Lsi04G021660 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G021660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr04 : 28718203 .. 28721410 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACATTCGAAACTCCACGGTATCGCTTTCGTTCATTGAGAAACGCGCGTTGCGAAGCCTCTGGAAACCGCACCCTCGCCGTTGCTATAAATACCGATCCGATTCTAACTGTACCTCACACATTCAGATTCTTGTCTTTCTCTTGGTTTTTTCCCTCTCAAATTCAGCGATTTTCTCAGCTGTTCAGAGCTCCGATTTTTGAGTTAGGTCTCGTTTTGGGATTCGGGTTCGCCGCCGCAAGCTTGCGTGTCCACTGACTGAACGAAGTTCGTTATTCTATTAAGAAAGTTTTCTGTAGTTCGTAATTCTTGTTTTTGATCATCTTTTGGTGGTATGGTTAGATCATAGTTTGGTTTTGTTTTCTTTTCTTAGGCAATGTGATGTGCATTTGCCTCTGATTTGAATTTTATTGTTCGGTTTCTTTGACATTTTTATTTCGGAATAGATAGAGATTTGGGATCTTATACCTTCTGGTTTAGTTCAACTTGTTGTCAGTGGTTCTCGATTGTGTTCTTGTTCCCTCTGCAACTACAATTGTGGAGGTATATGGTCCCAAATTTTCTATGTTTCTTTTTCCCTTGCGATTATTGAAGTCGAAATTCTCGTTGCAAGTTTTCTTTCCGGGGCGTTCTATTTATTGGTCTGGGCGATGTTCGTTCCCTAGGATTGTCTTAGATTTCTCTCGCAGTACTAGAAATTGTTAAACTTGATTGATTGAGCGGTGTTTTGATTTGATTGATGCATCTTGGTATGATGAAGGTTTTGTATGTCTAGGATACATTTTGGTTGTGTGTTGAAATGCTTGTAGGTTAGGGTTTTGTTTATAGAACTAAGAGCTAGATAGATGTTTGTAAAAATTCCGGCCTCCTGCATTATTGAAGACTTTGACGACCGTTTTTAAATTGTTGAACGGACTAACGCTCATGAATGAATGTTATATTCTTGATCATAATTTTGAGGCCTTGAACTCGTCTTCCATTTGAAGTATTATCTTTAAGATGCTTATCTCCTTAGTTAGGAGATCGTATCCATTCTGAGGCCTTTATTAGTTTCCCCCTCGGCTCCTCAACCTAAAAACAAAAGACACGTTTCTTAAAGCTTACTGCTACGTAGTATGATATTGATGGAAGCTGTTCCTAGGATGTTGAATTTCAACCGAAGTGGATTGTTGCATGATTTGATGAGTGGGAATGTGTATACGAACCCCCCCTTCCCCATGCGCTGCTTGCAAACGTGAGTGAAGCCAGGAACAAAACACTGTGTGGTTAAGTTAGATCAAAGAAATTTTAGTTTCAGTGGTGACATTTTAACATTGACCCTGCTATTGGTGCTTAACACGAAAATGGTGGTTTTTTGTTTGATAATTGAACAGAATCATGGGGTCTACTACTTGAGTACACAAGATGATGTCCAAAACGAAGCAACAAGTTGTGGTTTTTTCTATTTGGATGTTCTTTACCAAATTATTTGGATCTCTCTTAACTTGGTCGCTGGTGATACCTTGTGAGAACCCTAGCCACCTTCATAGTACTGGATATCATTGCCGGGCTTGAGATATAAGTTAACCTAGAATCATTTTATTTATTTATTTTTAGTTAAAAAAAATTAATTATGAGGAGCAGTAGGGAGCTGATGGTAGCCATATCAACGTACTTAAGCTTTTTGCTTCAGCTTGGAAGATTTATTATGAATAATCACAAATGAAGTTTAGATAGATGCTTCTGGGTGGTGTTGGATGTTGGATTCTTGTCTGCGACCCTTTTCTAAATCTGGAGTATTGACAGTTTATTTGGAGTTCTGGACATGTTTTTGCTTCTTCAACGTGTTCCCGATGAAGTCTTGATTATCCTCTCAGTGACCATAAGAATTCTAGGTGTCTCTCTGATACCGAGATTGCAAGAGCTGTAGGTGCAGTTATGGGGTTATGTTTAGTTGACTGGATACCCTTGGGTACATAACCTATTCCTCCAATTGTAAGATCAGCGATGGAGATTGTGCCATTCACCCTAGAAGCTAATCTCATTTTATCATTTTCCTTCTCTCTCCAATGAACCTTTTGCTTCCTCTTGCACCTTGCTCTCTGGAACAAGTTTCATTATGCAGTTGCTGGCCATGACCGCCTTCAAGAAGAGTTGAAAAATCCTTTTTGCTAATCTGGAAAAATGGTTTTCTTTTTGGTTGTTTGGTTCTCAGTACTATGGAAATGAAGGAACCGGATGAATGCAAAGATACCATTTGATGAAGGAAAATTTATTGGCTTCCAGAGAGAATAATAGATGGGTAAGTTGGGTTCTTGGAGGAAACTGAATGCGGAGATTCAATTTGAGGTAGGCTTGTTCTTTTGGACAATTAAGCCAGTAGAACTATTAAATATTTTGCCTTTTTTTTTGTTATTTGTGGAACACATTTGATTGGGTATGTGTTGCTTTTACAATAGGTTGATGCATCCAATGTTTGACCCAGTTTAGTGGGAATTGAATCCGGAGTCTTCAACAAATCAAGTGATCATGATGTGCAATTGGTCACTATTCAAAGCTGGAGGCTCTGGAGTCCCCCAGTGCTGCGTTGTAGTTATTATATGGTCTCCTATAACTCTTCTTTTTTGGATGAACTGAACTCTCCTCGTGGAGTTATGATGATTGGAGCTGTACAACATTTCTTGGATAATTTGTTGCTGATGTGCTGTGGTCTGCAGCTGTATAGAAGAAAGCAACAGTGTCATGGCCTGTTTGACGGTGAATAACATGCCTTTTCTGGCTTTAGGATGATTGCTAAAGTCCTTCCTATATGCAGGTGCTTTAAGCTTCTATCCAGATTCAACCATTGTCCTGCATTGGAGGATATTATTTTCCATGGCAGAGGTTGCAACTTACTCCAAGCCTCAACAAATTGGGACAGAGGAAAATCAACATATGACATGCAGAGGAAAGGAGATAAGAACTGTGTACACTGAGCAGTTTGATTCTCAGGCCTTGCCCTTTGAAAAATCAAATGATCCCCAAGAGTTGTTGGAGAGGGAATACATGCAACATGGGTAAAGTCCTTGAGAGTTATTTTTCTAACCCTGTTTCAGGTCTTTCTTATTCATTTGCTAAACACAGAACTTGTCATTTTGCAGATGTGCACATTATAGGCGAAGGTGCCGTATCAGAGCTCCCTGTTGTAATGAAATCTTTGATTGCCGGCATTGCCATAATGAAATAA

