Lsi05G000830 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G000830
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCyclic nucleotide-gated ion channel, putative
Locationchr05 : 1559095 .. 1560375 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCAGCTCTTTACAGAGGGTTGGCTTCTAGTTTTGATGGAATTATAAGAACTGAGAAGCTACTGAAATCTTCTTCTTCTAATAAACTCATGCCTGAAGGCTTTCCCTCAGAGAAGAAAAGTCTTGATCCACAAGGGCCATTTCTCCAAAGTTGGAACAAGATATTTGTGCTGTCTTGTGTGGTTTCTGTTTCGTTGGTTCCTTTGTTCTTCTATGTTCCTGTGATTGATAATAGAAATATGTGTCTTTGGTTAGATAGGAAAGTGGAGACTGTAGTCTGTATAGTACAGGATTTATCGCTCCCCTCTTCACGAGTATTCGGAAGAGGTGTTTTAGTAGAAGATTCCTCGTCATTAGCAACGAGGTATCTGTCATCATACTTTCTAATTGACATTTCTTTAGTCCTCCCACTTCTATAGGTGAGGAAAGTTTCTTAGAACTTGACAGCATGTCTGCTTTACTGTTAATTTGTTAGCAGCATTTGCTTCCAATGCCAATTTCAATGATTCAGCATTTGCTTTACTCTTTGCAGTATTTTGTTACTTCAAATAGGGTAGTTTTACAATCCATTAACTTCTAGAATTTCTATGATGTTGAACATTTTGCCATCAAGTATCGAAGTAGTTTTCTGGATACTTGTACTTCTCTCTTGGATGCAGCTCTTTGGGGCAAAATCTTACAAGTCCTTGCACATGGGAAAACTGCTTTTCCATTTTCGTTTGCATCTCTAGTGTAGTGAGGCAATGTGCAGGTTGGTACTAGTTATTCTTGCTGCTGTTTGTCATCTTAGGCTGGCATAGAATCCTTTACAAGAATGAAGGTTGGGCATTTGATTATGGGCTGTTGAGAAGCAGATAAATCTACTTGTTATCAAAGCCTATGTAATATTTGATGCATATTTTACATTAATATGGTTTTAGAACCTTTATTCATTGGGTTATGTATGAAATCTTGTGCAATTCTTCTTAGAAAGCTGAGTCTCTCTCTGTGTTAAACTTGCTGCGGAACAGATGTATTGGCAATCCACAAACGCGAGAGTGGATGAGATGAGATTAAGAAGGAAAGATATTGTACACAGAAGATAAAGCTGCATTGTTCAGGAAGGCGATCGAGTCGATGAAATGCTCTTCATCATGAGAGACAAGCTCTTAACCATGACTACAAATGGTGGGAGAAGTGGATTCTTCAAGTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTACTGACTTGGGCTCTAGCTGAGCCTGATTTTTACCATGAAAGATAA

mRNA sequence

ATGAATCCAGCTCTTTACAGAGGGTTGGCTTCTAGTTTTGATGGAATTATAAGAACTGAGAAGCTACTGAAATCTTCTTCTTCTAATAAACTCATGCCTGAAGGCTTTCCCTCAGAGAAGAAAAGTCTTGATCCACAAGGGCCATTTCTCCAAAGTTGGAACAAGATATTTGTGCTGTCTTGTGTGGTTTCTGTTTCGTTGGTTCCTTTGTTCTTCTATGTTCCTGTGATTGATAATAGAAATATGTGTCTTTGGTTAGATAGGAAAGTGGAGACTGTAGTCTGTATAGTACAGGATTTATCGCTCCCCTCTTCACGAGTATTCGGAAGAGGTGTTTTAGTAGAAGATTCCTCGTCATTAGCAACGAGCTCTTTGGGGCAAAATCTTACAAGTCCTTGCACATGGGAAAACTGCTTTTCCATTTTCGTTTGCATCTCTAGTGTAGAAGGCGATCGAGTCGATGAAATGCTCTTCATCATGAGAGACAAGCTCTTAACCATGACTACAAATGGTGGGAGAAGTGGATTCTTCAAGTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTACTGACTTGGGCTCTAGCTGAGCCTGATTTTTACCATGAAAGATAA

