Lsi04G022680 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G022680
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionGEM-like protein 1
Locationchr04 : 29700977 .. 29705969 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAAACTACCAAGGTTGGCGCTCTCCGGTCACTGGATCGTCATCTCCGACTTCATCCTGGCTTTTACTCCGACCTCCGTTGGAGTTGCTGCTTCAGCACCGCCTCCTGAGTTCAATCCACATGTCTGTCCATCCAGCTCTACTTCCCGCGTCAAGCGCGAGTATACTCAAATCGCCTCTGAAACTGAATCTCCTCTAGGATTTAGCGTAATTTGGTGGTCATTTATGTTTCTTAACGGCTTGTTTACTATCACTGGATCCTAGGTTTTCTGATTGATAAAAAAAGACGGATTCATTCAGGAAGTGATTGAGATATGACGAAAGAAGGCGGCGGAGGCAATCAAGAAGAATTGAGGATCTCACGAGGAATATGTAATGTGTTCGCATTGCGAGTTCTTAATTTCTTGTTTGATTCTTAACGTACATTTTAGTGTATTGTTTTCCTGTTCTATCAATTACGTTACGAGGAGTAGCGTTGCGTGGAAATTTTCCATCTCGCGAAGCAGCATCGCGAAATACGTCTTCAAATATTTCTTTCGTTTGTTAATGTTACCGCTTATGGTCTATTTATGTATAATCCTTAATGATCTGAAAAAGTATGTAGTCCGAGTTAGCTGTGTTAGAACCACTACATTCATATTTTCTAACTCGTTCCACGATTATTTTCTTTTTCCATTTGTTTGGCTATTGAACGCAAGGCCTAGTGTTGCTAATGCTGCCGTGCGAAGAATTGCAGGAGAAGCCGAAGTTCTCACTAACGTTGGTTGCGAGAAAATGTTCCAGGAGTCGGGAGACTTACGAGAATGTATCAAAACAGCAGCTAATGATTGGCGTCTAAACGTCTGTTTACAGCTGCTAGCCAGTTATGCGAACACAATATCGTCATCTGCAAAACTTGCACTGTGTGGCGGTGATAAGCCTCTTCTGTATGAAGATGGCGAGCTTCGTATTCGAGGTTTTTGGAGGTATTTGATTTATTTTCTCATTGGTGTCTGAATTTATTGATTTTTTGTACTTTTCTCGCTGGTTTTTGTGCTTAATTTATTCATCAGTTCTCATTTTAGTATAGGAACCCTCCAAAATAGACTCGACTCGAGTGTGGTCTTTCATAAAACAGAACATGATAAAAAAAAAGGCTGAGCCGCAATCGGTTTCGAGATGTCCCTAAATATTATTATTAGGTAGGAGGAAGATTCTGAAATGAAAACTTACAAGTTTAAGGATATGGAAGTTTTCCTTTCTGTCAATTGGTATCTTTCACTTGACAGAAATCTTGAAATAAAGACGGTGGTTGTAACTTCTAACACTTTTTCAAGAAAATGATTGAGTGAAGACATCAAAATGCACGTGGTTTTGCTTATTCTTGTTGCTTTGCAATCAAAGCTACTATATAGTTCAACTTCGACTGTACGAAGTACATATTTTTACGTGCACTTGTCCGAAGATGCAGTAGTATATTTGTCACTTTGAAGGTGCCTTAAAATTAAAAAACTCAAAATGTTTTGAAGTCAAACATCCGAAATGCATCTAATTTGTGCTTTTGCAAGTGTCTTTGAGATGCTCAATGAGTTAATTATTAACTGAACTTTTTTCTTTTATTGGGCTTGGGAGTTGCAACTAATGTTTAGCATAATATTGCTCCATAGCCTGTAATACATCCACTCCTTCCCCCTCTCCTTTATCGCCTGACTTAGGCTACTTTTTCATAATGGAGAGAAATCACCCTTATTGGCATTATTACTTAAATATATAATAAAGCTTTTCTTGAGATTAAGCGCAGGTACAACATTTGTAGGAGTCAAGCAATGCAGTTTTTAGATGATGAGATGTTTAATGAATTGGTTATTACCAAATTTCATTGAGCACATGACTTAGCTACAGCATATTTCGGATACTATACAATAAACAACTACAGAAACTTGTCTAGATCTGAGCATATGACGTCTCTGCTAAGATCCAAATAGAAGTGATCTCTTATGAAGACTCAAGGGAGTTCTCTACTATGTCCTGCTTGGGTTGAAATATGGGATTTTTTATCATTGGTTAGAGGAACAATCTAAATTTCTTATTATCTGCATTAACTTTGGCCACGGATTTATGATTTCATTTTAATGTTGATAGGTAAGTACTCCAATAAATCCACTGAAGGCAGAGAGCCCATGAACTCAAGTAAAGATCAACCCCGCAGAGAAATACACAACTGGTTAATATCTGTGGTCCATGCATTCTGGTATATGGAGGGACTCTGATAGTGCTCTGAAAAAGTTTAAAGGAAGTTTTGCAGAAATTCAGTTCATGATGGGCATGGGTCAATTCCCACCGTCATAAATGAAATCAAATTACCATTATTGCCTAGTGGTTGGTTTTTAGCGAGGATGTTATATATTGTCAAGTATCTGGAAAGGTACAATAAGTATGCATATGGCATCTCTAATTCAGTTCATGATGAACATGGCTTAAAATTTTCAGCATCATAAATGGAAGGTGCCAGTGTTGTCTACCAGTTGATTATCGGTCAGGATTTTATGCTCTGTCAAGAGCACAGAAAGGTGCAATTTAAATTTGAGCAGCATGGTACATGAAATATCAAATTCTGTCTGTGATGAAGTTCGGTTAATATTTTTACCATCATGATGGAAATTACCAATGTTAACCAGCAGTTGATCATGGGTGAGGATGCTAAATAATGTCAAAATTCTTGCATTGAAGGATGCCATGGTTTGTGGAATCTCAAATTAATTTCTCTGTTGATTATTTGTGATTTACATTGTAGTTAATATACATGAGTCTAACAAACTACTAGATGATAAGCTAAGCTGTAATGTTTCTTTTAGACAGAATAAGCGAAGCTATCATGGATACCCATAATGTCAAAAATGCTAATCACAGGTGTATTATCATATACTTTTGCCAGGCAACTTGATATTTACATATGACTCTTGCTCTTTTTGTTTCATAACAAGGAAAGATGCTGAGTTGAAAGGCTTTGAAGTGTGACTAGTTTAGAAGATTCGTCAATTGCAATTCAGTAGGAAACACTAACATAAATAATTTAAAAAAGCTTATATTTTCCTTTTTGTTTTTTGTATGTTTTAGGGTCCCAGGCCAATGAAGCATTGTGCAGAATGGACGATTATACTGAAGTTATTGTCGCAATGCAAAGGGGAGTTGGAAGCATACTGAAAGTTAAGTATTAGTTTCCATTAGCACTTCTAATAGCATTAGCATTGTCTGAATCTCTGGAGCTTACAAAGATATATGTTTTACTTATTTTTTAAAAAAGGAGCTTACAAAGACAATTTGATTTATCAATTCGGACTAAATCAATAAAATTCAAATAATAAGCTTGAGATTGAATAAGATATGGGCCACCCATTGCGAATTACAAGAGTTTTATATCCCCTTTGAGCTTGGGCTTTAAGAGGCACTCTAGTAGTGCAAGTATGGTAGGACCCACTTAATGAGTGATGGTCGTTAGCGTTTGCATGCGTATAGTTGATTAAGTTAAAAAAATATTAGAAATATCCATTATTGTTATCTTAAAATATTACATCATACCAAAAAAATAATGGAAAAGTAGATTAGAATCTACAATATGTTTAACCAATAAAATTATGTCAAAGTCGGCATGTGGTTTTTATTGTTTTTATGTTCAGATTTGCGACGTTATTATCATTTTCTAAGTATAACATATCATTTTTAGTAGTTTTTAATGTTCGAGTATAGTTGATAATCATTTTGTTTCTATATTATCTACTTGTGAAAAGTAAAGTTATTTATTAAATTATTACTGAAGCAAATCCATTAATGTGAGTACTTTTTTAATAGATATTGGCTTCATCCAATATTAGAAGCTCCTTATGTATGTATTCATTTTTTTCATTAGATAAAGGCCCCATCTATATAACATGTTAAGGGTGCACCACACTATGCAGACATAGAAGAAGGGAAATGAATATCGTAAACTCTTTCTATTGGACATTGACACTTAAATCCTCAAAAATAGTTGACATAAGACTTGATTCAGTTTTTTCTTTCTTTCTTTCTTTTTCCAGTTTCAACTTCCAAGATTTTATTTTAGTTCCAGTTTCTCTATTATTGTGTTGTTTTATTTTACCAATTGTTAATTTTTTTAATATAATTATTTAACCAAAATTTAGATACATTTTAAAATTTAACATTTGTTCTCTTTAGTTGGATTTTTTTTTTTAAAATCATTTTTTAATATACTTATATACTTTTATATATATATATATATATATATATATATAAAATAATGAAAATAATGGATCGGAATAGAATGTTTAAAAGTTTAGAAGAAGTAAGATAAGAATTAAACGTAAATGATTAAGCTTAAATCACAAGTTGATTTATTATTATTATTATTTTGCAAAATTAGTTAACAAATATTTTTGACCCGATACTTGTATTTGATTAATAATTTAGTTCCGATATCTTAACATATAAACTACTTAATTTTTCAAATTTATAATAATTTTGTGAATTTTAGTATATAACAATTTAGTCTTTGTGCCAATCTTGAGGTAGAAGGTTTGATCACTATCTTTTCAACTTTGTGGTTTAATATTTACAACTATTTAAGTTCTACCATGTAAAATCATATTCAAAATTTAATGGGGTGTATTACTTATGTAGAGTTAAACGTATTTTTTTTTACAACAATTGTGGAGATGGGAGATCGAATCTCTGATGTCTGGAAAGGAAGACTATGTCAATTATAGTTGAACTAAGTTTAGTGGGCCAAATGTATATATGAACTACATAACTAAATTAAATAGTTTCTATTTCATTTTTTTGGTTTACACTTATTTTCAGGTATACCTCTGCCTTGGAAACAACATTGGAGGACTCCTTCCCGCTTTCGATTTGCAGGACCCAGTGGCTCACACTCTTGAATCTTGATCAAGGCGAATGTGTCATACGCACTGCCGTAAGTTGTTACTTGTTAGACGCAGGGCATGAAGATTGA

