Lsi04G023920 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G023920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_49
Locationchr04 : 31049768 .. 31052712 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTATTAAAAACAACGAGACAGAGAGACAGAAGAACAATCTTTTTCCTTTTTACGTTCTCGCCATCGATTTCTTCAAATTCTCATCTTCAAGCTGCGCTCTTCATCATCATTCTTCTTCCAATTTTCCCTTTCACCATACTTCGTCTCGTTCAAGCTTCAATTTTTTTTGTTCTCAGGGTCATAGCTTCTCTTATTCATTCTTCAGCTCGCTGAGATTAAGACGGAATTTGATTGCTACTGTCAAAATTGAATAATTGTTTCTACCAGCTGCGATTTCCATTTACGACCTCGATACCTCCGTCAACCGTTGCAGCCAGCATCGGAGACGGTGTCGAATTCTGAAGCAGAAGAATGAGGCAGTCGCCGGACTTCGGAGACGATTACGCCCATGGAACTCACATCCAGTCCTTTTCGTCGGCTTCGCTCTTCCCTTCTTCTTCTCGCAGAGATGTTTATTACAGGTTCAATCTAACCTCTGCCTTCTATCTCACTGTGTAGTGAATTTTTTGTTCTTCAGATATCTGTTTATATACTGTACGGGCTTCTGAATCTCTTTTTGTTTTTTTGTTTTTTGTTCTGATTGGAGGGTTGGGTGGAATTGTCTGATTTATGTGACGGGTTGGGGACTATCTTTTGGTTTGTACATTACTTGAATCGATTTCGAAAATCGTGATTGCTTCTTGAGTACGATGTGATCCTGAGTGCTTTTGGTGAAAGATTGTTTGGAACTTTGGGTTGGGTTACATTGGACTGTAGTCGAGGGGAATTCAGCATATTTTAGTGTTGAAAAGAGAAGAAAAAGGAGTTTTCTGTGTTCATATTGGAATTGGAGAACTGTCAATAGCTGTAATAGAGCAGAACCGTAGGGCACTGACTGGTCTGACCTGTTTAAGAAATTCTCGTAGTTATTAGCTTGAAGGAGATGGCTATTGTGTTTTTTGACTTTGATGAATTTATTTAAAACAACTGTAGGGGAACTCCGTTTAGCATTGAAGGAGATGGATTTGTTGATTTAGATTGAAACTTTACCTATTTGTGAACTTCCATCATAACAATAATGAACTCTGACATGTGGCTGATTTGGTGTGTATATTGCATTTCCTTCTTTTTCTTATTTGAAACTCTTCCCTCTGCTCTCTCTGGTAGCTATTCATTAATTTTTCTCACGTTTCATGATGAGAAAGAGAGGAACAACTACCCAATGGTGCTTTTATGAAATAGCTTTTAACTAATAGGGGCCAAGCCCGTCTTGACAATATCAAACTTAAAATCTGCTCTCAGTTGCTCTTTCTAGTGGAGAGGCAATTTTTTCATATTCAATTAAAAACAAATGTAGTAGTAAACATATATTTGATCCAAGACTCAGAGGGATGTGAGATGTCCGAAGACGATGAGAAAGAGAATTCGACTTGAACTCTCCAATAACTCCTTGAAAATGCCTGAGACTGATCCAGATAACAAATCAATTAGTCATGAACCTGCCCTCATATCATGACACCTTGTAGCAAATCCTGTTTCTAGGAGAAATGAAGTTGGTAAAATCTTATCCTCAACCTTAGGTAAATTGACCCTGTGGAACATAAAGATTGAGACAAAGCAAAGGACAATTTTTATGATAAAAATAATTAGCGGCTGTTAAGAACTGTCACATCAAGTCCTTTGCAGCCATTGAGTTCAGACTTCAGAGTACTATGGCTACTCATGAAATTGGAAACCTTGACATGTGATTGTGGGGATTTTTTTTAATTTATTTATTTTTTATTATTATTATTATTATTATTATTATTATTATTTTGTGATTGTGGGGATTCAAGTAGCTTGATGTTTGTTCAGAATTGAAAATGCTTTATTATTATCTAATTTTGTATGAATCATCCTGAAATATATATACCCAAGATCGGTTTTTTCAAGCACAAATTTTGATGGGGCCAACAATGTGTTGCCCTAGAGTAGGGAATCCTCCAAATCCTTATTTTCTTAGTTGGCCCCTAAATGGGAAGCTAACCTAAAAAGGGAGTTCTAGTACCATTCCCATGGCTATACCTAGCATTCTCATCAACTAAGCCACCTCTATGTATTCTTTGCATTTCCTATATGCTTTCTGGTCAACTTGTAATGACAATGGTTTATTTCATACAGTTGTGGGGCCTGTGGATACGAACTGAACTTGAGCTCTGTTAACCGCAATACTTCGACCATTGGCTCTAAATATGGTAAATCGATAAAGCGAGGGATCATATCATTTCTAAACATCGACGAAAGCAGATTTACGCAGGTTGATGAACTTCAATGTGTGCCTCATTTCTCAAAGAACTCTTGGGGTCTGTTTCGTCGAAGAATCAAACTACTGTGTCGAAAGTGTGGAAACCATATTGGAAATGCTCACAGTAGCCATTCTTCCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCCTTGCCCAATGAAGTCTCTAAGTGCATGAAATATGAAGTAAAAATTCGTGCTTTACAACCCTCATCTTCCAACGAATTTGGTACCACAGTTATTTAAACAAGGACCCGGATTTATCGACTGAATGGCTCTTTCGAGCTAAATGAATTGCCTAACAGCAACAAATGCAGGATTCTCGATATGTTTGCTATGTTTTTACTTGTGAATAGAATCGGGTCTCAAATGGAAGGAAAGTGTAATTGAAAGGGTTCCACAGTTATTGTTCTTGCAAAATGGAAAGTATGATTTATACGAGTGAATTGTTTCAAAGCTACTGATGTTTCCTGGTTTGTTTTTCATCATTTTCGTTTTGGTTAAAAAATATTTTGGCCCGAACTTTTATGAAAGTAACAATTTTGACTCTGAACTATAGTTGATAATAATGGAGTCTTTGTACTTTTAAGTTTATAACAATTTAGTTCTTAAACTTTAATAAATAATAGTTTAGTCTTGTACTACATTACTTTTAA