Coding sequence (CDS)

ATGAATCCAGCTCTTTACAGAGGGTTGGCTTCTAGTTTTGATGGAATTATAAGAACTGAGAAGCTACTGAAATCTTCTTCTTCTAATAAACTCATGCCTGAAGGCTTTCCCTCAGAGAAGAAAAGTCTTGATCCACAAGGGCCATTTCTCCAAAGTTGGAACAAGATATTTGTGCTGTCTTGTGTGGTTTCTGTTTCGTTGGTTCCTTTGTTCTTCTATGTTCCTGTGATTGATAATAGAAATATGTGTCTTTGGTTAGATAGGAAAGTGGAGACTGTAGTCTGTATAGTACAGGATTTATCGCTCCCCTCTTCACGAGTATTCGGAAGAGGTGTTTTAGTAGAAGATTCCTCGTCATTAGCAACGAGCTCTTTGGGGCAAAATCTTACAAGTCCTTGCACATGGGAAAACTGCTTTTCCATTTTCGTTTGCATCTCTAGTGTAGAAGGCGATCGAGTCGATGAAATGCTCTTCATCATGAGAGACAAGCTCTTAACCATGACTACAAATGGTGGGAGAAGTGGATTCTTCAAGTCTGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTACTGACTTGGGCTCTAGCTGAGCCTGATTTTTACCATGAAAGATAA

Protein sequence

MNPALYRGLASSFDGIIRTEKLLKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSVSLVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDLSLPSSRVFGRGVLVEDSSSLATSSLGQNLTSPCTWENCFSIFVCISSVEGDRVDEMLFIMRDKLLTMTTNGGRSGFFKSDFLMAGDFCGEELLTWALAEPDFYHER
Homology
[Close]
BLAST of Lsi05G000830 vs. Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 61/140 (43.57%), Postives = 81/140 (57.86%), Query Frame = 1 

Query: 6   YRGLASSFDGIIRTEKLLKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSV 65
           YR   SS   I   ++  KS S  + + +G  S  K LDPQGPFLQ WNKIFVL+C+++V
Sbjct: 48  YRSFESSSARIKLFKRSYKSYSFKEAVSKGIGSTHKILDPQGPFLQRWNKIFVLACIIAV 107

Query: 66  SLVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDLS-----------------LPSSRVF 125
           SL PLFFYVP+ID+   CL +D+K+E    +++  +                  PSSRVF
Sbjct: 108 SLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVF 167

Query: 126 GRGVLVEDSSSLATSSLGQN 129
           GRGVLVED   +A   L  +
Sbjct: 168 GRGVLVEDKREIAKRYLSSH 187

[Close]
BLAST of Lsi05G000830 vs. Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 1 

Query: 38  SEKKSLDPQGPFLQSWNKIFVLSCVVSVSLVPLFFYVPVIDNRNMCLWLDRKVETVVCIV 97
           + K  ++PQ  FLQ+WNKIF+ +CVV++++ PLFFY+P++D+   CL LD K+E    ++
Sbjct: 64  TRKNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLL 123

Query: 98  QDL-----------------SLPSSRVFGRGVLVEDSSSLATSSL 126
           + L                   PSSRVFGRG LV+D+ ++A   L
Sbjct: 124 RTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYL 168

[Close]
BLAST of Lsi05G000830 vs. Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 3.1e-14
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 1 

Query: 8   GLASSFDGIIRTEKLLKSSSSNKLMPEGFP-SEKKSLDPQGPFLQSWNKIFVLSCVVSVS 67
           G+    +G+    K   S  +  + PE    SEKK  DPQ   L  WN++FV+SC+++VS
Sbjct: 62  GVKIGSEGLKTIGKSFTSGVTRAVFPEDLRVSEKKIFDPQDKTLLLWNRMFVISCILAVS 121

