAAATCCACAAGCAATGTTATGCAATGACCTACCTTTTAAAGAAATGCTTCTTCATCTCTGTTTCCTCTGTTTCCTCTGTTTCTTCAACCTTGCAACCACCTCTGAACTCTGTTTTGACTCCATCTGCAATGGCGATTTTCAAACCATTCGATTCCCTTTCAGAATTGAAAACAAACAGCCCAAATCATGTGGGTATCCAGGCTTTGATTTGACTTGCCATTCCACAGCTCAACCACTTCTCCATCTTCCTTTTTCAGGGGATTTCAGTGTAAAGTACATAGATTATCAGAACCAAGAAATTTGGGTCAATGATCCAAACAACTGCCTTCCCCAAAAGATTCTGTCTCTTACGCTTTTTGGGTCGCCATTTGATGCCAAAAACAGTGAAGATTTCACCTTCTTTAATTGTTCGTGGAGTGATCAAATCCCATATGAATTCAACCTGAGTCCAATTTCTTGCCTTAGCGGATTGTCGTATGCAGTTTTTGCTTCATCTTCTTTATTTGTGAATGAGATTTTGTTATCGAGCTGTGTTAGGATGAAGACTGTATCGGTGCCGAATTCAGGGTCGTTTCCATGGGATTTGACGAATGATCTTCGATTAGTCTGGAAAAAACCTAATTGTAAGAAGTGCGAGTCAAATGGTGGAGTTTGTGGGCTCAAACCAAATTCAACCAATGAAATTCAATGCAAATACAATACTCCAACTCAACGTGGTACGTTTCCCTTTTTTTCTTCATATTGCGATTTTTCCTTTATAAATAGCTTCTCTCGTAAAAATGTTATTTTAGTTTTTATACTTTAAATTTTATTTAACTATAGTCTCTCTATCAATTTTAATCTCCGTACTTTCAATAAATCTTAAATTTTGTCTCCTAATATTGATCTTTTAAAAAACTTTTTGTTATCTACAATATTTTTACTATAAATTTTAAAAATATTTTCACATATCTTATTTTGTTGCATGAAAATTATTATTATTATTATTTAATCAATTTTGGTAAAAATTAATTTTGAGAAACTAATTTAAGATATATTGAAAGTGTGGGGATTAAAATTGGATAATTGAAAGTATAGAGATTAAAATTGGATAAACTTCAAAATATGAGGATCAAAATGGTAATTTAACCAAATTTTAATGTTGGACTCTAACATTTTAAAAATGATGGCTGAAATTTTTGTTAATTTGTAATCTAATATTGTAGAAGGGGAAAAAGGCTAAATTTTCTTACCTATTATCTACAAATTTTTTCTTTTTAAGAACACATTCAATCTTCAAATTAAAGTCAATTTTAGCTGTTATAATAGTTAGGGTTAAGACTAAATTGTGATTTGACTATTGTATTGGATAAAATTAACTATCTTAGGTAGAGTCGTCAAAATGAGCATTGACATGCGAATGTGTTAGTGGTTAAGAGTTATTTCGTTTAAATTCTCCTACCACTATTATACTAAAAAATGGGTAGGTATAATCTCGTTTTCAATTATTTTCTAATGAGTATAAAACATTTTTTTTTTTTTTATAAAAGAAATAGTTATGGGTGGTTGTTGATCCACCAAACATTAAGATAGACATAGACTTTTAGTGAAGCAAAACGACATGGATTTGTTCAACTTTTACCAATAAATACATACATATATATCTATTTACATATACACATACATATATATACACACACATAAGTTTTGACAAAAAGAAAAAAAAAAAAAGAAGAAACTTTTTAAACAAAATATATATATTTTTCTATACGATATAGCTTATTAAGTCATTTTAGATTAAAAAATTTAAAGTGTTTGATAATACATTTATATTTTTTATTATGATTCTCCGTCTTCCATTTTTCATATCGTAAGAGTATTTAGAACTACATATTATAATATTCATTTTATTTTAATTGAAAATTTATGTCTAAACCAATAATAGTTTTATCTTTTTGAGAGGCTAAATTATATGAATTATATAACAAAAAAAAATATTTAAAATGATTATTAGGGATGGCAAGGGGTGCTCGCTATGCTATATCTATAGGAGTTGGAGTACCAGCAAGCATGTGTGTTTTGGGCTTCTTATGTTGCTTTTGTGCTCGAGTCAGATCTTCCACAAGAGGCCGCAATTCTAGCATTGAGGCCCATTGGGTAATCTCTTCTCGGCCCACTTTAATGGGCCTAGATGGGCCTACTATCGATTCTTATCCAAAAATTGTATTGGGCGAAAGCCTGCGTCTACCAAAGCCCAATGACAATATATGCCCAATTTGTCTGTCAGAATATCGGCCCAAAGAGACTGTGAAGAGTATTCCACAATGTCAACATTTCTTCCATCAAGATTGTATTGATGAATGGCTGCGATTGAATGCCTCTTGTCCTGTTTGTAGAATGCCTCCTCCCATTAAATCTCCACCGTCCGATTATTCCCTCTAGCACCACTTTCAATTTATTATCAAATTTGTAAATATGTATTCTTTATTTTATTTTATTTATTTTATTATTATTATTTTTTTTTGGCAATATGTGG

mRNA sequence

ATTTTACTTCATTCAATAGTTTTATTTGACTTTTTAGCTTAGTTAATGCCATTTGTTAATGAGTGTGGAAACAACTTTCCATTTTTTAAACATAATATATAAATCCACAAGCAATGTTATGCAATGACCTACCTTTTAAAGAAATGCTTCTTCATCTCTGTTTCCTCTGTTTCCTCTGTTTCTTCAACCTTGCAACCACCTCTGAACTCTGTTTTGACTCCATCTGCAATGGCGATTTTCAAACCATTCGATTCCCTTTCAGAATTGAAAACAAACAGCCCAAATCATGTGGGTATCCAGGCTTTGATTTGACTTGCCATTCCACAGCTCAACCACTTCTCCATCTTCCTTTTTCAGGGGATTTCAGTGTAAAGTACATAGATTATCAGAACCAAGAAATTTGGGTCAATGATCCAAACAACTGCCTTCCCCAAAAGATTCTGTCTCTTACGCTTTTTGGGTCGCCATTTGATGCCAAAAACAGTGAAGATTTCACCTTCTTTAATTGTTCGTGGAGTGATCAAATCCCATATGAATTCAACCTGAGTCCAATTTCTTGCCTTAGCGGATTGTCGTATGCAGTTTTTGCTTCATCTTCTTTATTTGTGAATGAGATTTTGTTATCGAGCTGTGTTAGGATGAAGACTGTATCGGTGCCGAATTCAGGGTCGTTTCCATGGGATTTGACGAATGATCTTCGATTAGTCTGGAAAAAACCTAATTGTAAGAAGTGCGAGTCAAATGGTGGAGTTTGTGGGCTCAAACCAAATTCAACCAATGAAATTCAATGCAAATACAATACTCCAACTCAACGTGGGATGGCAAGGGGTGCTCGCTATGCTATATCTATAGGAGTTGGAGTACCAGCAAGCATGTGTGTTTTGGGCTTCTTATGTTGCTTTTGTGCTCGAGTCAGATCTTCCACAAGAGGCCGCAATTCTAGCATTGAGGCCCATTGGGTAATCTCTTCTCGGCCCACTTTAATGGGCCTAGATGGGCCTACTATCGATTCTTATCCAAAAATTGTATTGGGCGAAAGCCTGCGTCTACCAAAGCCCAATGACAATATATGCCCAATTTGTCTGTCAGAATATCGGCCCAAAGAGACTGTGAAGAGTATTCCACAATGTCAACATTTCTTCCATCAAGATTGTATTGATGAATGGCTGCGATTGAATGCCTCTTGTCCTGTTTGTAGAATGCCTCCTCCCATTAAATCTCCACCGTCCGATTATTCCCTCTAGCACCACTTTCAATTTATTATCAAATTTGTAAATATGTATTCTTTATTTTATTTTATTTATTTTATTATTATTATTTTTTTTTGGCAATATGTGG