mRNA sequence

ATGGCGACATTCGAAACTCCACGGTATCGCTTTCGTTCATTGAGAAACGCGCGTTGCGAAGCCTCTGGAAACCGCACCCTCGCCGTTGCTATAAATACCGATCCGATTCTAACTGTACCTCACACATTCAGATTCTTGTCTTTCTCTTGGTTTTTTCCCTCTCAAATTCAGCGATTTTCTCAGCTGTTCAGAGCTCCGATTTTTGAGTTAGTGGTTCTCGATTGTGTTCTTGTTCCCTCTGCAACTACAATTGTGGAGAATCATGGGGTCTACTACTTGAGTACACAAGATGATGTCCAAAACGAAGCAACAAGTTGTGGTTTTTTCTATTTGGATGTTCTTTACCAAATTATTTGGATCTCTCTTAACTTGGTCGCTGGTGATACCTTTTTAGTGGGAATTGAATCCGGAGTCTTCAACAAATCAAGTGATCATGATGTGCAATTGGTCACTATTCAAAGCTGGAGGCTCTGGAGTCCCCCAGTGCTGCGTTGTAGTTATTATATGGTCTCCTATAACTCTTCTTTTTTGGATGAACTGAACTCTCCTCGTGGAGTTATGATGATTGGAGCTGTACAACATTTCTTGGATAATTTGTTGCTGATGTGCTGTGGTGCTTTAAGCTTCTATCCAGATTCAACCATTGTCCTGCATTGGAGGATATTATTTTCCATGGCAGAGGTTGCAACTTACTCCAAGCCTCAACAAATTGGGACAGAGGAAAATCAACATATGACATGCAGAGGAAAGGAGATAAGAACTGTGTACACTGAGCAGTTTGATTCTCAGGCCTTGCCCTTTGAAAAATCAAATGATCCCCAAGAGTTGTTGGAGAGGGAATACATGCAACATGGAACTTGTCATTTTGCAGATGTGCACATTATAGGCGAAGGTGCCGTATCAGAGCTCCCTGTTGTAATGAAATCTTTGATTGCCGGCATTGCCATAATGAAATAA

