Lsi04G019050 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G019050
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionN-acetyl-D-glucosamine kinase
Locationchr04 : 26192468 .. 26193355 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGGTGCAGAAATGGCGAACTGTGGGATTTTGAGCACGAGATTCTTGGCGGAGATGATATTATACTTGGAATCGACGGCGGTACCACTTCTACTGTTTGCGTTTGTATCGCTCTCTCTGATCCTCGAGTTGTTTCTCCTTCAATGTCTTGTCCTATACTCGTTCGTGTTGTTGGTGGCTGCTCAAATCATAATAGTGTTGGCGGTACTTTACTATCTTTGTCATTTCTCTCGGTTCTAGCTATGTTTTCCGCTTTTGCAGAGTCAATTTGGACCATGAGTTGACTTTACTTCTTTAAAACGCTATCATTTGTATTATTCTTGTCCGAAATGACACAAACAAGTAAACATTTAAGACGATTGAAGAATTCATTAAAATTCCTGATCGGATGTTGTTAGTTATCTGGGCATTTCCTTTCTGCCCATTTTTTCCCCTCAAGGCAATTGCAAAAATATCGACGATTCTTTGCAAGAGTTTGTAATTTTTCTCATTAAATTCCAGATTTTATTACCTTGTTTAGTTGTTTGTCTGCACCTTCATTGTATTGTATTTCCACGTAATTTTGTTGCATGTAGTTTATAGTCGGTACAAAAAACGGTTCCTTCATGGAGGATCAAATTTAGGTGTTCGGTGTCTGTGTTGGACTAATTGTAAGCATGTCTGATTCCTTTATCGTGAATTTGAATCCTACAAAATATGATAACATGCTGCCATCTCTAGAAACTGCTGCGAGGGAAACATTGGAGCAAGTTATGGCGGAGGCACTTTCAAAGTCTGGTTCAATTCGATCTTCAGTTCGAGCTGTCTGCCTAGCTGTTTCTGGGGTCAACCATCCAACGGATCAACAAAGAATTTTGGATTGGCTTAGGTATTCATTCTTCTAG

mRNA sequence

ATGAAGAGGTGCAGAAATGGCGAACTGTGGGATTTTGAGCACGAGATTCTTGGCGGAGATGATATTATACTTGGAATCGACGGCGGTACCACTTCTACTGTTTGCGTTTGTATCGCTCTCTCTGATCCTCGAGTTGTTTCTCCTTCAATGTCTTGTCCTATACTCGTTCGTGTTGTTGGTGGCTGCTCAAATCATAATAGTGTTGGCGGTACTTTACTATCTTTGTCATTTCTCTCGGTTCTAGCTATGTTTTCCGCTTTTGCAGAGTCAATTTGGACCATGATTTATAGTCGGTACAAAAAACGGTTCCTTCATGGAGGATCAAATTTAGAAACTGCTGCGAGGGAAACATTGGAGCAAGTTATGGCGGAGGCACTTTCAAAGTCTGGTTCAATTCGATCTTCAGTTCGAGCTGTCTGCCTAGCTGTTTCTGGGGTCAACCATCCAACGGATCAACAAAGAATTTTGGATTGGCTTAGGTATTCATTCTTCTAG

Coding sequence (CDS)

ATGAAGAGGTGCAGAAATGGCGAACTGTGGGATTTTGAGCACGAGATTCTTGGCGGAGATGATATTATACTTGGAATCGACGGCGGTACCACTTCTACTGTTTGCGTTTGTATCGCTCTCTCTGATCCTCGAGTTGTTTCTCCTTCAATGTCTTGTCCTATACTCGTTCGTGTTGTTGGTGGCTGCTCAAATCATAATAGTGTTGGCGGTACTTTACTATCTTTGTCATTTCTCTCGGTTCTAGCTATGTTTTCCGCTTTTGCAGAGTCAATTTGGACCATGATTTATAGTCGGTACAAAAAACGGTTCCTTCATGGAGGATCAAATTTAGAAACTGCTGCGAGGGAAACATTGGAGCAAGTTATGGCGGAGGCACTTTCAAAGTCTGGTTCAATTCGATCTTCAGTTCGAGCTGTCTGCCTAGCTGTTTCTGGGGTCAACCATCCAACGGATCAACAAAGAATTTTGGATTGGCTTAGGTATTCATTCTTCTAG