Coding sequence (CDS)

ATGTTATGCAATGACCTACCTTTTAAAGAAATGCTTCTTCATCTCTGTTTCCTCTGTTTCCTCTGTTTCTTCAACCTTGCAACCACCTCTGAACTCTGTTTTGACTCCATCTGCAATGGCGATTTTCAAACCATTCGATTCCCTTTCAGAATTGAAAACAAACAGCCCAAATCATGTGGGTATCCAGGCTTTGATTTGACTTGCCATTCCACAGCTCAACCACTTCTCCATCTTCCTTTTTCAGGGGATTTCAGTGTAAAGTACATAGATTATCAGAACCAAGAAATTTGGGTCAATGATCCAAACAACTGCCTTCCCCAAAAGATTCTGTCTCTTACGCTTTTTGGGTCGCCATTTGATGCCAAAAACAGTGAAGATTTCACCTTCTTTAATTGTTCGTGGAGTGATCAAATCCCATATGAATTCAACCTGAGTCCAATTTCTTGCCTTAGCGGATTGTCGTATGCAGTTTTTGCTTCATCTTCTTTATTTGTGAATGAGATTTTGTTATCGAGCTGTGTTAGGATGAAGACTGTATCGGTGCCGAATTCAGGGTCGTTTCCATGGGATTTGACGAATGATCTTCGATTAGTCTGGAAAAAACCTAATTGTAAGAAGTGCGAGTCAAATGGTGGAGTTTGTGGGCTCAAACCAAATTCAACCAATGAAATTCAATGCAAATACAATACTCCAACTCAACGTGGGATGGCAAGGGGTGCTCGCTATGCTATATCTATAGGAGTTGGAGTACCAGCAAGCATGTGTGTTTTGGGCTTCTTATGTTGCTTTTGTGCTCGAGTCAGATCTTCCACAAGAGGCCGCAATTCTAGCATTGAGGCCCATTGGGTAATCTCTTCTCGGCCCACTTTAATGGGCCTAGATGGGCCTACTATCGATTCTTATCCAAAAATTGTATTGGGCGAAAGCCTGCGTCTACCAAAGCCCAATGACAATATATGCCCAATTTGTCTGTCAGAATATCGGCCCAAAGAGACTGTGAAGAGTATTCCACAATGTCAACATTTCTTCCATCAAGATTGTATTGATGAATGGCTGCGATTGAATGCCTCTTGTCCTGTTTGTAGAATGCCTCCTCCCATTAAATCTCCACCGTCCGATTATTCCCTCTAG

Protein sequence

MLCNDLPFKEMLLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHSTAQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFNCSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVPNSGSFPWDLTNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAISIGVGVPASMCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPTLMGLDGPTIDSYPKIVLGESLRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPPPIKSPPSDYSL
Homology
[Close]
BLAST of Lsi05G000900 vs. Swiss-Prot
Match: AT21A_ARATH (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.1e-56
Identity = 139/379 (36.68%), Postives = 203/379 (53.56%), Query Frame = 1 

Query: 9   KEMLLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTC 68
           K++ L+L FL  L     A+  + C  S C  D   +RFPF + +KQP+ CG+ GF+L C
Sbjct: 5   KQLFLYLFFLFPLLH---ASHPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQC 64

Query: 69  HSTAQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFT 128
            ++ +  L LP SG F V+ IDY +Q+I + DP NCL +K+L+  +  SPF A     +T
Sbjct: 65  TASPKTALKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLLTFDISRSPFSALYLVSYT 124

Query: 129 FFNCSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVPNS---- 188
           F +C   +++        I CL   + +  A++SL + + +L SC  +KT+ VP S    
Sbjct: 125 FLSC--PNEVAKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLPSCQIVKTLDVPVSRRVI 184

Query: 189 ---GSFPWDLTN-DLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQC------KYNTPTQR 248
                F  D+ + DL L W  P+C  CE +   CG + N++ +++C       YNT  Q 
Sbjct: 185 AKKSRFSTDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNTSLQVKCFPFENSGYNTEPQ- 244

Query: 249 GMARGARYAISIGVGVPASMCVLGFLCCFCARVRSSTR-----GRNSSIEAHWVISSRPT 308
                    I + +  P ++    F  C    V +S R      RN +I A   +     
Sbjct: 245 -----VLKIILLSIIGPLTI----FATCIAVGVCTSERFASLIQRNVAIAA---LQPNEV 304

Query: 309 LM--GLDGPTIDSYPKIVLGESLRLPKPNDNI-CPICLSEYRPKETVKSIPQCQHFFHQD 366
           ++  GLD   I+SY K  LGES RLP  ND+I CPICLSEY  KETV+ IP+C H FH +
Sbjct: 305 IVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSE 364

[Close]
BLAST of Lsi05G000900 vs. Swiss-Prot
Match: ATL22_ARATH (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2 SV=2)

HSP 1 Score: 219.9 bits (559), Expect = 4.6e-56
Identity = 136/375 (36.27%), Postives = 196/375 (52.27%), Query Frame = 1 

Query: 11  MLLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHS 70
           +LL+L FL F    N A+  + C+   C+ +    RFPF + + QP+SCGY GF+L C  
Sbjct: 8   LLLNLIFLFFFPLLN-ASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKD 67

Query: 71  TAQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFF 130
            A   L LP S  F VK IDY+ Q I +NDP NCL +++L+    GSPF    S ++TF 
Sbjct: 68  DANTTLKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLLNFDPSGSPFSFLRSRNYTFL 127

Query: 131 NCSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEI-----LLSSCVRMKTVSVPNSG 190
            C     I   F    I CL         +SS FV +      + SSC   K + +P S 
Sbjct: 128 ICPKEANITASFR--AIDCLGN------TTSSFFVVQFENLGSMPSSCHIFKILPLPFSW 187

Query: 191 SFPWDL------TNDLRLVWKKPNCKKCE-SNGGVCGLKPNSTNEIQCKYNTPT---QRG 250
              +        + D+ L W  P+C+ CE      CG K N++++++C  +        G
Sbjct: 188 FVAYTTYPDGQNSRDMWLKWDSPDCRDCERRTNSRCGFKNNTSHQVECFSSVNPGLHNTG 247

Query: 251 MARGARYAISIGVGVPASMCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPT----LM 310
           +       +S+   + A    +G + C   RV S  + +         ++S+P+     +
Sbjct: 248 LQVLKIMCLSLVGPLTALTFCVGLVMCSSERVSSQIQ-QAVVARLSGSVTSQPSNEVARI 307

Query: 311 GLDGPTIDSYPKIVLGESLRLPK-PNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDE 366
           GLD  TI+SY K+ LGES RLP   ND +CPICLSEY  KETV+ +P+C+H FH +CID 
Sbjct: 308 GLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDA 367

[Close]
BLAST of Lsi05G000900 vs. Swiss-Prot
Match: AT21B_ARATH (Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.6e-54
Identity = 121/341 (35.48%), Postives = 177/341 (51.91%), Query Frame = 1 

Query: 45  IRFPFRIENKQPKSCGYPGFDLTCHSTAQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNC 104
           IRFPF         C +P F+L C +    +L LP SG F V+YIDY+ Q+I++NDP NC
Sbjct: 46  IRFPF---------CDHPLFNLLCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENC 105

Query: 105 LPQKILSLTLFGSPFDAKNSEDFTFFNC-------SWSDQIPYEFNLSPISCLSGLSYAV 164
           L +++L+  + GSPF  +    +TF  C       SW   IP         CLS  + + 
Sbjct: 106 LAKRLLTFNISGSPFSPRFDTLYTFLTCPNELVLPSWYPSIP---------CLSNSTSSF 165