Query: 68  LVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDL-----------------SLPSSRVFG 122
           + PLFFY+P++DN   C+ +D K+      ++ +                   PSSRVFG
Sbjct: 122 VDPLFFYLPIVDNSKNCIGIDSKLAVTTTTLRTIIDVFYLTRMALQFRTAYIAPSSRVFG 181

[Close]
BLAST of Lsi05G000830 vs. Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = 1 

Query: 38  SEKKSLDPQGPFLQSWNKIFVLSCVVSVSLVPLFFYVPVIDNRNMCLWLDRKVETVVCIV 97
           ++K  ++PQG FLQ+WNKIF+ + V+++++ PLFFY+P++D    CL L R +E    ++
Sbjct: 64  TQKNIINPQGSFLQNWNKIFLFASVIALAIDPLFFYIPIVDGERHCLNLHRNLEIAASVL 123

Query: 98  QDL-----------------SLPSSRVFGRGVLVEDSSSLATSSL 126
           +                     PSSRVFGRG LV+D  ++A   L
Sbjct: 124 RTFIDAFYIIHIVFQFRTAYISPSSRVFGRGELVDDPKAIAIKYL 168

[Close]
BLAST of Lsi05G000830 vs. Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-13
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 1 

Query: 7   RGLASSFDGIIRTEKLLKSSSSNKLMPEGFP-SEKKSLDPQGPFLQSWNKIFVLSCVVSV 66
           +G     +G+    + +    S  + PE    SEKK  DPQ  FL   NK+FV SC+++V
Sbjct: 67  KGFRKGSEGLWSIGRSIGLGVSRAVFPEDLEVSEKKIFDPQDKFLLLCNKLFVASCILAV 126

Query: 67  SLVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDL-----------------SLPSSRVF 126
           S+ PLF Y+P I+++  C+ +DRK+  +V  ++ +                   PSSRVF
Sbjct: 127 SVDPLFLYLPFINDKAKCVGIDRKLAIIVTTIRTVIDSFYLFHMALRFRTAYVAPSSRVF 186

Query: 127 GRGVLVEDSSSLATSSLGQ 128
           GRG LV D + +A   L Q
Sbjct: 187 GRGELVIDPAQIAKRYLQQ 205

[Close]
BLAST of Lsi05G000830 vs. TrEMBL
Match: A0A0A0L897_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G576840 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.2e-32
Identity = 80/120 (66.67%), Postives = 88/120 (73.33%), Query Frame = 1 

Query: 23  LKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSVSLVPLFFYVPVIDNRNM 82
           L++SSSNKL PEGFPSEKK LDPQGPFLQSWNK+FVLSCV+SVSL PLFFYVPVID R M
Sbjct: 3   LEASSSNKLRPEGFPSEKKILDPQGPFLQSWNKLFVLSCVISVSLDPLFFYVPVIDMRKM 62

Query: 83  CLWLDRKVETVVCIVQDLS-----------------LPSSRVFGRGVLVEDSSSLATSSL 126
           CL LD KVETVVCI++  +                  PSSRVFGRGVL EDS  +AT  L
Sbjct: 63  CLRLDGKVETVVCILRFFTDLFYVVHIVFQFRTGFISPSSRVFGRGVLEEDSLRIATRYL 122

[Close]
BLAST of Lsi05G000830 vs. TrEMBL
Match: I1KAP5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G126600 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.5e-27
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 1 

Query: 7   RGLASSFDGIIRTEKLLKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSVS 66
           RGL SS +GI R  K  KS   N+++   F S+KK LDPQGPFLQ WNKIFVLSC+++VS
Sbjct: 48  RGLESSSEGIKRFRKSFKSLPYNRVLSRNFSSKKKILDPQGPFLQKWNKIFVLSCLIAVS 107