mRNA sequence

AATTATTAAAAACAACGAGACAGAGAGACAGAAGAACAATCTTTTTCCTTTTTACGTTCTCGCCATCGATTTCTTCAAATTCTCATCTTCAAGCTGCGCTCTTCATCATCATTCTTCTTCCAATTTTCCCTTTCACCATACTTCGTCTCGTTCAAGCTTCAATTTTTTTTGTTCTCAGGGTCATAGCTTCTCTTATTCATTCTTCAGCTCGCTGAGATTAAGACGGAATTTGATTGCTACTGTCAAAATTGAATAATTGTTTCTACCAGCTGCGATTTCCATTTACGACCTCGATACCTCCGTCAACCGTTGCAGCCAGCATCGGAGACGGTGTCGAATTCTGAAGCAGAAGAATGAGGCAGTCGCCGGACTTCGGAGACGATTACGCCCATGGAACTCACATCCAGTCCTTTTCGTCGGCTTCGCTCTTCCCTTCTTCTTCTCGCAGAGATGTTTATTACAGTTGTGGGGCCTGTGGATACGAACTGAACTTGAGCTCTGTTAACCGCAATACTTCGACCATTGGCTCTAAATATGGTAAATCGATAAAGCGAGGGATCATATCATTTCTAAACATCGACGAAAGCAGATTTACGCAGGTTGATGAACTTCAATGTGTGCCTCATTTCTCAAAGAACTCTTGGGGTCTGTTTCGTCGAAGAATCAAACTACTGTGTCGAAAGTGTGGAAACCATATTGGAAATGCTCACAGTAGCCATTCTTCCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCCTTGCCCAATGAAGTCTCTAAGTGCATGAAATATGAAGTAAAAATTCGTGCTTTACAACCCTCATCTTCCAACGAATTTGGTACCACAGTTATTTAAACAAGGACCCGGATTTATCGACTGAATGGCTCTTTCGAGCTAAATGAATTGCCTAACAGCAACAAATGCAGGATTCTCGATATGTTTGCTATGTTTTTACTTGTGAATAGAATCGGGTCTCAAATGGAAGGAAAGTGTAATTGAAAGGGTTCCACAGTTATTGTTCTTGCAAAATGGAAAGTATGATTTATACGAGTGAATTGTTTCAAAGCTACTGATGTTTCCTGGTTTGTTTTTCATCATTTTCGTTTTGGTTAAAAAATATTTTGGCCCGAACTTTTATGAAAGTAACAATTTTGACTCTGAACTATAGTTGATAATAATGGAGTCTTTGTACTTTTAAGTTTATAACAATTTAGTTCTTAAACTTTAATAAATAATAGTTTAGTCTTGTACTACATTACTTTTAA