Query: 165 FASSSLFVNEILLSSCVRMKTVSVPNSGSFPWD-----LTNDLRLVWKKPNCKKCESNGG 224
           FA+S+  + E +L SC  +K + VP    F        L   L L W  PNC+ CE +  
Sbjct: 166 FATSNFALAESMLPSCQIVKRIYVPADSPFAETRFSSYLNQSLLLEWNSPNCRGCEIDYL 225

Query: 225 VCGLKPNSTNEIQCKYNTPTQRGMARGARYAISIGVGVPASMCVLGFLCCFCARVRSSTR 284
            CG K  ++ E++C +       ++R     +++ + +     V+ F+ C   R+ ++ R
Sbjct: 226 RCGFKNKASPEVKC-FGAKKSGHLSRAV---VAVLICLSIIGAVILFVTCIAIRIHNTPR 285

Query: 285 GRNSSIEAHWVI-SSRPTLM----------GLDGPTIDSYPKIVLGESLRLPKPNDNICP 344
            R      HW + ++  T+M          GLD  TI+ Y  + LGES R P  N  +CP
Sbjct: 286 RR------HWAVPAAAATVMQQPREVMATRGLDQSTIEKYKTMELGESRRPPGTNGIVCP 345

Query: 345 ICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCR 363
           ICLSEY  KETV+ IP+C H FH  CID WL+++ SCP+CR
Sbjct: 346 ICLSEYVSKETVRFIPECDHCFHAKCIDVWLKIHGSCPLCR 358

[Close]
BLAST of Lsi05G000900 vs. Swiss-Prot
Match: ATL20_ARATH (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 6.2e-45
Identity = 111/305 (36.39%), Postives = 161/305 (52.79%), Query Frame = 1 

Query: 81  SGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFNCSWSDQIPY 140
           SG F V  I+YQ Q+I ++DP NC+ +++L+    GSPF    S  +TF  C     IP 
Sbjct: 2   SGTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGSPFSYGFSFYYTFLTCPNEVVIPV 61

Query: 141 EFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVP-------------NSGSF 200
            ++L  I CLS  + + FA+S+L  +++L  SC  +K + VP                + 
Sbjct: 62  -WSLMSIPCLSNSTSSFFATSNLTFSKLLPPSCQIVKGLYVPVDVIYKDVITEEKGFSTV 121

Query: 201 PWDLTNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQ-RGMARGARYAISI 260
           PW    ++ L W  PNC+ CE     CG K  ++ E++   + P + +   R     + I
Sbjct: 122 PW--LGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVKYLADPPDETKSRLRPLIITLCI 181

Query: 261 GVGVPASMCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPTLM---------GLDGPT 320
             G+ A+       C    R+ +S R  N   + +  I++R T           GLD  T
Sbjct: 182 IGGITAT-------CIAAIRIYNSERFVNQRRQ-NAAITARNTTQQPRGVVVTTGLDQST 241

Query: 321 IDSYPKIVLGESLRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNAS 363
           I+SY K+ LGES RLP  N  ICPICLSEY  KETV+ +P+C H FH  CIDEWL++++S
Sbjct: 242 IESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSS 295

[Close]
BLAST of Lsi05G000900 vs. Swiss-Prot
Match: AT21C_ARATH (Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana GN=ATL21C PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.1e-44
Identity = 128/371 (34.50%), Postives = 186/371 (50.13%), Query Frame = 1 

Query: 9   KEMLLHLCFLCFLCFFNLATTSELCFDSI-----CNGDFQTIRFPFRIENKQPKSCGYPG 68
           K++   + FL FL     A+    C  S      C      IRFPF         C +  
Sbjct: 5   KQLFPFVFFLLFLVSLRHASNPNNCSSSSSRPLRCGPLEVPIRFPF---------CNHAR 64

Query: 69  FDLTCHSTAQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKN 128
           F+L C    + +L LP SG F V+ IDY+ Q+I++NDPN CL +++L+  + GSPF    
Sbjct: 65  FNLHCTDLNKTVLELPMSGTFLVRDIDYRRQKIYINDPN-CLAKRLLTFNISGSPFSPHF 124

Query: 129 SEDFTFFNCSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVPN 188
              +TF +C     +P  +   P  CLS  + + FA+S+  + + +L SC  +K + VP 
Sbjct: 125 DILYTFLSCPNEVVLPSWYPSIP--CLSNSTSSFFATSNYSLAQSMLPSCQIVKRLHVPA 184

Query: 189 SGSF-----PWDLTND-LRLVWKKPNCK-KCESNGGVCGLKPNSTNEIQCKYN-TPTQRG 248
           +  F       DL N  L L W  P+C+ KC       G   NS N   C ++     R 
Sbjct: 185 TSPFGETRFSSDLNNQSLLLEWALPDCRAKCLGATKKTGTIYNS-NIFSCSFSFLYDSRE 244

Query: 249 MARGARYAISIGVGVPASMCVLGFLCCFCARVRSSTRGR-NSSIEAHWVISSRPTLM--- 308
           +      +  + V V +   V  F+   C  +R     R +S+I A  V+     +M   
Sbjct: 245 LFINGNLSSGVLVLVISLSAVTVFVFPTCIAIRLYDSERFDSAIAAATVMQQPREVMARR 304

Query: 309 GLDGPTIDSYPKIVLGESLRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEW 363
           GLD  TI+++ K+ LGES RL   N  +CPICLSEY  KETV+ IP+C H FH +CID W
Sbjct: 305 GLDQSTIETFKKMELGESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFHVECIDVW 362

[Close]
BLAST of Lsi05G000900 vs. TrEMBL
Match: A0A0A0LC42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603590 PE=4 SV=1)

HSP 1 Score: 652.9 bits (1683), Expect = 2.4e-184
Identity = 305/366 (83.33%), Postives = 327/366 (89.34%), Query Frame = 1 

Query: 12  LLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHST 71
           LL  CFLCFLCF NL TTSELC DS CNG FQTIRFPFRI+N+QPKSCGYP FDLTCH +
Sbjct: 6   LLVPCFLCFLCFLNLTTTSELCLDSTCNGSFQTIRFPFRIQNQQPKSCGYPAFDLTCHPS 65

Query: 72  AQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFN 131
            QPL+HLPFSG+F V+YIDY+NQEIWVNDPNNCLP+KILSL LFGSPFDAKN+ DFTFFN
Sbjct: 66  GQPLIHLPFSGEFIVQYIDYKNQEIWVNDPNNCLPRKILSLMLFGSPFDAKNTVDFTFFN 125

Query: 132 CSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVPNS-GSFPWD 191
           CS SD+IPY+FNL+PISCLSGLSYAVFASSS  VNEIL S C  +KTVSVP S  ++ WD
Sbjct: 126 CSGSDEIPYDFNLNPISCLSGLSYAVFASSSSMVNEILSSRCELVKTVSVPMSLETYSWD 185

Query: 192 LTNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAISIGVGV 251
           L NDLRL WKKPNCKKCE NGG+CG+KPNSTNEIQCKYNT TQ GMARGARYAISIGVGV
Sbjct: 186 LRNDLRLGWKKPNCKKCELNGGICGIKPNSTNEIQCKYNTSTQSGMARGARYAISIGVGV 245

Query: 252 PASMCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPTLMGLDGPTIDSYPKIVLGESL 311
           P +MCVLGFLCC CARVRSST GRNSSIEAHWVISSRP  MGLDGPTIDSYPKIVLGESL
Sbjct: 246 PVTMCVLGFLCCLCARVRSSTSGRNSSIEAHWVISSRPITMGLDGPTIDSYPKIVLGESL 305