Coding sequence (CDS)

ATGGCGACATTCGAAACTCCACGGTATCGCTTTCGTTCATTGAGAAACGCGCGTTGCGAAGCCTCTGGAAACCGCACCCTCGCCGTTGCTATAAATACCGATCCGATTCTAACTGTACCTCACACATTCAGATTCTTGTCTTTCTCTTGGTTTTTTCCCTCTCAAATTCAGCGATTTTCTCAGCTGTTCAGAGCTCCGATTTTTGAGTTAGTGGTTCTCGATTGTGTTCTTGTTCCCTCTGCAACTACAATTGTGGAGAATCATGGGGTCTACTACTTGAGTACACAAGATGATGTCCAAAACGAAGCAACAAGTTGTGGTTTTTTCTATTTGGATGTTCTTTACCAAATTATTTGGATCTCTCTTAACTTGGTCGCTGGTGATACCTTTTTAGTGGGAATTGAATCCGGAGTCTTCAACAAATCAAGTGATCATGATGTGCAATTGGTCACTATTCAAAGCTGGAGGCTCTGGAGTCCCCCAGTGCTGCGTTGTAGTTATTATATGGTCTCCTATAACTCTTCTTTTTTGGATGAACTGAACTCTCCTCGTGGAGTTATGATGATTGGAGCTGTACAACATTTCTTGGATAATTTGTTGCTGATGTGCTGTGGTGCTTTAAGCTTCTATCCAGATTCAACCATTGTCCTGCATTGGAGGATATTATTTTCCATGGCAGAGGTTGCAACTTACTCCAAGCCTCAACAAATTGGGACAGAGGAAAATCAACATATGACATGCAGAGGAAAGGAGATAAGAACTGTGTACACTGAGCAGTTTGATTCTCAGGCCTTGCCCTTTGAAAAATCAAATGATCCCCAAGAGTTGTTGGAGAGGGAATACATGCAACATGGAACTTGTCATTTTGCAGATGTGCACATTATAGGCGAAGGTGCCGTATCAGAGCTCCCTGTTGTAATGAAATCTTTGATTGCCGGCATTGCCATAATGAAATAA

Protein sequence

MATFETPRYRFRSLRNARCEASGNRTLAVAINTDPILTVPHTFRFLSFSWFFPSQIQRFSQLFRAPIFELVVLDCVLVPSATTIVENHGVYYLSTQDDVQNEATSCGFFYLDVLYQIIWISLNLVAGDTFLVGIESGVFNKSSDHDVQLVTIQSWRLWSPPVLRCSYYMVSYNSSFLDELNSPRGVMMIGAVQHFLDNLLLMCCGALSFYPDSTIVLHWRILFSMAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQHGTCHFADVHIIGEGAVSELPVVMKSLIAGIAIMK

Homology

[Close]

BLAST of Lsi04G021660 vs. TrEMBL
Match: A0A0A0LHD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G880030 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 225 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 284
           MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQ++LEREYMQH
Sbjct: 1   MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSPALPFEKSNDPQKVLEREYMQH 60

Query: 285 GTCHF 290
           G  H+
Sbjct: 61  GCAHY 65

[Close]

BLAST of Lsi04G021660 vs. NCBI nr
Match: gi|659132733|ref|XP_008466355.1| (PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 7.2e-26
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 225 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 284
           MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQE+LEREYMQH
Sbjct: 1   MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSLALPFEKSNDPQEVLEREYMQH 60