Protein sequence

MKRCRNGELWDFEHEILGGDDIILGIDGGTTSTVCVCIALSDPRVVSPSMSCPILVRVVGGCSNHNSVGGTLLSLSFLSVLAMFSAFAESIWTMIYSRYKKRFLHGGSNLETAARETLEQVMAEALSKSGSIRSSVRAVCLAVSGVNHPTDQQRILDWLRYSFF
Homology
[Close]
BLAST of Lsi04G019050 vs. TrEMBL
Match: A0A0A0L1P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G616780 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-31
Identity = 68/82 (82.93%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 1  MKRCRNGELWDFEHEILGGDDIILGIDGGTTSTVCVCIALSDPRVVSPSMSCPILVRVVG 60
          MKRCRN ELWDFEHEILGGDDIILGIDGGTTSTVCVCI LSDPRVVSPSMSCP+L RVVG
Sbjct: 1  MKRCRNDELWDFEHEILGGDDIILGIDGGTTSTVCVCIGLSDPRVVSPSMSCPMLARVVG 60

Query: 61 GCSNHNSVGGTLLSLSFLSVLA 83
          GCSNHNSVG T    +   V+A
Sbjct: 61 GCSNHNSVGETAARETLEQVMA 82

[Close]
BLAST of Lsi04G019050 vs. TrEMBL
Match: M1BWG4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021156 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.7e-26
Identity = 82/170 (48.24%), Postives = 96/170 (56.47%), Query Frame = 1 

Query: 1   MKRCRNGELWDFEHEI-LGGD------DIILGIDGGTTSTVCVCIALSDPRVVSPSMSCP 60
           MKR RNGE+WDFE E+ L GD      ++ILG+DG TT TVCVC+ L       P    P
Sbjct: 1   MKRYRNGEIWDFEEEMQLLGDGFCDQREVILGLDGDTTCTVCVCMPLIPFADELPDPP-P 60

Query: 61  ILVRVVGGCSNHNSVGGTLLSLSFLSVLAMFSAFAESIWTMIYSRYKKRFLHGGSNLETA 120
           IL R V GCSNHNSVG           +     F ES                      A
Sbjct: 61  ILSRAVAGCSNHNSVG-----------VLNKDPFTES----------------------A 120

Query: 121 ARETLEQVMAEALSKSGSIRSSVRAVCLAVSGVNHPTDQQRILDWLRYSF 164
           AR+ LE VMA+ALSK+GS R  V+AVCLAVSGVNHPTD +RI++WLR  F
Sbjct: 121 ARDALELVMADALSKAGSTRFCVQAVCLAVSGVNHPTDIERIMNWLRDIF 136

[Close]
BLAST of Lsi04G019050 vs. TrEMBL
Match: W9SHX8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012708 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.6e-22
Identity = 72/165 (43.64%), Postives = 84/165 (50.91%), Query Frame = 1 

Query: 2   KRCRNGELWDFEHE---ILGGDDIILGIDGGTTSTVCVCIALSDPRVVSPSMSCPILVRV 61
           KR RNGE+WDFEHE   + G  D+ILG+DGGTTSTVC+C+ +  P   SPS   P+L R 
Sbjct: 3   KRNRNGEIWDFEHEMPVVAGAGDVILGLDGGTTSTVCICMPII-PFSDSPSDPPPVLARA 62

Query: 62  VGGCSNHNSVGGTLLSLSFLSVLAMFSAFAESIWTMIYSRYKKRFLHGGSNLETAARETL 121
           V GCSNHNSVG      +   V+A                     L  GSN         
Sbjct: 63  VAGCSNHNSVGEAAARETLEKVMA------------------DALLKSGSNRSA------ 122

Query: 122 EQVMAEALSKSGSIRSSVRAVCLAVSGVNHPTDQQRILDWLRYSF 164
             V A  L+               VSGVNHPTDQQRIL+WLRY F
Sbjct: 123 --VRAVCLA---------------VSGVNHPTDQQRILNWLRYIF 125

[Close]
BLAST of Lsi04G019050 vs. TrEMBL
Match: A0A059DD75_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00888 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.0e-20
Identity = 72/167 (43.11%), Postives = 88/167 (52.69%), Query Frame = 1 

Query: 1   MKRCRNGELWDFEHE--ILGG-DDIILGIDGGTTSTVCVCIALSDPRVVSPSMS-CPILV 60
           MKR RNGE+WDFEHE  ++GG D+++LG+DGGTTSTVC+C+ L   RV  P     P+L 
Sbjct: 1   MKRYRNGEIWDFEHEMPVVGGNDEVVLGLDGGTTSTVCICMPLL--RVADPFPDPLPVLA 60

Query: 61  RVVGGCSNHNSVGGTLLSLSFLSVLAMFSAFAESIWTMIYSRYKKRFLHGGSNLETAARE 120
           R V GCSNHNSVG      +   V+A   A A+S                GSN       
Sbjct: 61  RAVAGCSNHNSVGEAAARETLEQVMA--DALAKS----------------GSNRSA---- 120

Query: 121 TLEQVMAEALSKSGSIRSSVRAVCLAVSGVNHPTDQQRILDWLRYSF 164
               V A  L+ S               GVNHPTDQQRI++WLR  F
Sbjct: 121 ----VRAVCLAVS---------------GVNHPTDQQRIVNWLREMF 124