Query: 312 RLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPPPIKSP 371
           RLPKP DNICPICLSEYRPKETVK+IPQCQHFFHQDCIDEWLRLN SCP+CRM PP+KSP
Sbjct: 306 RLPKPTDNICPICLSEYRPKETVKTIPQCQHFFHQDCIDEWLRLNPSCPLCRM-PPLKSP 365

Query: 372 PSDYSL 377
           PS + L
Sbjct: 366 PSHFPL 370

[Close]
BLAST of Lsi05G000900 vs. TrEMBL
Match: A0A0A0L8U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603600 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 5.8e-114
Identity = 214/366 (58.47%), Postives = 264/366 (72.13%), Query Frame = 1 

Query: 12  LLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHST 71
           ++ L  L F  F NLAT+SELCFDS C GD+QTIRFPFRI N QPKSCGYPGFDL+CH T
Sbjct: 1   MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT 60

Query: 72  AQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFN 131
            +PLLHLP SGDF V+ IDY +QEI +NDP+ CLP+KIL L L GSPF  KNS+   FFN
Sbjct: 61  GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN 120

Query: 132 CSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVPNSGSFPWDL 191
           CS S+ IPY +N  PI CLS  S+ V+ASSS  +  +  S+C  +KTVSVP+S S+  +L
Sbjct: 121 CS-SNYIPYWYN-DPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNL 180

Query: 192 TNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAISIGVGVP 251
              L L W+ P+C +CES G  C +K NS+NEIQC       +G +R     +SI +GV 
Sbjct: 181 WEYLLLKWENPDCGRCESVGQRCEVKSNSSNEIQC----TDSQGRSRVGANVVSIAMGVV 240

Query: 252 AS-MCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPT-LMGLDGPTIDSYPKIVLGES 311
           A+ +C LG LCC C ++    RG +SSI AHW +SS+ T  MGL+G TI+SYPK VL ES
Sbjct: 241 AAVICFLGVLCCLCFKINFRRRGSSSSI-AHWTVSSQRTRTMGLNGATIESYPKFVLDES 300

Query: 312 LRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPPPIKS 371
           L LPKPN+N+CPICL++Y+PKE VKSIP CQH FH+ CIDEWLRL ASCPVCR   PI++
Sbjct: 301 LSLPKPNNNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCR-KSPIEA 358

Query: 372 PPSDYS 376
           PPS+ S
Sbjct: 361 PPSNPS 358

[Close]
BLAST of Lsi05G000900 vs. TrEMBL
Match: A0A061G8Y3_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_015374 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 4.6e-111
Identity = 206/366 (56.28%), Postives = 252/366 (68.85%), Query Frame = 1 

Query: 12  LLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHST 71
           LL   F  F  + +  T+++ C  + C      IRFPFRIE +Q KSCGYPGF L+C S+
Sbjct: 10  LLFFIFFFFCSYLHTTTSTDTCIRAACRSTKPEIRFPFRIEGRQSKSCGYPGFHLSCDSS 69

Query: 72  AQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFN 131
            Q +L LP+SG FSV+ IDY  QEIW+NDPNNCLPQ+IL L L GSPF+  N + FTFFN
Sbjct: 70  NQTILELPYSGKFSVQGIDYAAQEIWINDPNNCLPQRILWLNLSGSPFNGVNYQKFTFFN 129

Query: 132 CSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVP-----NSGS 191
           CS  D + Y FN  PI+CLSG +Y VFA+SS  V   L SSC R+ TV+VP     +   
Sbjct: 130 CS-LDYLKYGFN--PIACLSGGNYTVFATSSTKVVSSLSSSCQRVTTVAVPVEWASHDQI 189

Query: 192 FPWDLTNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAISI 251
              DL+N+LRL W KP C+KCES GG C LK NST +  C  N P  RG+ R  RYAI++
Sbjct: 190 LKSDLSNNLRLTWDKPKCRKCESRGGECRLKANSTRQTICS-NAP-GRGITRSVRYAITV 249

Query: 252 GVGVPASMCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPTLM-GLDGPTIDSYPKIV 311
           G GVP  +C+LG LC  C +V+S T  RNS  E +  ++ +PT+  GLDGPTI+SYPKIV
Sbjct: 250 GAGVPTLLCILGLLCFVCGKVQSCTVRRNSIPELNATVAPQPTIEDGLDGPTIESYPKIV 309

Query: 312 LGESLRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPP 371
           +GES RLPKP+DN CPICL EY PKET++SIPQCQH FH DCIDEWLRLNA+CP+CR  P
Sbjct: 310 IGESRRLPKPDDNTCPICLCEYWPKETLRSIPQCQHCFHADCIDEWLRLNATCPICRNSP 369

[Close]
BLAST of Lsi05G000900 vs. TrEMBL
Match: B9RII9_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_1579650 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 3.6e-100
Identity = 190/361 (52.63%), Postives = 243/361 (67.31%), Query Frame = 1 

Query: 23  FFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHS-TAQPLLHLPFS 82
           F  +  +  LC +S C  +   IRFPFRIEN+Q KSCGYPGFD++C + T   LL LP+S
Sbjct: 16  FLQIIASQHLCLNSACARNEPVIRFPFRIENRQFKSCGYPGFDVSCDTNTNHTLLELPYS 75

Query: 83  GDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFNCSWSDQIPYE 142
           G F+V+ IDY  QE+W+NDPNNCLP++ILSL L  SPF     ++FTFFNCS ++     
Sbjct: 76  GTFTVQAIDYATQELWINDPNNCLPKRILSLNLSNSPFVGLFYQNFTFFNCSLTNYT--N 135

Query: 143 FNLSPISCLSGLSYAVFASSSLFVNEIL--LSSCVRMKTVSVPNSGSF-----PWDLTND 202
           F L+PI+CLS  +  VFA+SSL V   L  LSSC    ++ VP    F       DL++D
Sbjct: 136 FQLNPIACLSSSTNTVFATSSLRVINHLSGLSSCEAFASMEVPVEWPFYGQILSSDLSDD 195

Query: 203 LRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAISIGVGVPASM 262
           LRL W  P C KCES+GG CG + NS+  I C    P  RG+ + ARY I+IG G+P ++
Sbjct: 196 LRLTWAVPRCGKCESHGGRCGPRSNSSRLIVCA--NPKLRGIPKSARYIITIGGGIPVAL 255

Query: 263 CVLGFLCCFCARVRSSTRGRNSSI--EAHWVISSRPTLM--GLDGPTIDSYPKIVLGESL 322
           CVLG LC  C R    T  R S +  E+++V++ +PT+   GLDG T++SYPKIVLGES 
Sbjct: 256 CVLGLLCFICNRASYYTGRRRSHLFPESNFVVNQQPTVSARGLDGQTLESYPKIVLGESR 315

Query: 323 RLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPPPIKSP 372
           RLPKP+D  C ICLSEY+PKET+K+IP+CQH FH DCIDEWL+LNASCP+CR  P    P
Sbjct: 316 RLPKPDDITCSICLSEYKPKETLKTIPECQHCFHADCIDEWLKLNASCPICRKSPDRLPP 372

[Close]
BLAST of Lsi05G000900 vs. TrEMBL
Match: W9RDM2_9ROSA (Putative RING-H2 finger protein ATL21A OS=Morus notabilis GN=L484_006837 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 3.1e-99
Identity = 187/367 (50.95%), Postives = 243/367 (66.21%), Query Frame = 1 

Query: 10  EMLLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCH 69
           ++L+    L    + + ++  E C  S+C      IRFPFRI N+Q K CGYPGFD++C 
Sbjct: 6   KVLVFFFILLSSSYLSSSSQQEPCVKSVCAIREPEIRFPFRISNRQSKLCGYPGFDVSCG 65

Query: 70  STAQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTF 129
              Q LL+LP+SG F+V+ IDY +QE+W+NDPNNCL ++ILSL L GSPF    ++DF F
Sbjct: 66  KKNQTLLNLPYSGQFTVQGIDYASQEMWINDPNNCLAKRILSLNLSGSPFYGGYNQDFAF 125