Coding sequence (CDS)

ATGAGGCAGTCGCCGGACTTCGGAGACGATTACGCCCATGGAACTCACATCCAGTCCTTTTCGTCGGCTTCGCTCTTCCCTTCTTCTTCTCGCAGAGATGTTTATTACAGTTGTGGGGCCTGTGGATACGAACTGAACTTGAGCTCTGTTAACCGCAATACTTCGACCATTGGCTCTAAATATGGTAAATCGATAAAGCGAGGGATCATATCATTTCTAAACATCGACGAAAGCAGATTTACGCAGGTTGATGAACTTCAATGTGTGCCTCATTTCTCAAAGAACTCTTGGGGTCTGTTTCGTCGAAGAATCAAACTACTGTGTCGAAAGTGTGGAAACCATATTGGAAATGCTCACAGTAGCCATTCTTCCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCCTTGCCCAATGAAGTCTCTAAGTGCATGAAATATGAAGTAAAAATTCGTGCTTTACAACCCTCATCTTCCAACGAATTTGGTACCACAGTTATTTAA

Protein sequence

MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI
Homology
[Close]
BLAST of Lsi04G023920 vs. Swiss-Prot
Match: Y4833_ARATH (Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana GN=At4g08330 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.8e-44
Identity = 91/141 (64.54%), Postives = 107/141 (75.89%), Query Frame = 1 

Query: 19  SFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDES 78
           SFSS+S   SSS R V YSCG+CGYELNLSS NR TSTIGSKYGKS+K GIISF NIDE 
Sbjct: 23  SFSSSS--SSSSMRHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEG 82

Query: 79  RFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSDGSDSSLP 138
           RF+QVDE QC+PHFS+ SWGLFR R KLLCRKC N+IGNA    +    LV+  SD + P
Sbjct: 83  RFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSP 142

Query: 139 NEVSKCMKYEVKIRALQPSSS 160
             +    KY+++IR+LQPSS+
Sbjct: 143 -RIGSVTKYDIRIRSLQPSSA 160

[Close]
BLAST of Lsi04G023920 vs. TrEMBL
Match: A0A0A0L375_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G363480 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.3e-83
Identity = 154/168 (91.67%), Postives = 164/168 (97.62%), Query Frame = 1 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDDYAHGTH+QSFSSASLFPSSSRRDVYYSCGACGYELNLSS+NRNTSTIGSK
Sbjct: 1   MRQSPVFGDDYAHGTHVQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGN+IGNAHS
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

Query: 121 SHSSSTPLVSDGSD-SSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           +H++S+PLVSDGSD SSLPNEVS+CMKYEVKIRALQPSSSNEF  ++I
Sbjct: 121 NHTASSPLVSDGSDSSSLPNEVSRCMKYEVKIRALQPSSSNEFEPSII 168

[Close]
BLAST of Lsi04G023920 vs. TrEMBL
Match: A0A0L9UZL3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g185000 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-52
Identity = 103/138 (74.64%), Postives = 119/138 (86.23%), Query Frame = 1 