Query: 67  LVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDLS-----------------LPSSRVFG 122
           L PLFFYVPVID+   CL +DRK+E    +++  S                  PSSRVFG
Sbjct: 108 LDPLFFYVPVIDDNKKCLSMDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFG 167

[Close]
BLAST of Lsi05G000830 vs. TrEMBL
Match: A0A151TS64_CAJCA (Cyclic nucleotide-gated ion channel 1 OS=Cajanus cajan GN=KK1_009077 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 70/132 (53.03%), Postives = 85/132 (64.39%), Query Frame = 1 

Query: 7   RGLASSFDGIIRTEKLLKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSVS 66
           RGL SS +GI R  K  KS   N+++   F S KK LDPQGPFLQ WNKIFVLSC+++VS
Sbjct: 48  RGLESSSEGIKRFRKSFKSLPYNRVLSGSFSSRKKILDPQGPFLQKWNKIFVLSCLIAVS 107

Query: 67  LVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDLS-----------------LPSSRVFG 122
           L PLFFYVPVID+   CL LDRK+E    +++  S                  PSSRVFG
Sbjct: 108 LDPLFFYVPVIDDNKKCLSLDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFG 167

[Close]
BLAST of Lsi05G000830 vs. TrEMBL
Match: A0A0D2VTT6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G003500 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 67/132 (50.76%), Postives = 86/132 (65.15%), Query Frame = 1 

Query: 7   RGLASSFDGIIRTEKLLKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSVS 66
           RG+ S  + I    K  KSSS N ++ +GF S KK LDPQGPFLQ WNKIFVLSC+++VS
Sbjct: 48  RGVESGSERIKAIRKSFKSSSFNHVVAKGFGSSKKVLDPQGPFLQRWNKIFVLSCIIAVS 107

Query: 67  LVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDLS-----------------LPSSRVFG 122
           + PLFFYVPV+++   CL LD K+ET  C+++  +                  PSSRVFG
Sbjct: 108 IDPLFFYVPVVNDDKKCLALDEKMETTACVLRSFTDIFYIIHIIFQFRTGFIAPSSRVFG 167

[Close]
BLAST of Lsi05G000830 vs. TrEMBL
Match: I1JYT9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G237400 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 69/132 (52.27%), Postives = 85/132 (64.39%), Query Frame = 1 

Query: 7   RGLASSFDGIIRTEKLLKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSVS 66
           RGL SS +GI R  K  KS   N+++   F S KK LDPQGPFLQ WNKIFVLSC+++VS
Sbjct: 48  RGLESSSEGIKRFRKSFKSLPYNRVLSRNFSSRKKILDPQGPFLQKWNKIFVLSCLIAVS 107

Query: 67  LVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDLS-----------------LPSSRVFG 122
           L PLFFYVPVID+   CL +DRK+E    +++  S                  PSSRVFG
Sbjct: 108 LDPLFFYVPVIDDNKKCLSMDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFG 167

[Close]
BLAST of Lsi05G000830 vs. TAIR10
Match: AT5G53130.1 (AT5G53130.1 cyclic nucleotide gated channel 1)

HSP 1 Score: 110.9 bits (276), Expect = 9.3e-25
Identity = 61/140 (43.57%), Postives = 81/140 (57.86%), Query Frame = 1 

Query: 6   YRGLASSFDGIIRTEKLLKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSV 65
           YR   SS   I   ++  KS S  + + +G  S  K LDPQGPFLQ WNKIFVL+C+++V
Sbjct: 48  YRSFESSSARIKLFKRSYKSYSFKEAVSKGIGSTHKILDPQGPFLQRWNKIFVLACIIAV 107

Query: 66  SLVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDLS-----------------LPSSRVF 125
           SL PLFFYVP+ID+   CL +D+K+E    +++  +                  PSSRVF
Sbjct: 108 SLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVF 167