Query: 130 FNCSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVPNSGS--- 189
           FNCS SD   Y  +L+ I CLSG ++ VFA++SL V E L   C  + T  VP       
Sbjct: 126 FNCS-SDFSSYG-SLNSIGCLSGPTFWVFATASLRVTEFLSPRCQLIGTFPVPVDWPNYE 185

Query: 190 --FPWDLTNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAI 249
                +L++ LRL W  P C +CES GG CG K NST E+ C  N P + G+ R ARYA+
Sbjct: 186 EVLSSELSDHLRLAWDVPACGRCESRGGRCGFKANSTKEVVCS-NVP-ETGIPRTARYAV 245

Query: 250 SIGVGVPASMCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPTL-MGLDGPTIDSYPK 309
           ++GVGVP  +C +G LC  C RV++         E +  ++ +PT+ MGLDGPT++SYPK
Sbjct: 246 AVGVGVPVILCFVGLLCFICGRVKTFALRNGPIAEFNSTVAPQPTIVMGLDGPTLESYPK 305

Query: 310 IVLGESLRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRM 369
           IVLGES RLPKP+D  CPICLSEYRPKE +K+IP+CQH FH DCIDEWLRLNASCP+CR 
Sbjct: 306 IVLGESRRLPKPDDKTCPICLSEYRPKEILKTIPECQHCFHSDCIDEWLRLNASCPICRK 365

Query: 370 PPPIKSP 371
            P   +P
Sbjct: 366 SPERATP 368

[Close]
BLAST of Lsi05G000900 vs. TAIR10
Match: AT5G53110.1 (AT5G53110.1 RING/U-box superfamily protein)

HSP 1 Score: 337.8 bits (865), Expect = 8.5e-93
Identity = 181/376 (48.14%), Postives = 239/376 (63.56%), Query Frame = 1 

Query: 15  LCFLCFLCFFNLATTSEL-CFDSICNGDFQTIRFPFRIENKQPKSCGYP-GFDLTCHSTA 74
           L FL  L      TTS + C +++C  D   IRFPFR++++Q  SCGY  GFDLTC   A
Sbjct: 11  LLFLSLLIPTTTTTTSTVTCTNAVCRRDGPIIRFPFRLKHQQSHSCGYDKGFDLTCDINA 70

Query: 75  --QPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFF 134
             +  + LPFSG+F+V+ IDY  QEIW+NDPNNCLPQ+IL L L  +PF       FTFF
Sbjct: 71  GNRTTITLPFSGNFTVEEIDYAAQEIWINDPNNCLPQRILQLNLNSTPFSGVYMRQFTFF 130

Query: 135 NCSWSDQIPYEFNLSPISCLSGLSYAVFASSS-LFVNEILLSSCVRMKTVSVPNSGSF-- 194
           NC  S+ + +   L+PI+CLSG +  VFA+ S   +N +   SC  MKTV VP    F  
Sbjct: 131 NCPTSEYLRFR-PLNPITCLSGKNSTVFATPSPRVINYLSSQSCRLMKTVYVPVRWPFYE 190

Query: 195 ----PWDLTNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYA 254
                 DL+++L L W+ P C +CE  GG CG+K NS+ EI C +    +  + R ARYA
Sbjct: 191 QIVSSSDLSDNLWLTWRVPRCSRCEIKGGKCGIKSNSSREIICSH--VHKPAIPRRARYA 250

Query: 255 ISIGVGVPASMCVLGFLCCFCARVRSSTRGRN-------SSIEAHWVISSRPTLMGLDGP 314
           I++G G+P ++ V G  C   +++ S  + R        ++ +AH++ SS   +MGLDGP
Sbjct: 251 IAVGAGIPGALIVFGLFCFVYSKISSCIKRRRLVPTPEINNAQAHYLHSS-VIVMGLDGP 310

Query: 315 TIDSYPKIVLGESLRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNA 373
           TI+SYPKIVLGES RLPK +D  C ICLSEY PKET+++IPQCQH FH DCIDEWL+LN 
Sbjct: 311 TIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHADCIDEWLKLNG 370

[Close]
BLAST of Lsi05G000900 vs. TAIR10
Match: AT2G46495.1 (AT2G46495.1 RING/U-box superfamily protein)

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-57
Identity = 139/379 (36.68%), Postives = 203/379 (53.56%), Query Frame = 1 

Query: 9   KEMLLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTC 68
           K++ L+L FL  L     A+  + C  S C  D   +RFPF + +KQP+ CG+ GF+L C
Sbjct: 5   KQLFLYLFFLFPLLH---ASHPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQC 64

Query: 69  HSTAQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFT 128
            ++ +  L LP SG F V+ IDY +Q+I + DP NCL +K+L+  +  SPF A     +T
Sbjct: 65  TASPKTALKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLLTFDISRSPFSALYLVSYT 124

Query: 129 FFNCSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVPNS---- 188
           F +C   +++        I CL   + +  A++SL + + +L SC  +KT+ VP S    
Sbjct: 125 FLSC--PNEVAKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLPSCQIVKTLDVPVSRRVI 184

Query: 189 ---GSFPWDLTN-DLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQC------KYNTPTQR 248
                F  D+ + DL L W  P+C  CE +   CG + N++ +++C       YNT  Q 
Sbjct: 185 AKKSRFSTDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNTSLQVKCFPFENSGYNTEPQ- 244

Query: 249 GMARGARYAISIGVGVPASMCVLGFLCCFCARVRSSTR-----GRNSSIEAHWVISSRPT 308
                    I + +  P ++    F  C    V +S R      RN +I A   +     
Sbjct: 245 -----VLKIILLSIIGPLTI----FATCIAVGVCTSERFASLIQRNVAIAA---LQPNEV 304

Query: 309 LM--GLDGPTIDSYPKIVLGESLRLPKPNDNI-CPICLSEYRPKETVKSIPQCQHFFHQD 366
           ++  GLD   I+SY K  LGES RLP  ND+I CPICLSEY  KETV+ IP+C H FH +
Sbjct: 305 IVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSE 364

[Close]
BLAST of Lsi05G000900 vs. TAIR10
Match: AT2G25410.1 (AT2G25410.1 RING/U-box superfamily protein)

HSP 1 Score: 219.9 bits (559), Expect = 2.6e-57
Identity = 136/375 (36.27%), Postives = 196/375 (52.27%), Query Frame = 1 

Query: 11  MLLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHS 70
           +LL+L FL F    N A+  + C+   C+ +    RFPF + + QP+SCGY GF+L C  
Sbjct: 8   LLLNLIFLFFFPLLN-ASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKD 67

Query: 71  TAQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFF 130
            A   L LP S  F VK IDY+ Q I +NDP NCL +++L+    GSPF    S ++TF 
Sbjct: 68  DANTTLKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLLNFDPSGSPFSFLRSRNYTFL 127

Query: 131 NCSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEI-----LLSSCVRMKTVSVPNSG 190
            C     I   F    I CL         +SS FV +      + SSC   K + +P S 
Sbjct: 128 ICPKEANITASFR--AIDCLGN------TTSSFFVVQFENLGSMPSSCHIFKILPLPFSW 187

Query: 191 SFPWDL------TNDLRLVWKKPNCKKCE-SNGGVCGLKPNSTNEIQCKYNTPT---QRG 250
              +        + D+ L W  P+C+ CE      CG K N++++++C  +        G
Sbjct: 188 FVAYTTYPDGQNSRDMWLKWDSPDCRDCERRTNSRCGFKNNTSHQVECFSSVNPGLHNTG 247

Query: 251 MARGARYAISIGVGVPASMCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPT----LM 310
           +       +S+   + A    +G + C   RV S  + +         ++S+P+     +
Sbjct: 248 LQVLKIMCLSLVGPLTALTFCVGLVMCSSERVSSQIQ-QAVVARLSGSVTSQPSNEVARI 307