Query: 29  SSRRDVYYSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDESRFTQVDELQC 88
           SS+RDV YSCG CGYELNLSS NRNTS+IGSKYGKSIKRGIISF NID SRFTQVDE+QC
Sbjct: 22  SSQRDVRYSCGTCGYELNLSSSNRNTSSIGSKYGKSIKRGIISFFNIDLSRFTQVDEIQC 81

Query: 89  VPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSDGSDSSLPNEVSKCMKYE 148
           VPHF K+SWGLFRRR KLLCRKCGNHIGNA++ +++S PLVSDG++SS  ++V    KY+
Sbjct: 82  VPHFDKHSWGLFRRRTKLLCRKCGNHIGNAYNGYTTSFPLVSDGAESSPSSKVDSHTKYD 141

Query: 149 VKIRALQPSSSNEFGTTV 167
           ++IRALQPSSS   GT V
Sbjct: 142 IRIRALQPSSSEGTGTPV 159

[Close]
BLAST of Lsi04G023920 vs. TrEMBL
Match: A0A0S3RN53_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G197800 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-52
Identity = 103/138 (74.64%), Postives = 119/138 (86.23%), Query Frame = 1 

Query: 29  SSRRDVYYSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDESRFTQVDELQC 88
           SS+RDV YSCG CGYELNLSS NRNTS+IGSKYGKSIKRGIISF NID SRFTQVDE+QC
Sbjct: 22  SSQRDVRYSCGTCGYELNLSSSNRNTSSIGSKYGKSIKRGIISFFNIDLSRFTQVDEIQC 81

Query: 89  VPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSDGSDSSLPNEVSKCMKYE 148
           VPHF K+SWGLFRRR KLLCRKCGNHIGNA++ +++S PLVSDG++SS  ++V    KY+
Sbjct: 82  VPHFDKHSWGLFRRRTKLLCRKCGNHIGNAYNGYTTSFPLVSDGAESSPSSKVDSHTKYD 141

Query: 149 VKIRALQPSSSNEFGTTV 167
           ++IRALQPSSS   GT V
Sbjct: 142 IRIRALQPSSSEGTGTPV 159

[Close]
BLAST of Lsi04G023920 vs. TrEMBL
Match: V7B536_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G161200g PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.8e-52
Identity = 102/138 (73.91%), Postives = 118/138 (85.51%), Query Frame = 1 

Query: 29  SSRRDVYYSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDESRFTQVDELQC 88
           SS+RDV YSCG CGYELNLSS NRNTS+IGSKYGKSIKRGIISF NID SRFTQVDE+QC
Sbjct: 22  SSQRDVRYSCGTCGYELNLSSSNRNTSSIGSKYGKSIKRGIISFFNIDLSRFTQVDEIQC 81

Query: 89  VPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSDGSDSSLPNEVSKCMKYE 148
           VPHF K+SWGLFRRR KLLCRKC NHIGNAH+ +++S PLVSDG++SS  ++V+   KY+
Sbjct: 82  VPHFDKHSWGLFRRRTKLLCRKCSNHIGNAHNGYTTSFPLVSDGAESSPSSKVASHTKYD 141

Query: 149 VKIRALQPSSSNEFGTTV 167
           ++IR LQPSSS   GT V
Sbjct: 142 IRIRTLQPSSSERSGTLV 159

[Close]
BLAST of Lsi04G023920 vs. TrEMBL
Match: A0A067K9A9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12093 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.6e-52
Identity = 113/166 (68.07%), Postives = 127/166 (76.51%), Query Frame = 1 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           M +S    ++Y    H QSFSS+S    +S RDV YSCG CGYELNLSS NRNTSTIGSK
Sbjct: 1   MEKSAVAKENYLDWNHHQSFSSSS----ASLRDVSYSCGTCGYELNLSSSNRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISF NIDESRFTQ +E+QC+P+FSKNSWGLFRRR KLLCRKCGN IG A+ 
Sbjct: 61  YGKSIKRGIISFFNIDESRFTQTEEVQCIPYFSKNSWGLFRRRTKLLCRKCGNQIGIAYD 120