Query: 126 GRGVLVEDSSSLATSSLGQN 129
           GRGVLVED   +A   L  +
Sbjct: 168 GRGVLVEDKREIAKRYLSSH 187

[Close]
BLAST of Lsi05G000830 vs. TAIR10
Match: AT1G01340.2 (AT1G01340.2 cyclic nucleotide gated channel 10)

HSP 1 Score: 84.3 bits (207), Expect = 9.3e-17
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 1 

Query: 38  SEKKSLDPQGPFLQSWNKIFVLSCVVSVSLVPLFFYVPVIDNRNMCLWLDRKVETVVCIV 97
           + K  ++PQ  FLQ+WNKIF+ +CVV++++ PLFFY+P++D+   CL LD K+E    ++
Sbjct: 64  TRKNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLL 123

Query: 98  QDL-----------------SLPSSRVFGRGVLVEDSSSLATSSL 126
           + L                   PSSRVFGRG LV+D+ ++A   L
Sbjct: 124 RTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYL 168

[Close]
BLAST of Lsi05G000830 vs. TAIR10
Match: AT1G19780.1 (AT1G19780.1 cyclic nucleotide gated channel 8)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-15
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 1 

Query: 8   GLASSFDGIIRTEKLLKSSSSNKLMPEGFP-SEKKSLDPQGPFLQSWNKIFVLSCVVSVS 67
           G+    +G+    K   S  +  + PE    SEKK  DPQ   L  WN++FV+SC+++VS
Sbjct: 62  GVKIGSEGLKTIGKSFTSGVTRAVFPEDLRVSEKKIFDPQDKTLLLWNRMFVISCILAVS 121

Query: 68  LVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDL-----------------SLPSSRVFG 122
           + PLFFY+P++DN   C+ +D K+      ++ +                   PSSRVFG
Sbjct: 122 VDPLFFYLPIVDNSKNCIGIDSKLAVTTTTLRTIIDVFYLTRMALQFRTAYIAPSSRVFG 181

[Close]
BLAST of Lsi05G000830 vs. TAIR10
Match: AT4G01010.1 (AT4G01010.1 cyclic nucleotide-gated channel 13)

HSP 1 Score: 78.2 bits (191), Expect = 6.7e-15
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = 1 

Query: 38  SEKKSLDPQGPFLQSWNKIFVLSCVVSVSLVPLFFYVPVIDNRNMCLWLDRKVETVVCIV 97
           ++K  ++PQG FLQ+WNKIF+ + V+++++ PLFFY+P++D    CL L R +E    ++
Sbjct: 64  TQKNIINPQGSFLQNWNKIFLFASVIALAIDPLFFYIPIVDGERHCLNLHRNLEIAASVL 123

Query: 98  QDL-----------------SLPSSRVFGRGVLVEDSSSLATSSL 126
           +                     PSSRVFGRG LV+D  ++A   L
Sbjct: 124 RTFIDAFYIIHIVFQFRTAYISPSSRVFGRGELVDDPKAIAIKYL 168

[Close]
BLAST of Lsi05G000830 vs. TAIR10
Match: AT2G23980.1 (AT2G23980.1 cyclic nucleotide-gated channel 6)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-14
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 1 

Query: 7   RGLASSFDGIIRTEKLLKSSSSNKLMPEGFP-SEKKSLDPQGPFLQSWNKIFVLSCVVSV 66
           +G     +G+    + +    S  + PE    SEKK  DPQ  FL   NK+FV SC+++V
Sbjct: 67  KGFRKGSEGLWSIGRSIGLGVSRAVFPEDLEVSEKKIFDPQDKFLLLCNKLFVASCILAV 126

Query: 67  SLVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDL-----------------SLPSSRVF 126
           S+ PLF Y+P I+++  C+ +DRK+  +V  ++ +                   PSSRVF
Sbjct: 127 SVDPLFLYLPFINDKAKCVGIDRKLAIIVTTIRTVIDSFYLFHMALRFRTAYVAPSSRVF 186