mRNA sequence

ATGTCCAAACTACCAAGGTTGGCGCTCTCCGGTCACTGGATCGTCATCTCCGACTTCATCCTGGCTTTTACTCCGACCTCCGTTGGAGTTGCTGCTTCAGCACCGCCTCCTGAGTTCAATCCACATGTCTGTCCATCCAGCTCTACTTCCCGCGTCAAGCGCGAGTATACTCAAATCGCCTCTGAAACTGAATCTCCTCTAGGATTTAGCGTAATTTGGTGGCCTAGTGTTGCTAATGCTGCCGTGCGAAGAATTGCAGGAGAAGCCGAAGTTCTCACTAACGTTGGTTGCGAGAAAATGTTCCAGGAGTCGGGAGACTTACGAGAATGTATCAAAACAGCAGCTAATGATTGGCGTCTAAACGTCTGTTTACAGCTGCTAGCCAGTTATGCGAACACAATATCGTCATCTGCAAAACTTGCACTGTGTGGCGGTGATAAGCCTCTTCTGTATGAAGATGGCGAGCTTCGTATTCGAGGTTTTTGGAGCATCATAAATGGAAGGTGCCAGTGTTGTCTACCAGTTGATTATCGGTCAGGATTTTATGCTCTGTCAAGAGCACAGAAAGGGTCCCAGGCCAATGAAGCATTGTGCAGAATGGACGATTATACTGAAGTTATTGTCGCAATGCAAAGGGGAGTTGGAAGCATACTGAAAGTTAAGTATACCTCTGCCTTGGAAACAACATTGGAGGACTCCTTCCCGCTTTCGATTTGCAGGACCCAGTGGCTCACACTCTTGAATCTTGATCAAGGCGAATGTGTCATACGCACTGCCGTAAGTTGTTACTTGTTAGACGCAGGGCATGAAGATTGA