[Close]
BLAST of Lsi04G019050 vs. TrEMBL
Match: B9S6G6_RICCO (N-acetylglucosamine kinase, putative OS=Ricinus communis GN=RCOM_0536320 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.8e-19
Identity = 68/165 (41.21%), Postives = 80/165 (48.48%), Query Frame = 1 

Query: 1   MKRCRNGELWDFEHEI--LGGDDIILGIDGGTTSTVCVCIALSDPRVVSPSMSCPILVRV 60
           MKR RNGE+WDFEHEI   G + +ILG+DGGTTSTVC+C+ +       P    P+L R 
Sbjct: 1   MKRYRNGEIWDFEHEIPVSGNNPVILGLDGGTTSTVCICMPILPFSTPLPD-PLPVLARA 60

Query: 61  VGGCSNHNSVGGTLLSLSFLSVLAMFSAFAESIWTMIYSRYKKRFLHGGSNLETAARETL 120
           V GCSNHNSVG T    +   V+A                     L  GSN         
Sbjct: 61  VAGCSNHNSVGETAARETLEEVMA------------------DALLKSGSNRSA------ 120

Query: 121 EQVMAEALSKSGSIRSSVRAVCLAVSGVNHPTDQQRILDWLRYSF 164
             V A  L+               VSGVNHP D QRIL+WLR  F
Sbjct: 121 --VQAVCLA---------------VSGVNHPNDVQRILNWLRDIF 123

[Close]
BLAST of Lsi04G019050 vs. TAIR10
Match: AT1G30540.1 (AT1G30540.1 Actin-like ATPase superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-13
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 111 ETAARETLEQVMAEALSKSGSIRSSVRAVCLAVSGVNHPTDQQRILDWLRYSF 164
           ETAAR++LEQV++EAL +SG  +S VR VCL VSGVNHP+DQ++I +W+R  F
Sbjct: 78  ETAARDSLEQVISEALVQSGFDKSDVRGVCLGVSGVNHPSDQEKIENWIRDMF 130

[Close]
BLAST of Lsi04G019050 vs. NCBI nr
Match: gi|659129372|ref|XP_008464652.1| (PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 5.9e-32
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 1 

Query: 1  MKRCRNGELWDFEHEILGGDDIILGIDGGTTSTVCVCIALSDPRVVSPSMSCPILVRVVG 60
          MKRCRNGELWDFEHEILGGDDIILGIDGGTTSTVCVCIALSDPRVVSPS+SCP+L RVVG
Sbjct: 1  MKRCRNGELWDFEHEILGGDDIILGIDGGTTSTVCVCIALSDPRVVSPSISCPMLARVVG 60

Query: 61 GCSNHNSVGGTLLSLSFLSVLA 83
          GCSNHNSVG T    +   V+A
Sbjct: 61 GCSNHNSVGETAARETLEQVMA 82

[Close]
BLAST of Lsi04G019050 vs. NCBI nr
Match: gi|449463605|ref|XP_004149522.1| (PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 3.8e-31
Identity = 68/82 (82.93%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 1  MKRCRNGELWDFEHEILGGDDIILGIDGGTTSTVCVCIALSDPRVVSPSMSCPILVRVVG 60
          MKRCRN ELWDFEHEILGGDDIILGIDGGTTSTVCVCI LSDPRVVSPSMSCP+L RVVG
Sbjct: 1  MKRCRNDELWDFEHEILGGDDIILGIDGGTTSTVCVCIGLSDPRVVSPSMSCPMLARVVG 60

Query: 61 GCSNHNSVGGTLLSLSFLSVLA 83
          GCSNHNSVG T    +   V+A
Sbjct: 61 GCSNHNSVGETAARETLEQVMA 82

[Close]
BLAST of Lsi04G019050 vs. NCBI nr
Match: gi|700199801|gb|KGN54959.1| (hypothetical protein Csa_4G616780 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 3.8e-31
Identity = 68/82 (82.93%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 1  MKRCRNGELWDFEHEILGGDDIILGIDGGTTSTVCVCIALSDPRVVSPSMSCPILVRVVG 60
          MKRCRN ELWDFEHEILGGDDIILGIDGGTTSTVCVCI LSDPRVVSPSMSCP+L RVVG
Sbjct: 1  MKRCRNDELWDFEHEILGGDDIILGIDGGTTSTVCVCIGLSDPRVVSPSMSCPMLARVVG 60

Query: 61 GCSNHNSVGGTLLSLSFLSVLA 83
          GCSNHNSVG T    +   V+A
Sbjct: 61 GCSNHNSVGETAARETLEQVMA 82

[Close]
BLAST of Lsi04G019050 vs. NCBI nr
Match: gi|703136470|ref|XP_010106164.1| (hypothetical protein L484_012708 [Morus notabilis])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 72/165 (43.64%), Postives = 84/165 (50.91%), Query Frame = 1 