Query: 121 SHSSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTV 167
             + + P+VSDGSDSS  NE SK  KY+VKIRALQPSS    G  V
Sbjct: 121 DETLAYPIVSDGSDSSSVNE-SKRRKYDVKIRALQPSSLERSGNPV 161

[Close]
BLAST of Lsi04G023920 vs. TAIR10
Match: AT4G08330.1 (AT4G08330.1 unknown protein)

HSP 1 Score: 178.3 bits (451), Expect = 3.8e-45
Identity = 91/141 (64.54%), Postives = 107/141 (75.89%), Query Frame = 1 

Query: 19  SFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSKYGKSIKRGIISFLNIDES 78
           SFSS+S   SSS R V YSCG+CGYELNLSS NR TSTIGSKYGKS+K GIISF NIDE 
Sbjct: 23  SFSSSS--SSSSMRHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEG 82

Query: 79  RFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHSSHSSSTPLVSDGSDSSLP 138
           RF+QVDE QC+PHFS+ SWGLFR R KLLCRKC N+IGNA    +    LV+  SD + P
Sbjct: 83  RFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSP 142

Query: 139 NEVSKCMKYEVKIRALQPSSS 160
             +    KY+++IR+LQPSS+
Sbjct: 143 -RIGSVTKYDIRIRSLQPSSA 160

[Close]
BLAST of Lsi04G023920 vs. NCBI nr
Match: gi|659086871|ref|XP_008444153.1| (PREDICTED: uncharacterized protein At4g08330, chloroplastic [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 2.6e-83
Identity = 155/168 (92.26%), Postives = 164/168 (97.62%), Query Frame = 1 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSS+NRNTSTIGSK
Sbjct: 1   MRQSPVFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGN+IGNAHS
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

Query: 121 SHSSSTPLVSDGSD-SSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           +H++S+PLVSDGSD SSLPNEVS+CMKYEVKIRALQPSSSNEF  ++I
Sbjct: 121 NHTASSPLVSDGSDSSSLPNEVSRCMKYEVKIRALQPSSSNEFEPSII 168

[Close]
BLAST of Lsi04G023920 vs. NCBI nr
Match: gi|778694411|ref|XP_011653802.1| (PREDICTED: uncharacterized protein At4g08330, chloroplastic [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 3.3e-83
Identity = 154/168 (91.67%), Postives = 164/168 (97.62%), Query Frame = 1 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           MRQSP FGDDYAHGTH+QSFSSASLFPSSSRRDVYYSCGACGYELNLSS+NRNTSTIGSK
Sbjct: 1   MRQSPVFGDDYAHGTHVQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGN+IGNAHS
Sbjct: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAHS 120

Query: 121 SHSSSTPLVSDGSD-SSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
           +H++S+PLVSDGSD SSLPNEVS+CMKYEVKIRALQPSSSNEF  ++I
Sbjct: 121 NHTASSPLVSDGSDSSSLPNEVSRCMKYEVKIRALQPSSSNEFEPSII 168

[Close]
BLAST of Lsi04G023920 vs. NCBI nr
Match: gi|694444270|ref|XP_009348666.1| (PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 223.0 bits (567), Expect = 3.9e-55
Identity = 118/169 (69.82%), Postives = 133/169 (78.70%), Query Frame = 1 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGS- 60
           M +S  F   Y +G +  SFSS     SSSR DV YSCG+CGYELNLSS NRNTSTIGS 
Sbjct: 1   MEKSNIFRGSYLNGAYHPSFSS-----SSSRADVTYSCGSCGYELNLSSSNRNTSTIGSN 60

Query: 61  KYGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAH 120
           KYGKSIKRGIISF NIDESRFTQVDEL+C PHFSK SWGLF RR KLLCRKCGNHIGNA+
Sbjct: 61  KYGKSIKRGIISFFNIDESRFTQVDELKCKPHFSKRSWGLFSRRTKLLCRKCGNHIGNAY 120