Coding sequence (CDS)

ATGTCCAAACTACCAAGGTTGGCGCTCTCCGGTCACTGGATCGTCATCTCCGACTTCATCCTGGCTTTTACTCCGACCTCCGTTGGAGTTGCTGCTTCAGCACCGCCTCCTGAGTTCAATCCACATGTCTGTCCATCCAGCTCTACTTCCCGCGTCAAGCGCGAGTATACTCAAATCGCCTCTGAAACTGAATCTCCTCTAGGATTTAGCGTAATTTGGTGGCCTAGTGTTGCTAATGCTGCCGTGCGAAGAATTGCAGGAGAAGCCGAAGTTCTCACTAACGTTGGTTGCGAGAAAATGTTCCAGGAGTCGGGAGACTTACGAGAATGTATCAAAACAGCAGCTAATGATTGGCGTCTAAACGTCTGTTTACAGCTGCTAGCCAGTTATGCGAACACAATATCGTCATCTGCAAAACTTGCACTGTGTGGCGGTGATAAGCCTCTTCTGTATGAAGATGGCGAGCTTCGTATTCGAGGTTTTTGGAGCATCATAAATGGAAGGTGCCAGTGTTGTCTACCAGTTGATTATCGGTCAGGATTTTATGCTCTGTCAAGAGCACAGAAAGGGTCCCAGGCCAATGAAGCATTGTGCAGAATGGACGATTATACTGAAGTTATTGTCGCAATGCAAAGGGGAGTTGGAAGCATACTGAAAGTTAAGTATACCTCTGCCTTGGAAACAACATTGGAGGACTCCTTCCCGCTTTCGATTTGCAGGACCCAGTGGCTCACACTCTTGAATCTTGATCAAGGCGAATGTGTCATACGCACTGCCGTAAGTTGTTACTTGTTAGACGCAGGGCATGAAGATTGA

Protein sequence

MSKLPRLALSGHWIVISDFILAFTPTSVGVAASAPPPEFNPHVCPSSSTSRVKREYTQIASETESPLGFSVIWWPSVANAAVRRIAGEAEVLTNVGCEKMFQESGDLRECIKTAANDWRLNVCLQLLASYANTISSSAKLALCGGDKPLLYEDGELRIRGFWSIINGRCQCCLPVDYRSGFYALSRAQKGSQANEALCRMDDYTEVIVAMQRGVGSILKVKYTSALETTLEDSFPLSICRTQWLTLLNLDQGECVIRTAVSCYLLDAGHED
Homology
[Close]
BLAST of Lsi04G022680 vs. TAIR10
Match: AT1G28200.1 (AT1G28200.1 FH interacting protein 1)

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-07
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = 1 

Query: 25  PTSVGVAASAPPPEFNPHVCPS-------SSTSRVKREYTQIASE-TESPLGFSVIWW-- 84
           P   G AA+  P E NP+V PS        S      ++ ++A++ T+     +  +W  
Sbjct: 50  PIPTGAAATTMPAESNPYVSPSPAPRNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQH 109

Query: 85  ----PSVANAAVRRIAGEAEVLTNVGCEKMFQESGDLRECIKTAANDWRLNVCLQLLASY 144
               PSVA+AAV RIA   ++L   G EK+F+++ D   C+             +LL +Y
Sbjct: 110 LKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFD---CLPDE----------KLLKTY 169