Query: 127 GRGVLVEDSSSLATSSLGQ 128
           GRG LV D + +A   L Q
Sbjct: 187 GRGELVIDPAQIAKRYLQQ 205

[Close]
BLAST of Lsi05G000830 vs. NCBI nr
Match: gi|659077692|ref|XP_008439332.1| (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 91/142 (64.08%), Postives = 100/142 (70.42%), Query Frame = 1 

Query: 1   MNPALYRGLASSFDGIIRTEKLLKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLS 60
           MN AL+RGLAS FDGI       ++ SSN LMPEGFPSEKK LDPQGPFLQSWNK+FVLS
Sbjct: 1   MNSALHRGLASGFDGI-------RNFSSNNLMPEGFPSEKKILDPQGPFLQSWNKLFVLS 60

Query: 61  CVVSVSLVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDLS-----------------LP 120
           CV+SVSL PLFFYVPVID R MCL LD KVETVVCI++  +                  P
Sbjct: 61  CVISVSLDPLFFYVPVIDMRKMCLRLDGKVETVVCILRFFTDLFYVVHIVFQFRTGFISP 120

Query: 121 SSRVFGRGVLVEDSSSLATSSL 126
           SSRVFGRGVL EDS  +AT  L
Sbjct: 121 SSRVFGRGVLEEDSLRIATRYL 135

[Close]
BLAST of Lsi05G000830 vs. NCBI nr
Match: gi|449465206|ref|XP_004150319.1| (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 7.4e-32
Identity = 80/120 (66.67%), Postives = 88/120 (73.33%), Query Frame = 1 

Query: 23  LKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSVSLVPLFFYVPVIDNRNM 82
           L++SSSNKL PEGFPSEKK LDPQGPFLQSWNK+FVLSCV+SVSL PLFFYVPVID R M
Sbjct: 3   LEASSSNKLRPEGFPSEKKILDPQGPFLQSWNKLFVLSCVISVSLDPLFFYVPVIDMRKM 62

Query: 83  CLWLDRKVETVVCIVQDLS-----------------LPSSRVFGRGVLVEDSSSLATSSL 126
           CL LD KVETVVCI++  +                  PSSRVFGRGVL EDS  +AT  L
Sbjct: 63  CLRLDGKVETVVCILRFFTDLFYVVHIVFQFRTGFISPSSRVFGRGVLEEDSLRIATRYL 122

[Close]
BLAST of Lsi05G000830 vs. NCBI nr
Match: gi|700203037|gb|KGN58170.1| (hypothetical protein Csa_3G576840 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 7.4e-32
Identity = 80/120 (66.67%), Postives = 88/120 (73.33%), Query Frame = 1 

Query: 23  LKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSVSLVPLFFYVPVIDNRNM 82
           L++SSSNKL PEGFPSEKK LDPQGPFLQSWNK+FVLSCV+SVSL PLFFYVPVID R M
Sbjct: 3   LEASSSNKLRPEGFPSEKKILDPQGPFLQSWNKLFVLSCVISVSLDPLFFYVPVIDMRKM 62

Query: 83  CLWLDRKVETVVCIVQDLS-----------------LPSSRVFGRGVLVEDSSSLATSSL 126
           CL LD KVETVVCI++  +                  PSSRVFGRGVL EDS  +AT  L
Sbjct: 63  CLRLDGKVETVVCILRFFTDLFYVVHIVFQFRTGFISPSSRVFGRGVLEEDSLRIATRYL 122

[Close]
BLAST of Lsi05G000830 vs. NCBI nr
Match: gi|356516029|ref|XP_003526699.1| (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max])

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-26
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 1 

Query: 7   RGLASSFDGIIRTEKLLKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSVS 66
           RGL SS +GI R  K  KS   N+++   F S+KK LDPQGPFLQ WNKIFVLSC+++VS
Sbjct: 48  RGLESSSEGIKRFRKSFKSLPYNRVLSRNFSSKKKILDPQGPFLQKWNKIFVLSCLIAVS 107