Query: 121 SSH-SSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
             + SSS PLV D SDSS   EV+KC K++V+IRALQPS+S EFG +++
Sbjct: 121 DEYTSSSYPLVLDESDSSAGQEVTKCRKFDVRIRALQPSNSEEFGPSIL 164

[Close]
BLAST of Lsi04G023920 vs. NCBI nr
Match: gi|1009136767|ref|XP_015885701.1| (PREDICTED: uncharacterized protein At4g08330, chloroplastic isoform X1 [Ziziphus jujuba])

HSP 1 Score: 221.9 bits (564), Expect = 8.6e-55
Identity = 114/167 (68.26%), Postives = 129/167 (77.25%), Query Frame = 1 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGSK 60
           M +S    D Y +G H  S SS S+      RDV YSCG CGYELNLSS NRNTSTIGSK
Sbjct: 1   MEKSTFSKDGYLNGGHRPSLSSTSI------RDVSYSCGTCGYELNLSSSNRNTSTIGSK 60

Query: 61  YGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAHS 120
           YGKSIKRGIISF+ ID+SRFTQVDE+QC+PHFSK+SWGLFRRR KLLCRKCGN+IG A+ 
Sbjct: 61  YGKSIKRGIISFIYIDDSRFTQVDEIQCIPHFSKHSWGLFRRRTKLLCRKCGNNIGIAYD 120

Query: 121 SHSSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
            ++SS PLVSDGSDS   NEVSK  KY++KIR LQP SS E G  +I
Sbjct: 121 DYTSSYPLVSDGSDSCSGNEVSKRTKYDIKIRGLQPLSSEESGIPII 161

[Close]
BLAST of Lsi04G023920 vs. NCBI nr
Match: gi|658007199|ref|XP_008338775.1| (PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Malus domestica])

HSP 1 Score: 219.5 bits (558), Expect = 4.3e-54
Identity = 116/169 (68.64%), Postives = 133/169 (78.70%), Query Frame = 1 

Query: 1   MRQSPDFGDDYAHGTHIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSVNRNTSTIGS- 60
           M +S  +   Y +G +  +FSS      SSR DV YSCG+CGYELNLSS NRNTSTIGS 
Sbjct: 1   MEKSNIYRGSYTNGAYHPTFSS------SSRADVSYSCGSCGYELNLSSNNRNTSTIGSN 60

Query: 61  KYGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNHIGNAH 120
           KYGKSIKRGIISF NIDESRFTQVDEL+C PHFSK SWGLF RR KLLCRKCGNHIGNA+
Sbjct: 61  KYGKSIKRGIISFFNIDESRFTQVDELKCKPHFSKRSWGLFSRRTKLLCRKCGNHIGNAY 120

Query: 121 SSH-SSSTPLVSDGSDSSLPNEVSKCMKYEVKIRALQPSSSNEFGTTVI 168
             + SSS PLV DGSDSS  +EV+KC K++V+IRALQPS+S E GT+ +
Sbjct: 121 DEYTSSSYPLVLDGSDSSSGHEVTKCRKFDVRIRALQPSNSEECGTSFL 163

