Lsi04G021650 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G021650
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr04 : 28706038 .. 28709723 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCAAGTGCTGGTTTTGTGCATCAAATTCTGGTATTGTGTATTTTAAGTGCCATTTTATATATTTGATTACTGATCCAGCAATTTTCGATGCAAAATTTGTATCAGTTTCTTTGTTTAATAATTATTTGTCTAACTTAGTAAGATTAACTATAATAACTTTATTGTCCTGCCTGGCATGGGCAAGTAGAGAAGGCTTAGCTGTAATGTGAGTTCTACGTTTTGCTAAGGATCTGAGAGTTTTAGAAGGATGAAATACAGCTGATAGGGTATTAAGGATGATCACTTTGTTGATGAGGTGAGGAAACGTAGAGAGGCAATCGACAACTTTTCTCTATGAATTAGTGGTAGACATATATCATGTTGCCATTATGAAATTCCCGTCTAAATTTTAGAGGCCCACATTTGGTTTTGCATTAAATCTGTCTCACTTTTGAAAACCTTGACTGTAGCTTTGGCAAATGCTTTGAAATTCTTGCTCTGGAGCATTTAAGAATTCCCAATGGGGGAGGCAATAAAATGATGGGAAGTGCTTGAGTTAGCTAAATTTTATGTATATTAATGTATTGTGTTTAGAAACTCCTTCGGAGTGTCCTTGTATGTAATATTCAGTTATTTGGACTTCTCAACGAAAAACCTCACGTACCTATAGCTGGAGTTTTGGTTGTAATAAATAATATCCTAACCTTGACCAATTACTTGTAATACTTTTTCAGACTTTCTGTATCTTTTGTTTGTTAAAATATGTCATGCCATTATCAATTGCTTTTTTATAGTTAAGGGGAAGCTGGCAAAGTCAATCTTTGGAAGGCTTCCAAATTGAAGCAGCTTGATAGTTACCCGATAATTGCTCCTCATTTGCTCGCATGACTGGTTTGAGAAATAGATTTGAACAGAACTTCTAAAGAACATATTTGTGACAAAAAATCAGACCATGGGAAAGAGAGGAATGGTAGTATAGTCCTTGTCGACTTCAAGACTAATCCTAGCCCTTTTTCAATTCTACGCGGTGTAAGTCTCCCAGTCCCATCTTTAATTATCTACTGAAAACTTGAATAACCAGCACTTGGAGAAAAAGAATAGGAACAGAAAGTAAAGACAAGAAAAGAAAACAACCACCCTCCTCCAAATAAGAGAAAACCCCTTGAAAAATCTTTTTTACTACATCTTTTTTCATGGTTTCAACTTCTGAACTAACACATGGGCAACATCCCTCCGCCCATGGGGGTGCTATAGATGCTGAAAGCTGGAAAGTCTTGCGAGGAAAAGAAAAAAAAATGATACTTCAATAGAGTTAATGGTAGAAGGAAAACAGGCCGCAAGTGATTTACAAGGCCGCAAGTGATTTACAAGGCCGCAAGTGATTTACAAGAAATTGTAATCTACAGGCCTGAACAAATACTGCTTTGACTTAGCTCACAAACAATTCCTGCTGTTATCTACTGGCCAAACCCCGATATGCTATCGGCTCGCCCAGTGAAAAGTTTGTACTGTAAACTAAATTTCTGCAGCTTGAGAAGCTTGCAGACAGTGACAGCTTATTGTGTGCCACAGTGAGCTATTTCAACCTCAGCATCTTCCCAATCAACATGGGAACTGATCGCCGAGATTATAAAGAAAAGCTTGCATCAAATACTATTGTTCATTGCGATTACTTCATTCTGTGTACTTGACATGTTGCCAAAACTTGATGGTAAAACATCCATAAAACTTTTTGGCAAGAACAATCACAGAAACTGGTGAGTTTTTCACATTATCAGGCTGTACGAAGGCAACTTGATTATGGTTGATAAAACTGGTAATCGAGATCTTTGTCAAGAAAGAGGTTAGCGTACTCACCTTCAAACTTATTGAACTGAAGACCAAGATATTTATGACTTGGAAAATTATGAATTTCCCTGCAAACCGGTTGTTACTGATTTTAAGCACAAGAGGAAGAACATACATTTTTGGAAACTGCTTCTTAGAACTTGATTGTAAAAACTGTTTTGAAATTGTGGAAAATGGCAGTATTAGATAGAAGGTGTAGTAATTCAGGAAGGTATACAGCAATGTTTCCATTGAGCTGCTTTGAGATAATGGCAGTATCTAATAGAAGGTGTAGCTCTTCAAGAGCTTTGGAGCAAAACACACTACGCAGTTATGTTTGGCTTTGCTTCCAAGCTTGAAGGGCAAGTACTCAGCCTATAAACCTGCAAGCTCGCATTGTTTATGAAGGATAATTTTTGAGCTATGATGAGGCAAACAAGTGTGAGACTGGTGGTAATGAGAATGGTAAAAAGAAGAATTCATTTCATATCACAATTGAGAAAATATGCCTGAAATTTTTATGCTGGAAGAATGAAAAGAATTTACAAGTGGCTTCTTACCTAGGGAGAGGAAAAATGTGGTAAGATTTGGGGAGAAATACCTTTTTTTTCCTCTCTAGATTTTGGATATAGTTTTCCTTTAGTCCATAGATTTTAAAATATTACACATTTAGTTTTCAAGTATTAAGTTTGGTCTTAATCTAGTCCTAAGTTTCAAAATGTTATAATTTTACGTTTGAGATTTGCGTTTTATTTCAATTTGGTCTCTAAATGTTAAAAGTATAGATCTTGAAACTTAGAGACCAAATTGAAACAAAAATCAAATCTTTAAGGTAAAATTGTAATATTTTGAAACCTATGAACTAAATTGAAACCAAACTCAAAACCTAAAGACCAAGGTCTTGTTTGGTAAGTATTTGGTTTTTTATTTTTAGTTTTTGAAAATTAAGCCTACTAGCACTCCTCTCACCCATAAATGTCTTTCTTTCTTATTTATTTTTTATCCATATTTTTAAAAACCATGTCAAATTTTAAAAGTAGTTTTTAAAAAAATTGTTTTTGTTTTTGAGATTTGGCTAAAAATTCAACACTTATATTAAAAAAGGTACAAATCATTGTAAGAAAACATGAGAAAACATACTTGATTTTCAAAAACAAAAAACGAAATTGTTATTAAATAGGGTCTAAATGTATAACATTTTAAAATTTAGGGACAAAATAGAATAAAAACTTACACTCGAAGGTATTTTCCTTCATATTTATGAAGCTGAAAAAACCAAAGTGGGGCACTGAAGTTAGCTTTTTGGAAAGCATGAAGAAATAGTTCAAAGATCCATCTATGGTGGCCACCTACCTAGAATTTAATATCCTACGAGTAAGTTGGCAGCCTGTCTGTTGTAGGGTCGGGTGGATTGTTCCGTGAGATTAGTCGAGGTGCGCGTAAGTTGGCTCGGACACTCACGGATATAAAAAAAAAAAAAATAGTTCAAAGATTTATGTAGTTAAATTAAACCTCACCTAATTTATATCAAATATAGCCTACTGGACCCAAAATTTCTTTCTGACTGGAACTTGAAAAATGTATATTCTATGCATCAATATTGCTCCAGATCTTATTTTTCTTCTGATTAAAGCCAAACCTCTAGATTTTGATATTGAAAAGTGAGACTTAAGGTATGATTAAGGGTTCAGTCAAAGTTACTGCTGTCACTTAAAGTTTCATTCTTCCGGTATATGTGGCAGTCTCAAATTTTGCAGGGCACTACGGATCGTGAGGGAAACGCATTGCACTGTGGGGGCTACCATTTCTAAGTACATGGCAGTTAAAATGACGCTGGATGTTAATGCATCCACGTTTCACTGTGCCAACTTCTTA