Query: 145 ANTISSSA------------KLALCGGDKPLLYEDGELRIRGFWSII 166
           A  +S+SA            KLA    D PL Y++GE  +  ++ ++
Sbjct: 170 ACYLSTSAGPVLGVMYLSTHKLAF-SSDNPLSYKEGEQTLWSYYKVV 202

The following BLAST results are available for this feature:
BLAST of Lsi04G022680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G022680 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi04G022680 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G28200.18.8e-0728.74 FH interacting protein 1[more]
BLAST of Lsi04G022680 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G022680.1Lsi04G022680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G022680Carg02997Silver-seed gourdcarlsiB575
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G022680Silver-seed gourdcarlsiB054
Lsi04G022680Silver-seed gourdcarlsiB366
Lsi04G022680Silver-seed gourdcarlsiB525
Lsi04G022680Cucumber (Chinese Long) v3cuclsiB132
Lsi04G022680Cucumber (Chinese Long) v3cuclsiB208
Lsi04G022680Cucumber (Chinese Long) v3cuclsiB485
Lsi04G022680Watermelon (97103) v2lsiwmbB259
Lsi04G022680Watermelon (97103) v2lsiwmbB267
Lsi04G022680Watermelon (97103) v2lsiwmbB309
Lsi04G022680Wax gourdlsiwgoB393
Lsi04G022680Bottle gourd (USVL1VR-Ls)lsilsiB075
Lsi04G022680Bottle gourd (USVL1VR-Ls)lsilsiB154
Lsi04G022680Cucumber (Gy14) v1cgylsiB127
Lsi04G022680Cucumber (Gy14) v1cgylsiB503
Lsi04G022680Cucurbita maxima (Rimu)cmalsiB022
Lsi04G022680Cucurbita maxima (Rimu)cmalsiB169
Lsi04G022680Cucurbita maxima (Rimu)cmalsiB425
Lsi04G022680Cucurbita maxima (Rimu)cmalsiB614
Lsi04G022680Cucurbita maxima (Rimu)cmalsiB728
Lsi04G022680Cucurbita moschata (Rifu)cmolsiB010
Lsi04G022680Cucurbita moschata (Rifu)cmolsiB159
Lsi04G022680Cucurbita moschata (Rifu)cmolsiB413
Lsi04G022680Cucurbita moschata (Rifu)cmolsiB602
Lsi04G022680Cucurbita moschata (Rifu)cmolsiB718
Lsi04G022680Cucurbita pepo (Zucchini)cpelsiB088
Lsi04G022680Cucurbita pepo (Zucchini)cpelsiB463
Lsi04G022680Cucurbita pepo (Zucchini)cpelsiB636
Lsi04G022680Cucurbita pepo (Zucchini)cpelsiB671
Lsi04G022680Wild cucumber (PI 183967)cpilsiB189
Lsi04G022680Wild cucumber (PI 183967)cpilsiB462
Lsi04G022680Cucumber (Chinese Long) v2culsiB191
Lsi04G022680Cucumber (Chinese Long) v2culsiB455
Lsi04G022680Melon (DHL92) v3.5.1lsimeB310
Lsi04G022680Melon (DHL92) v3.5.1lsimeB334
Lsi04G022680Watermelon (Charleston Gray)lsiwcgB260
Lsi04G022680Watermelon (Charleston Gray)lsiwcgB272
Lsi04G022680Watermelon (97103) v1lsiwmB325
Lsi04G022680Watermelon (97103) v1lsiwmB334
Lsi04G022680Cucumber (Gy14) v2cgyblsiB112
Lsi04G022680Cucumber (Gy14) v2cgyblsiB175
Lsi04G022680Cucumber (Gy14) v2cgyblsiB423
Lsi04G022680Melon (DHL92) v3.6.1lsimedB324
Lsi04G022680Melon (DHL92) v3.6.1lsimedB350