Query: 311 GLDGPTIDSYPKIVLGESLRLPK-PNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDE 366
           GLD  TI+SY K+ LGES RLP   ND +CPICLSEY  KETV+ +P+C+H FH +CID 
Sbjct: 308 GLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDA 367

[Close]
BLAST of Lsi05G000900 vs. TAIR10
Match: AT2G46494.1 (AT2G46494.1 RING/U-box superfamily protein)

HSP 1 Score: 212.2 bits (539), Expect = 5.4e-55
Identity = 121/341 (35.48%), Postives = 177/341 (51.91%), Query Frame = 1 

Query: 45  IRFPFRIENKQPKSCGYPGFDLTCHSTAQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNC 104
           IRFPF         C +P F+L C +    +L LP SG F V+YIDY+ Q+I++NDP NC
Sbjct: 46  IRFPF---------CDHPLFNLLCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENC 105

Query: 105 LPQKILSLTLFGSPFDAKNSEDFTFFNC-------SWSDQIPYEFNLSPISCLSGLSYAV 164
           L +++L+  + GSPF  +    +TF  C       SW   IP         CLS  + + 
Sbjct: 106 LAKRLLTFNISGSPFSPRFDTLYTFLTCPNELVLPSWYPSIP---------CLSNSTSSF 165

Query: 165 FASSSLFVNEILLSSCVRMKTVSVPNSGSFPWD-----LTNDLRLVWKKPNCKKCESNGG 224
           FA+S+  + E +L SC  +K + VP    F        L   L L W  PNC+ CE +  
Sbjct: 166 FATSNFALAESMLPSCQIVKRIYVPADSPFAETRFSSYLNQSLLLEWNSPNCRGCEIDYL 225

Query: 225 VCGLKPNSTNEIQCKYNTPTQRGMARGARYAISIGVGVPASMCVLGFLCCFCARVRSSTR 284
            CG K  ++ E++C +       ++R     +++ + +     V+ F+ C   R+ ++ R
Sbjct: 226 RCGFKNKASPEVKC-FGAKKSGHLSRAV---VAVLICLSIIGAVILFVTCIAIRIHNTPR 285

Query: 285 GRNSSIEAHWVI-SSRPTLM----------GLDGPTIDSYPKIVLGESLRLPKPNDNICP 344
            R      HW + ++  T+M          GLD  TI+ Y  + LGES R P  N  +CP
Sbjct: 286 RR------HWAVPAAAATVMQQPREVMATRGLDQSTIEKYKTMELGESRRPPGTNGIVCP 345

Query: 345 ICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCR 363
           ICLSEY  KETV+ IP+C H FH  CID WL+++ SCP+CR
Sbjct: 346 ICLSEYVSKETVRFIPECDHCFHAKCIDVWLKIHGSCPLCR 358

[Close]
BLAST of Lsi05G000900 vs. TAIR10
Match: AT1G28040.1 (AT1G28040.1 RING/U-box superfamily protein)

HSP 1 Score: 183.0 bits (463), Expect = 3.5e-46
Identity = 111/305 (36.39%), Postives = 161/305 (52.79%), Query Frame = 1 

Query: 81  SGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFNCSWSDQIPY 140
           SG F V  I+YQ Q+I ++DP NC+ +++L+    GSPF    S  +TF  C     IP 
Sbjct: 2   SGTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGSPFSYGFSFYYTFLTCPNEVVIPV 61

Query: 141 EFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVP-------------NSGSF 200
            ++L  I CLS  + + FA+S+L  +++L  SC  +K + VP                + 
Sbjct: 62  -WSLMSIPCLSNSTSSFFATSNLTFSKLLPPSCQIVKGLYVPVDVIYKDVITEEKGFSTV 121

Query: 201 PWDLTNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQ-RGMARGARYAISI 260
           PW    ++ L W  PNC+ CE     CG K  ++ E++   + P + +   R     + I
Sbjct: 122 PW--LGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVKYLADPPDETKSRLRPLIITLCI 181

Query: 261 GVGVPASMCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPTLM---------GLDGPT 320
             G+ A+       C    R+ +S R  N   + +  I++R T           GLD  T
Sbjct: 182 IGGITAT-------CIAAIRIYNSERFVNQRRQ-NAAITARNTTQQPRGVVVTTGLDQST 241

Query: 321 IDSYPKIVLGESLRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNAS 363
           I+SY K+ LGES RLP  N  ICPICLSEY  KETV+ +P+C H FH  CIDEWL++++S
Sbjct: 242 IESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSS 295

[Close]
BLAST of Lsi05G000900 vs. NCBI nr
Match: gi|659082012|ref|XP_008441618.1| (PREDICTED: RING-H2 finger protein ATL20-like [Cucumis melo])

HSP 1 Score: 659.8 bits (1701), Expect = 2.8e-186
Identity = 313/369 (84.82%), Postives = 334/369 (90.51%), Query Frame = 1 

Query: 12  LLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHST 71
           LL  CFLCFLCFFNL TTSELCFDS CNG+FQTIRFPFRI+NKQPKSCGYPGFDLTCH T
Sbjct: 7   LLFPCFLCFLCFFNLTTTSELCFDSTCNGNFQTIRFPFRIQNKQPKSCGYPGFDLTCHPT 66

Query: 72  AQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFN 131
            QPL+HLP SG+F V+YIDYQNQEIWVNDPNNCLP+KILSL LFGSPFDAKN+ DFTFFN
Sbjct: 67  GQPLIHLPLSGEFIVQYIDYQNQEIWVNDPNNCLPRKILSLMLFGSPFDAKNTVDFTFFN 126

Query: 132 CSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVP-NSGSFPW- 191
           CS SD+IPY+FNL+PISCLSGLSYAVFASSS  VN IL S C  +KTVSVP +S S+ W 
Sbjct: 127 CSGSDEIPYDFNLNPISCLSGLSYAVFASSSSMVNGILSSRCELVKTVSVPMSSESYSWD 186

Query: 192 -DLTNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAISIGV 251
            DL NDLRLVWKKPNCKKCE NGGVCG+KPNSTNEIQCKYNT T  GM RGARYAISIGV
Sbjct: 187 LDLRNDLRLVWKKPNCKKCELNGGVCGIKPNSTNEIQCKYNTSTPSGMPRGARYAISIGV 246

Query: 252 GVPASMCVLGFLCCFCARVR-SSTRGRNSSIEAHWVISSRPTLMGLDGPTIDSYPKIVLG 311
           GVPA+MCVLGFLCCFCARVR SSTRGRNSSIEAHWVISSRP  MGLDGPTIDSYPKIVLG
Sbjct: 247 GVPATMCVLGFLCCFCARVRSSSTRGRNSSIEAHWVISSRPITMGLDGPTIDSYPKIVLG 306

Query: 312 ESLRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPPPI 371
           ESLRLPKP+DNICPICLSEYRPKETVK+IPQC+HFFHQDCIDEWLRLN SCP+CRM PP+
Sbjct: 307 ESLRLPKPSDNICPICLSEYRPKETVKTIPQCRHFFHQDCIDEWLRLNPSCPLCRM-PPL 366

Query: 372 KSPPSDYSL 377
           KSPPSD+ L
Sbjct: 367 KSPPSDFPL 374

[Close]
BLAST of Lsi05G000900 vs. NCBI nr
Match: gi|778681878|ref|XP_011651602.1| (PREDICTED: RING-H2 finger protein ATL20-like [Cucumis sativus])

HSP 1 Score: 652.9 bits (1683), Expect = 3.4e-184
Identity = 305/366 (83.33%), Postives = 327/366 (89.34%), Query Frame = 1 