mRNA sequence

ATGGTCCAAAAACTCCTTCGGAGTGTCCTTGTATGTAATATTCAGTTATTTGGACTTCTCAACGAAAAACCTCACGTACCTATAGCTGGAGTTTTGGTTAAGGAAAACAGGCCGCAAGTGATTTACAAGGCCGCAAGTGATTTACAAGGCCGCAACTCACAAACAATTCCTGCTGTTATCTACTGGCCAAACCCCGATATGCTATCGGCTCGCCCACTTGAGAAGCTTGCAGACAGTGACAGCTTATTGTGTGCCACAGTGAGCTATTTCAACCTCAGCATCTTCCCAATCAACATGGGAACTGATCGCCGAGATTATAAAGAAAAGCTTGCATCAAATACTATTTATCTAATAGAAGGTGTAGCTCTTCAAGAGCTTTGGAGCAAAACACACTACGCAGTTATGTTTGGCTTTGCTTCCAAGCTTGAAGGGCAAGGTCGGGTGGATTGTTCCGTGAGATTAGTCGAGGTGCGCTCAAAGTTACTGCTGTCACTTAAAGTTTCATTCTTCCGGGCACTACGGATCGTGAGGGAAACGCATTGCACTGTGGGGGCTACCATTTCTAAGTACATGGCAGTTAAAATGACGCTGGATGTTAATGCATCCACGTTTCACTGTGCCAACTTCTTA

Coding sequence (CDS)