Query: 67  LVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDLS-----------------LPSSRVFG 122
           L PLFFYVPVID+   CL +DRK+E    +++  S                  PSSRVFG
Sbjct: 108 LDPLFFYVPVIDDNKKCLSMDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFG 167

[Close]
BLAST of Lsi05G000830 vs. NCBI nr
Match: gi|951059350|ref|XP_014522383.1| (PREDICTED: cyclic nucleotide-gated ion channel 1 [Vigna radiata var. radiata])

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 70/132 (53.03%), Postives = 85/132 (64.39%), Query Frame = 1 

Query: 7   RGLASSFDGIIRTEKLLKSSSSNKLMPEGFPSEKKSLDPQGPFLQSWNKIFVLSCVVSVS 66
           RGL SS +G+ R  K  KS   N+++   F S KK LDPQGPFLQ WNKIFVLSC+++VS
Sbjct: 48  RGLESSSEGMKRFRKSFKSLPYNRVLSGSFSSRKKILDPQGPFLQKWNKIFVLSCLIAVS 107

Query: 67  LVPLFFYVPVIDNRNMCLWLDRKVETVVCIVQDLS-----------------LPSSRVFG 122
           L PLFFYVPVID+ N CL LDRK+E    +++  S                  PSSRVFG
Sbjct: 108 LDPLFFYVPVIDDNNKCLSLDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFG 167