Query: 12  LLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHST 71
           LL  CFLCFLCF NL TTSELC DS CNG FQTIRFPFRI+N+QPKSCGYP FDLTCH +
Sbjct: 6   LLVPCFLCFLCFLNLTTTSELCLDSTCNGSFQTIRFPFRIQNQQPKSCGYPAFDLTCHPS 65

Query: 72  AQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFN 131
            QPL+HLPFSG+F V+YIDY+NQEIWVNDPNNCLP+KILSL LFGSPFDAKN+ DFTFFN
Sbjct: 66  GQPLIHLPFSGEFIVQYIDYKNQEIWVNDPNNCLPRKILSLMLFGSPFDAKNTVDFTFFN 125

Query: 132 CSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVPNS-GSFPWD 191
           CS SD+IPY+FNL+PISCLSGLSYAVFASSS  VNEIL S C  +KTVSVP S  ++ WD
Sbjct: 126 CSGSDEIPYDFNLNPISCLSGLSYAVFASSSSMVNEILSSRCELVKTVSVPMSLETYSWD 185

Query: 192 LTNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAISIGVGV 251
           L NDLRL WKKPNCKKCE NGG+CG+KPNSTNEIQCKYNT TQ GMARGARYAISIGVGV
Sbjct: 186 LRNDLRLGWKKPNCKKCELNGGICGIKPNSTNEIQCKYNTSTQSGMARGARYAISIGVGV 245

Query: 252 PASMCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPTLMGLDGPTIDSYPKIVLGESL 311
           P +MCVLGFLCC CARVRSST GRNSSIEAHWVISSRP  MGLDGPTIDSYPKIVLGESL
Sbjct: 246 PVTMCVLGFLCCLCARVRSSTSGRNSSIEAHWVISSRPITMGLDGPTIDSYPKIVLGESL 305

Query: 312 RLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPPPIKSP 371
           RLPKP DNICPICLSEYRPKETVK+IPQCQHFFHQDCIDEWLRLN SCP+CRM PP+KSP
Sbjct: 306 RLPKPTDNICPICLSEYRPKETVKTIPQCQHFFHQDCIDEWLRLNPSCPLCRM-PPLKSP 365

Query: 372 PSDYSL 377
           PS + L
Sbjct: 366 PSHFPL 370

[Close]
BLAST of Lsi05G000900 vs. NCBI nr
Match: gi|659082008|ref|XP_008441616.1| (PREDICTED: putative RING-H2 finger protein ATL21A isoform X1 [Cucumis melo])

HSP 1 Score: 427.6 bits (1098), Expect = 2.3e-116
Identity = 214/360 (59.44%), Postives = 261/360 (72.50%), Query Frame = 1 

Query: 15  LCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHSTAQP 74
           +  L F  FFNLATTSELCFDS C GD+QTIRFPFRI N QPKSCGYPGFDL+CH T + 
Sbjct: 2   ILLLLFFSFFNLATTSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGET 61

Query: 75  LLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFNCSW 134
           LLHLP SGDF V+ IDY +QEI +NDP+NCLP+KILSL L GSPF  KNS+ F F+NCS 
Sbjct: 62  LLHLPPSGDFIVQTIDYMHQEIRINDPDNCLPKKILSLNLSGSPFVKKNSQSFAFYNCS- 121

Query: 135 SDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVPNSGSFPWDLTND 194
           S  +PY + + PI CLS LSY V+ASSS  +  +  S+CV +KTVSVP+S S+   L +D
Sbjct: 122 SSYMPYWY-IDPIYCLSSLSYTVYASSSPLLINMFESNCVMIKTVSVPSSSSYSSKLWDD 181

Query: 195 LRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAISIGVGVPAS- 254
           L L W+ P+C +CES G  C LK NS+N IQC       +G +R     +SI +GV A+ 
Sbjct: 182 LLLKWENPDCGRCESIGQRCELKSNSSNGIQC----TNSQGRSRVGANVVSIAMGVVAAV 241

Query: 255 MCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPTLMGLDGPTIDSYPKIVLGESLRLP 314
           +C LG LCC C ++       NSS  AHW++SS+    GL+G TIDSYPK VL ESL LP
Sbjct: 242 ICFLGLLCCLCFKINFRRTRSNSSNIAHWIVSSQ----GLNGLTIDSYPKFVLDESLSLP 301

Query: 315 KPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPPPIKSPPSD 374
           KPN+N+CPICL++YRPKE VKSIP CQH FH+ CIDEWLRL ASCPVCR   P+++PPS+
Sbjct: 302 KPNNNVCPICLAQYRPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCR-KSPLEAPPSN 350

[Close]
BLAST of Lsi05G000900 vs. NCBI nr
Match: gi|778688699|ref|XP_004151260.2| (PREDICTED: putative RING-H2 finger protein ATL21B [Cucumis sativus])

HSP 1 Score: 419.1 bits (1076), Expect = 8.3e-114
Identity = 214/366 (58.47%), Postives = 264/366 (72.13%), Query Frame = 1 

Query: 12  LLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHST 71
           ++ L  L F  F NLAT+SELCFDS C GD+QTIRFPFRI N QPKSCGYPGFDL+CH T
Sbjct: 1   MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT 60

Query: 72  AQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFN 131
            +PLLHLP SGDF V+ IDY +QEI +NDP+ CLP+KIL L L GSPF  KNS+   FFN
Sbjct: 61  GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN 120

Query: 132 CSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVPNSGSFPWDL 191
           CS S+ IPY +N  PI CLS  S+ V+ASSS  +  +  S+C  +KTVSVP+S S+  +L
Sbjct: 121 CS-SNYIPYWYN-DPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNL 180

Query: 192 TNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAISIGVGVP 251
              L L W+ P+C +CES G  C +K NS+NEIQC       +G +R     +SI +GV 
Sbjct: 181 WEYLLLKWENPDCGRCESVGQRCEVKSNSSNEIQC----TDSQGRSRVGANVVSIAMGVV 240

Query: 252 AS-MCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPT-LMGLDGPTIDSYPKIVLGES 311
           A+ +C LG LCC C ++    RG +SSI AHW +SS+ T  MGL+G TI+SYPK VL ES
Sbjct: 241 AAVICFLGVLCCLCFKINFRRRGSSSSI-AHWTVSSQRTRTMGLNGATIESYPKFVLDES 300

Query: 312 LRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPPPIKS 371
           L LPKPN+N+CPICL++Y+PKE VKSIP CQH FH+ CIDEWLRL ASCPVCR   PI++
Sbjct: 301 LSLPKPNNNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCR-KSPIEA 358

Query: 372 PPSDYS 376
           PPS+ S
Sbjct: 361 PPSNPS 358

[Close]
BLAST of Lsi05G000900 vs. NCBI nr
Match: gi|590673850|ref|XP_007039003.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 409.5 bits (1051), Expect = 6.5e-111
Identity = 206/366 (56.28%), Postives = 252/366 (68.85%), Query Frame = 1 

Query: 12  LLHLCFLCFLCFFNLATTSELCFDSICNGDFQTIRFPFRIENKQPKSCGYPGFDLTCHST 71
           LL   F  F  + +  T+++ C  + C      IRFPFRIE +Q KSCGYPGF L+C S+
Sbjct: 10  LLFFIFFFFCSYLHTTTSTDTCIRAACRSTKPEIRFPFRIEGRQSKSCGYPGFHLSCDSS 69

Query: 72  AQPLLHLPFSGDFSVKYIDYQNQEIWVNDPNNCLPQKILSLTLFGSPFDAKNSEDFTFFN 131
            Q +L LP+SG FSV+ IDY  QEIW+NDPNNCLPQ+IL L L GSPF+  N + FTFFN
Sbjct: 70  NQTILELPYSGKFSVQGIDYAAQEIWINDPNNCLPQRILWLNLSGSPFNGVNYQKFTFFN 129