ATGGTCCAAAAACTCCTTCGGAGTGTCCTTGTATGTAATATTCAGTTATTTGGACTTCTCAACGAAAAACCTCACGTACCTATAGCTGGAGTTTTGGTTAAGGAAAACAGGCCGCAAGTGATTTACAAGGCCGCAAGTGATTTACAAGGCCGCAACTCACAAACAATTCCTGCTGTTATCTACTGGCCAAACCCCGATATGCTATCGGCTCGCCCACTTGAGAAGCTTGCAGACAGTGACAGCTTATTGTGTGCCACAGTGAGCTATTTCAACCTCAGCATCTTCCCAATCAACATGGGAACTGATCGCCGAGATTATAAAGAAAAGCTTGCATCAAATACTATTTATCTAATAGAAGGTGTAGCTCTTCAAGAGCTTTGGAGCAAAACACACTACGCAGTTATGTTTGGCTTTGCTTCCAAGCTTGAAGGGCAAGGTCGGGTGGATTGTTCCGTGAGATTAGTCGAGGTGCGCTCAAAGTTACTGCTGTCACTTAAAGTTTCATTCTTCCGGGCACTACGGATCGTGAGGGAAACGCATTGCACTGTGGGGGCTACCATTTCTAAGTACATGGCAGTTAAAATGACGCTGGATGTTAATGCATCCACGTTTCACTGTGCCAACTTCTTA

Protein sequence

MVQKLLRSVLVCNIQLFGLLNEKPHVPIAGVLVKENRPQVIYKAASDLQGRNSQTIPAVIYWPNPDMLSARPLEKLADSDSLLCATVSYFNLSIFPINMGTDRRDYKEKLASNTIYLIEGVALQELWSKTHYAVMFGFASKLEGQGRVDCSVRLVEVRSKLLLSLKVSFFRALRIVRETHCTVGATISKYMAVKMTLDVNASTFHCANFL
Homology
[Close]
BLAST of Lsi04G021650 vs. TrEMBL
Match: A0A0A0LGQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G879520 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 57/140 (40.71%), Postives = 71/140 (50.71%), Query Frame = 1 

Query: 57  PAVIYWPNPDMLSARP-LEKLADSDSLLCATVSYFNLSIFPINMGTDRRDYKEKLASNTI 116
           PAV+  PNPDML A P LEKLADSDSL C + S  NL + P       RDYKEKL SNT 
Sbjct: 30  PAVVDCPNPDMLPACPQLEKLADSDSLFCISSSPINLELIP-------RDYKEKLPSNTT 89

Query: 117 YLIEGVALQELWSKTHYAVMFGFASKLEGQGRVDCSVRLVEVRSKLLLSLKVSFFRALRI 176
              +   L  + +  H   +   +++ E                   +   + F R+   
Sbjct: 90  VCRDYFILVHVATIKHPRNLLATSTETEFHS--------------FCMGGSLKFCRSTED 148

Query: 177 -VRETHCTVGATISKYMAVK 195
             R THCTVGATIS+YMAVK
Sbjct: 150 RERGTHCTVGATISEYMAVK 148

[Close]
BLAST of Lsi04G021650 vs. NCBI nr
Match: gi|700205001|gb|KGN60134.1| (hypothetical protein Csa_3G879520 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 57/140 (40.71%), Postives = 71/140 (50.71%), Query Frame = 1 

Query: 57  PAVIYWPNPDMLSARP-LEKLADSDSLLCATVSYFNLSIFPINMGTDRRDYKEKLASNTI 116
           PAV+  PNPDML A P LEKLADSDSL C + S  NL + P       RDYKEKL SNT 
Sbjct: 30  PAVVDCPNPDMLPACPQLEKLADSDSLFCISSSPINLELIP-------RDYKEKLPSNTT 89

Query: 117 YLIEGVALQELWSKTHYAVMFGFASKLEGQGRVDCSVRLVEVRSKLLLSLKVSFFRALRI 176
              +   L  + +  H   +   +++ E                   +   + F R+   
Sbjct: 90  VCRDYFILVHVATIKHPRNLLATSTETEFHS--------------FCMGGSLKFCRSTED 148

Query: 177 -VRETHCTVGATISKYMAVK 195
             R THCTVGATIS+YMAVK
Sbjct: 150 RERGTHCTVGATISEYMAVK 148

The following BLAST results are available for this feature:
BLAST of Lsi04G021650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G021650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGQ8_CUCSA1.3e-1140.71Uncharacterized protein OS=Cucumis sativus GN=Csa_3G879520 PE=4 SV=1[more]
BLAST of Lsi04G021650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G021650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205001|gb|KGN60134.1|1.9e-1140.71hypothetical protein Csa_3G879520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G021650.1Lsi04G021650.1mRNA