Query: 2   KRCRNGELWDFEHE---ILGGDDIILGIDGGTTSTVCVCIALSDPRVVSPSMSCPILVRV 61
           KR RNGE+WDFEHE   + G  D+ILG+DGGTTSTVC+C+ +  P   SPS   P+L R 
Sbjct: 3   KRNRNGEIWDFEHEMPVVAGAGDVILGLDGGTTSTVCICMPII-PFSDSPSDPPPVLARA 62

Query: 62  VGGCSNHNSVGGTLLSLSFLSVLAMFSAFAESIWTMIYSRYKKRFLHGGSNLETAARETL 121
           V GCSNHNSVG      +   V+A                     L  GSN         
Sbjct: 63  VAGCSNHNSVGEAAARETLEKVMA------------------DALLKSGSNRSA------ 122

Query: 122 EQVMAEALSKSGSIRSSVRAVCLAVSGVNHPTDQQRILDWLRYSF 164
             V A  L+               VSGVNHPTDQQRIL+WLRY F
Sbjct: 123 --VRAVCLA---------------VSGVNHPTDQQRILNWLRYIF 125

[Close]
BLAST of Lsi04G019050 vs. NCBI nr
Match: gi|661880282|emb|CDP16078.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-21
Identity = 82/171 (47.95%), Postives = 95/171 (55.56%), Query Frame = 1 

Query: 5   RNGELWDFEHEI-LGGDD-------IILGIDGGTTSTVCVCIALSDPRVVSPSMSCPILV 64
           RNGE+WDFE E+ L  +D       +ILG+DGGTTSTVCVCI  +         +C    
Sbjct: 7   RNGEIWDFEAEMELSNNDSRYRQQAVILGLDGGTTSTVCVCIPFN--------YTCTD-- 66

Query: 65  RVVGGCSNHNSVGGTLLSLSFLSVLAMFSAFAESIWTMIYSRYKKRFLHGGSNL----ET 124
                 +N NS  G L      SVLA                   R + G SN     ET
Sbjct: 67  ------NNVNSEDGPLPEPP--SVLA-------------------RAVAGCSNHNSVGET 126

Query: 125 AARETLEQVMAEALSKSGSIRSSVRAVCLAVSGVNHPTDQQRILDWLRYSF 164
           AARETLE+VMAEAL +SGS RS+V AVCLAVSGVNHPTD+ RIL WLR  F
Sbjct: 127 AARETLERVMAEALLRSGSTRSAVLAVCLAVSGVNHPTDEYRILSWLRQIF 140

The following BLAST results are available for this feature:
BLAST of Lsi04G019050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G019050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1P0_CUCSA2.7e-3182.93Uncharacterized protein OS=Cucumis sativus GN=Csa_4G616780 PE=4 SV=1[more]
M1BWG4_SOLTU5.7e-2648.24Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021156 PE=4 SV=1[more]
W9SHX8_9ROSA8.6e-2243.64Uncharacterized protein OS=Morus notabilis GN=L484_012708 PE=4 SV=1[more]
A0A059DD75_EUCGR8.0e-2043.11Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00888 PE=4 SV=1[more]
B9S6G6_RICCO6.8e-1941.21N-acetylglucosamine kinase, putative OS=Ricinus communis GN=RCOM_0536320 PE=4 SV... [more]
BLAST of Lsi04G019050 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G30540.18.5e-1362.26 Actin-like ATPase superfamily protein[more]
BLAST of Lsi04G019050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129372|ref|XP_008464652.1|5.9e-3284.15PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis melo][more]
gi|449463605|ref|XP_004149522.1|3.8e-3182.93PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Cucumis sati... [more]
gi|700199801|gb|KGN54959.1|3.8e-3182.93hypothetical protein Csa_4G616780 [Cucumis sativus][more]
gi|703136470|ref|XP_010106164.1|1.2e-2143.64hypothetical protein L484_012708 [Morus notabilis][more]
gi|661880282|emb|CDP16078.1|2.1e-2147.95unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002731ATPase_BadF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G019050.1Lsi04G019050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002731ATPase, BadF/BadG/BcrA/BcrD typePFAMPF01869BcrAD_BadFGcoord: 24..158
score: 4.
NoneNo IPR availablePANTHERPTHR12862BADF TYPE ATPASE DOMAIN-CONTAINING PROTEINcoord: 108..163
score: 7.0E-37coord: 22..66
score: 7.0
NoneNo IPR availablePANTHERPTHR12862:SF6ACTIN-LIKE ATPASE SUPERFAMILY PROTEINcoord: 108..163
score: 7.0E-37coord: 22..66
score: 7.0