Query: 285 GTCHF 290
           G  H+
Sbjct: 61  GCAHY 65

[Close]

BLAST of Lsi04G021660 vs. NCBI nr
Match: gi|659132731|ref|XP_008466354.1| (PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 7.2e-26
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 225 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 284
           MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQE+LEREYMQH
Sbjct: 1   MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSLALPFEKSNDPQEVLEREYMQH 60

Query: 285 GTCHF 290
           G  H+
Sbjct: 61  GCAHY 65

[Close]

BLAST of Lsi04G021660 vs. NCBI nr
Match: gi|449437104|ref|XP_004136332.1| (PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-25
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 225 MAEVATYSKPQQIGTEENQHMTCRGKEIRTVYTEQFDSQALPFEKSNDPQELLEREYMQH 284
           MAEVATYSKPQ IGTEENQHMTCRGKEIRTVYTEQFDS ALPFEKSNDPQ++LEREYMQH
Sbjct: 1   MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSPALPFEKSNDPQKVLEREYMQH 60

Query: 285 GTCHF 290
           G  H+
Sbjct: 61  GCAHY 65

The following BLAST results are available for this feature:

BLAST of Lsi04G021660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G021660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHD3_CUCSA	1.1e-25	89.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G880030 PE=4 SV=1	[more]

BLAST of Lsi04G021660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi04G021660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132733\|ref\|XP_008466355.1\|	7.2e-26	90.77	PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X...	[more]
gi\|659132731\|ref\|XP_008466354.1\|	7.2e-26	90.77	PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X...	[more]
gi\|449437104\|ref\|XP_004136332.1\|	1.6e-25	89.23	PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Cucumis ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G021660.1	Lsi04G021660.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G021660	CmaCh09G004910	Cucurbita maxima (Rimu)	cmalsiB022
Lsi04G021660	Cla020937	Watermelon (97103) v1	lsiwmB313
Lsi04G021660	MELO3C003660.2	Melon (DHL92) v3.6.1	lsimedB324
Lsi04G021660	Cla97C05G098460	Watermelon (97103) v2	lsiwmbB285
Lsi04G021660	Bhi09G001965	Wax gourd	lsiwgoB393
Lsi04G021660	Cp4.1LG06g03640	Cucurbita pepo (Zucchini)	cpelsiB636
Lsi04G021660	CsGy3G041810	Cucumber (Gy14) v2	cgyblsiB175
Lsi04G021660	Carg02909	Silver-seed gourd	carlsiB575
Lsi04G021660	CsaV3_3G046770	Cucumber (Chinese Long) v3	cuclsiB208

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G021660	Bottle gourd (USVL1VR-Ls)	lsilsiB153
Lsi04G021660	Cucumber (Gy14) v1	cgylsiB264
Lsi04G021660	Cucumber (Gy14) v1	cgylsiB503
Lsi04G021660	Cucurbita maxima (Rimu)	cmalsiB176
Lsi04G021660	Cucurbita maxima (Rimu)	cmalsiB425
Lsi04G021660	Cucurbita moschata (Rifu)	cmolsiB010
Lsi04G021660	Cucurbita moschata (Rifu)	cmolsiB164
Lsi04G021660	Cucurbita moschata (Rifu)	cmolsiB413
Lsi04G021660	Cucurbita pepo (Zucchini)	cpelsiB463
Lsi04G021660	Wild cucumber (PI 183967)	cpilsiB189
Lsi04G021660	Wild cucumber (PI 183967)	cpilsiB120
Lsi04G021660	Cucumber (Chinese Long) v2	culsiB123
Lsi04G021660	Cucumber (Chinese Long) v2	culsiB191
Lsi04G021660	Melon (DHL92) v3.5.1	lsimeB298
Lsi04G021660	Melon (DHL92) v3.5.1	lsimeB310
Lsi04G021660	Watermelon (Charleston Gray)	lsiwcgB284
Lsi04G021660	Watermelon (Charleston Gray)	lsiwcgB306
Lsi04G021660	Watermelon (97103) v1	lsiwmB294
Lsi04G021660	Silver-seed gourd	carlsiB606