The following BLAST results are available for this feature:
BLAST of Lsi04G023920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y4833_ARATH6.8e-4464.54Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana GN=At4g... [more]
BLAST of Lsi04G023920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L375_CUCSA2.3e-8391.67Uncharacterized protein OS=Cucumis sativus GN=Csa_4G363480 PE=4 SV=1[more]
A0A0L9UZL3_PHAAN2.1e-5274.64Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g185000 PE=4 SV=1[more]
A0A0S3RN53_PHAAN2.1e-5274.64Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G197800 PE=... [more]
V7B536_PHAVU2.8e-5273.91Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G161200g PE=4 SV=1[more]
A0A067K9A9_JATCU3.6e-5268.07Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12093 PE=4 SV=1[more]
BLAST of Lsi04G023920 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G08330.13.8e-4564.54 unknown protein[more]
BLAST of Lsi04G023920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086871|ref|XP_008444153.1|2.6e-8392.26PREDICTED: uncharacterized protein At4g08330, chloroplastic [Cucumis melo][more]
gi|778694411|ref|XP_011653802.1|3.3e-8391.67PREDICTED: uncharacterized protein At4g08330, chloroplastic [Cucumis sativus][more]
gi|694444270|ref|XP_009348666.1|3.9e-5569.82PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Pyrus x bretsc... [more]
gi|1009136767|ref|XP_015885701.1|8.6e-5568.26PREDICTED: uncharacterized protein At4g08330, chloroplastic isoform X1 [Ziziphus... [more]
gi|658007199|ref|XP_008338775.1|4.3e-5468.64PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Malus domestic... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005886 plasma membrane
molecular_function GO:0033743 peptide-methionine (R)-S-oxide reductase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G023920.1Lsi04G023920.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33674FAMILY NOT NAMEDcoord: 1..167
score: 4.5
NoneNo IPR availablePANTHERPTHR33674:SF3SUBFAMILY NOT NAMEDcoord: 1..167
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G023920Csa4G363480Cucumber (Chinese Long) v2culsiB292
Lsi04G023920CSPI04G17840Wild cucumber (PI 183967)cpilsiB292
Lsi04G023920Cucsa.125490Cucumber (Gy14) v1cgylsiB192
Lsi04G023920CmaCh01G013960Cucurbita maxima (Rimu)cmalsiB428
Lsi04G023920CmaCh09G007950Cucurbita maxima (Rimu)cmalsiB027
Lsi04G023920CmoCh01G014480Cucurbita moschata (Rifu)cmolsiB417
Lsi04G023920CmoCh09G007870Cucurbita moschata (Rifu)cmolsiB015
Lsi04G023920Cla023167Watermelon (97103) v1lsiwmB334
Lsi04G023920MELO3C010478Melon (DHL92) v3.5.1lsimeB322
Lsi04G023920ClCG11G015750Watermelon (Charleston Gray)lsiwcgB260
Lsi04G023920MELO3C010478.2Melon (DHL92) v3.6.1lsimedB338
Lsi04G023920Bhi09G002243Wax gourdlsiwgoB393
Lsi04G023920Cp4.1LG06g06430Cucurbita pepo (Zucchini)cpelsiB641
Lsi04G023920CsGy4G016990Cucumber (Gy14) v2cgyblsiB270
Lsi04G023920Carg17027Silver-seed gourdcarlsiB152
Lsi04G023920Carg00345Silver-seed gourdcarlsiB607
Lsi04G023920CsaV3_4G028260Cucumber (Chinese Long) v3cuclsiB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G023920Watermelon (97103) v2lsiwmbB267
Lsi04G023920Watermelon (97103) v2lsiwmbB302
Lsi04G023920Bottle gourd (USVL1VR-Ls)lsilsiB146
Lsi04G023920Cucurbita maxima (Rimu)cmalsiB282
Lsi04G023920Cucurbita maxima (Rimu)cmalsiB431
Lsi04G023920Cucurbita maxima (Rimu)cmalsiB673
Lsi04G023920Cucurbita moschata (Rifu)cmolsiB271
Lsi04G023920Cucurbita moschata (Rifu)cmolsiB420
Lsi04G023920Cucurbita moschata (Rifu)cmolsiB664
Lsi04G023920Cucurbita pepo (Zucchini)cpelsiB147
Lsi04G023920Cucurbita pepo (Zucchini)cpelsiB356
Lsi04G023920Cucurbita pepo (Zucchini)cpelsiB455
Lsi04G023920Cucurbita pepo (Zucchini)cpelsiB466
Lsi04G023920Melon (DHL92) v3.5.1lsimeB307
Lsi04G023920Watermelon (Charleston Gray)lsiwcgB302
Lsi04G023920Watermelon (97103) v1lsiwmB292
Lsi04G023920Silver-seed gourdcarlsiB406
Lsi04G023920Silver-seed gourdcarlsiB609
Lsi04G023920Silver-seed gourdcarlsiB757