Query: 132 CSWSDQIPYEFNLSPISCLSGLSYAVFASSSLFVNEILLSSCVRMKTVSVP-----NSGS 191
           CS  D + Y FN  PI+CLSG +Y VFA+SS  V   L SSC R+ TV+VP     +   
Sbjct: 130 CS-LDYLKYGFN--PIACLSGGNYTVFATSSTKVVSSLSSSCQRVTTVAVPVEWASHDQI 189

Query: 192 FPWDLTNDLRLVWKKPNCKKCESNGGVCGLKPNSTNEIQCKYNTPTQRGMARGARYAISI 251
              DL+N+LRL W KP C+KCES GG C LK NST +  C  N P  RG+ R  RYAI++
Sbjct: 190 LKSDLSNNLRLTWDKPKCRKCESRGGECRLKANSTRQTICS-NAP-GRGITRSVRYAITV 249

Query: 252 GVGVPASMCVLGFLCCFCARVRSSTRGRNSSIEAHWVISSRPTLM-GLDGPTIDSYPKIV 311
           G GVP  +C+LG LC  C +V+S T  RNS  E +  ++ +PT+  GLDGPTI+SYPKIV
Sbjct: 250 GAGVPTLLCILGLLCFVCGKVQSCTVRRNSIPELNATVAPQPTIEDGLDGPTIESYPKIV 309

Query: 312 LGESLRLPKPNDNICPICLSEYRPKETVKSIPQCQHFFHQDCIDEWLRLNASCPVCRMPP 371
           +GES RLPKP+DN CPICL EY PKET++SIPQCQH FH DCIDEWLRLNA+CP+CR  P
Sbjct: 310 IGESRRLPKPDDNTCPICLCEYWPKETLRSIPQCQHCFHADCIDEWLRLNATCPICRNSP 369

The following BLAST results are available for this feature:
BLAST of Lsi05G000900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AT21A_ARATH2.1e-5636.68Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV... [more]
ATL22_ARATH4.6e-5636.27RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2 SV=2[more]
AT21B_ARATH9.6e-5435.48Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV... [more]
ATL20_ARATH6.2e-4536.39RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2 SV=2[more]
AT21C_ARATH3.1e-4434.50Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana GN=ATL21C PE=3 SV... [more]
BLAST of Lsi05G000900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LC42_CUCSA2.4e-18483.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603590 PE=4 SV=1[more]
A0A0A0L8U8_CUCSA5.8e-11458.47Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603600 PE=4 SV=1[more]
A0A061G8Y3_THECC4.6e-11156.28RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_015374 PE=4 S... [more]
B9RII9_RICCO3.6e-10052.63Ring finger protein, putative OS=Ricinus communis GN=RCOM_1579650 PE=4 SV=1[more]
W9RDM2_9ROSA3.1e-9950.95Putative RING-H2 finger protein ATL21A OS=Morus notabilis GN=L484_006837 PE=4 SV... [more]
BLAST of Lsi05G000900 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G53110.18.5e-9348.14 RING/U-box superfamily protein[more]
AT2G46495.11.2e-5736.68 RING/U-box superfamily protein[more]
AT2G25410.12.6e-5736.27 RING/U-box superfamily protein[more]
AT2G46494.15.4e-5535.48 RING/U-box superfamily protein[more]
AT1G28040.13.5e-4636.39 RING/U-box superfamily protein[more]
BLAST of Lsi05G000900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082012|ref|XP_008441618.1|2.8e-18684.82PREDICTED: RING-H2 finger protein ATL20-like [Cucumis melo][more]
gi|778681878|ref|XP_011651602.1|3.4e-18483.33PREDICTED: RING-H2 finger protein ATL20-like [Cucumis sativus][more]
gi|659082008|ref|XP_008441616.1|2.3e-11659.44PREDICTED: putative RING-H2 finger protein ATL21A isoform X1 [Cucumis melo][more]
gi|778688699|ref|XP_004151260.2|8.3e-11458.47PREDICTED: putative RING-H2 finger protein ATL21B [Cucumis sativus][more]
gi|590673850|ref|XP_007039003.1|6.5e-11156.28RING/U-box superfamily protein, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030247polysaccharide binding
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR025287WAK_GUB
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0030247 polysaccharide binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G000900.1Lsi05G000900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 319..362
score: 2.5
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 320..361
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 320..362
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 316..364
score: 4.6
IPR025287Wall-associated receptor kinase, galacturonan-binding domainPFAMPF13947GUB_WAK_bindcoord: 40..104
score: 3.
NoneNo IPR availablePANTHERPTHR27009FAMILY NOT NAMEDcoord: 4..237
score: 2.4
NoneNo IPR availablePANTHERPTHR27009:SF18SUBFAMILY NOT NAMEDcoord: 4..237
score: 2.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 313..368
score: 1.09

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G000900Melon (DHL92) v3.6.1lsimedB352
Lsi05G000900Melon (DHL92) v3.6.1lsimedB365
Lsi05G000900Melon (DHL92) v3.6.1lsimedB384
Lsi05G000900Silver-seed gourdcarlsiB460
Lsi05G000900Silver-seed gourdcarlsiB490
Lsi05G000900Silver-seed gourdcarlsiB904
Lsi05G000900Cucumber (Chinese Long) v3cuclsiB238
Lsi05G000900Cucumber (Chinese Long) v3cuclsiB401
Lsi05G000900Watermelon (97103) v2lsiwmbB318
Lsi05G000900Watermelon (97103) v2lsiwmbB329
Lsi05G000900Watermelon (97103) v2lsiwmbB339
Lsi05G000900Wax gourdlsiwgoB418
Lsi05G000900Wax gourdlsiwgoB431
Lsi05G000900Wax gourdlsiwgoB442
Lsi05G000900Bottle gourd (USVL1VR-Ls)lsilsiB013
Lsi05G000900Bottle gourd (USVL1VR-Ls)lsilsiB158
Lsi05G000900Cucumber (Gy14) v1cgylsiB013
Lsi05G000900Cucumber (Gy14) v1cgylsiB348
Lsi05G000900Cucurbita maxima (Rimu)cmalsiB289
Lsi05G000900Cucurbita maxima (Rimu)cmalsiB318
Lsi05G000900Cucurbita maxima (Rimu)cmalsiB385
Lsi05G000900Cucurbita maxima (Rimu)cmalsiB584
Lsi05G000900Cucurbita moschata (Rifu)cmolsiB278
Lsi05G000900Cucurbita moschata (Rifu)cmolsiB307
Lsi05G000900Cucurbita moschata (Rifu)cmolsiB370
Lsi05G000900Cucurbita moschata (Rifu)cmolsiB559
Lsi05G000900Cucurbita pepo (Zucchini)cpelsiB037
Lsi05G000900Cucurbita pepo (Zucchini)cpelsiB154
Lsi05G000900Cucurbita pepo (Zucchini)cpelsiB178
Lsi05G000900Cucurbita pepo (Zucchini)cpelsiB622
Lsi05G000900Melon (DHL92) v3.5.1lsimeB350
Lsi05G000900Wild cucumber (PI 183967)cpilsiB217
Lsi05G000900Wild cucumber (PI 183967)cpilsiB381
Lsi05G000900Cucumber (Chinese Long) v2culsiB220
Lsi05G000900Cucumber (Chinese Long) v2culsiB379
Lsi05G000900Melon (DHL92) v3.5.1lsimeB337
Lsi05G000900Melon (DHL92) v3.5.1lsimeB368
Lsi05G000900Watermelon (Charleston Gray)lsiwcgB324
Lsi05G000900Watermelon (Charleston Gray)lsiwcgB332
Lsi05G000900Watermelon (Charleston Gray)lsiwcgB342
Lsi05G000900Watermelon (97103) v1lsiwmB361
Lsi05G000900Watermelon (97103) v1lsiwmB372
Lsi05G000900Watermelon (97103) v1lsiwmB376
Lsi05G000900Cucumber (Gy14) v2cgyblsiB207
Lsi05G000900Cucumber (Gy14) v2cgyblsiB343