The following BLAST results are available for this feature:
BLAST of Lsi05G000830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CNGC1_ARATH1.6e-2343.57Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1[more]
CNG10_ARATH1.7e-1540.00Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC1... [more]
CNGC8_ARATH3.1e-1434.85Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 ... [more]
CNG13_ARATH1.2e-1337.14Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC1... [more]
CNGC6_ARATH2.6e-1334.53Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 ... [more]
BLAST of Lsi05G000830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L897_CUCSA5.2e-3266.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G576840 PE=4 SV=1[more]
I1KAP5_SOYBN8.5e-2752.27Uncharacterized protein OS=Glycine max GN=GLYMA_06G126600 PE=4 SV=1[more]
A0A151TS64_CAJCA1.1e-2653.03Cyclic nucleotide-gated ion channel 1 OS=Cajanus cajan GN=KK1_009077 PE=4 SV=1[more]
A0A0D2VTT6_GOSRA1.1e-2650.76Uncharacterized protein OS=Gossypium raimondii GN=B456_012G003500 PE=4 SV=1[more]
I1JYT9_SOYBN1.1e-2652.27Uncharacterized protein OS=Glycine max GN=GLYMA_04G237400 PE=4 SV=1[more]
BLAST of Lsi05G000830 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G53130.19.3e-2543.57 cyclic nucleotide gated channel 1[more]
AT1G01340.29.3e-1740.00 cyclic nucleotide gated channel 10[more]
AT1G19780.11.8e-1534.85 cyclic nucleotide gated channel 8[more]
AT4G01010.16.7e-1537.14 cyclic nucleotide-gated channel 13[more]
AT2G23980.11.5e-1434.53 cyclic nucleotide-gated channel 6[more]
BLAST of Lsi05G000830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077692|ref|XP_008439332.1|1.3e-3664.08PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo][more]
gi|449465206|ref|XP_004150319.1|7.4e-3266.67PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus][more]
gi|700203037|gb|KGN58170.1|7.4e-3266.67hypothetical protein Csa_3G576840 [Cucumis sativus][more]
gi|356516029|ref|XP_003526699.1|1.2e-2652.27PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max][more]
gi|951059350|ref|XP_014522383.1|1.6e-2653.03PREDICTED: cyclic nucleotide-gated ion channel 1 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034220 ion transmembrane transport
biological_process GO:0071805 potassium ion transmembrane transport
biological_process GO:0042391 regulation of membrane potential
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005887 integral component of plasma membrane
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G000830.1Lsi05G000830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 149..195
score: 9.
NoneNo IPR availablePANTHERPTHR10217VOLTAGE AND LIGAND GATED POTASSIUM CHANNELcoord: 6..121
score: 2.3
NoneNo IPR availablePANTHERPTHR10217:SF527CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1coord: 6..121
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G000830MELO3C006981.2Melon (DHL92) v3.6.1lsimedB405
Lsi05G000830MELO3C005876.2Melon (DHL92) v3.6.1lsimedB352
Lsi05G000830Cla97C05G091000Watermelon (97103) v2lsiwmbB329
Lsi05G000830Cla97C01G000550Watermelon (97103) v2lsiwmbB318
Lsi05G000830Bhi01G001088Wax gourdlsiwgoB431
Lsi05G000830Bhi12G000550Wax gourdlsiwgoB418
Lsi05G000830Cp4.1LG05g06080Cucurbita pepo (Zucchini)cpelsiB622
Lsi05G000830Cp4.1LG09g00470Cucurbita pepo (Zucchini)cpelsiB037
Lsi05G000830CsGy3G024840Cucumber (Gy14) v2cgyblsiB207
Lsi05G000830CsGy5G000520Cucumber (Gy14) v2cgyblsiB343
Lsi05G000830Carg20349Silver-seed gourdcarlsiB490
Lsi05G000830Carg14023Silver-seed gourdcarlsiB460
Lsi05G000830CsaV3_5G000590Cucumber (Chinese Long) v3cuclsiB401
Lsi05G000830CsaV3_3G028090Cucumber (Chinese Long) v3cuclsiB238
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi05G000830Lsi09G000290Bottle gourd (USVL1VR-Ls)lsilsiB013
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G000830Watermelon (97103) v2lsiwmbB339
Lsi05G000830Wax gourdlsiwgoB442
Lsi05G000830Bottle gourd (USVL1VR-Ls)lsilsiB158
Lsi05G000830Cucumber (Gy14) v1cgylsiB348
Lsi05G000830Cucurbita maxima (Rimu)cmalsiB289
Lsi05G000830Cucurbita maxima (Rimu)cmalsiB318
Lsi05G000830Cucurbita maxima (Rimu)cmalsiB385
Lsi05G000830Cucurbita maxima (Rimu)cmalsiB584
Lsi05G000830Cucurbita moschata (Rifu)cmolsiB278
Lsi05G000830Cucurbita moschata (Rifu)cmolsiB307
Lsi05G000830Cucurbita moschata (Rifu)cmolsiB370
Lsi05G000830Cucurbita moschata (Rifu)cmolsiB559
Lsi05G000830Cucurbita pepo (Zucchini)cpelsiB154
Lsi05G000830Cucurbita pepo (Zucchini)cpelsiB178
Lsi05G000830Melon (DHL92) v3.5.1lsimeB350
Lsi05G000830Wild cucumber (PI 183967)cpilsiB381
Lsi05G000830Cucumber (Chinese Long) v2culsiB379
Lsi05G000830Melon (DHL92) v3.5.1lsimeB337
Lsi05G000830Melon (DHL92) v3.5.1lsimeB368
Lsi05G000830Melon (DHL92) v3.5.1lsimeB384
Lsi05G000830Watermelon (Charleston Gray)lsiwcgB324
Lsi05G000830Watermelon (Charleston Gray)lsiwcgB332
Lsi05G000830Watermelon (Charleston Gray)lsiwcgB342
Lsi05G000830Watermelon (97103) v1lsiwmB361
Lsi05G000830Watermelon (97103) v1lsiwmB372
Lsi05G000830Watermelon (97103) v1lsiwmB376
Lsi05G000830Melon (DHL92) v3.6.1lsimedB365
Lsi05G000830Melon (DHL92) v3.6.1lsimedB384
Lsi05G000830Silver-seed gourdcarlsiB904