Lsi04G019040 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G019040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	N-acetyl-D-glucosamine kinase
Location	chr04 : 26191799 .. 26192255 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCATGCCTCGGACACATTCATGCCTGGAAAAATGGCATAAGGTGCTTGCTTAGAATTTACCTGGGCTACTGAAGATTTTCTTTTACTAATTAGTGAAACCTTGGTTCAGAATGAATACAGTCTTCTCGTGATTTGTTTTAGTAAAGAGAGTTTTGAGGTGCACAAGACTGTGACCTGCAAATTCCTCTGTTTACTAAGATCGATAATCTATGTGTACTAACTTATGATGAACAGGGATATCTTTCCCTGCCATGTAAACCTATATGTTCAAAATGATGCCGTGGCGGCTCTTGCAAGTGGCACTATGGGAAAGCTTCATGGATGCGTTTTAATTGCTGGAACTGGAACGATTGCTTATGGATTCACAGAGGATGGTCGAGAAGCTCGAGCTGCTGGTGCAGGACCGATCTTAGGTGATTGGGGAAGGTGGATTTTTCATTTTGTTCTCTAA

mRNA sequence

ATGGTATCATGCCTCGGACACATTCATGCCTGGAAAAATGGCATAAGGGATATCTTTCCCTGCCATGTAAACCTATATGTTCAAAATGATGCCGTGGCGGCTCTTGCAAGTGGCACTATGGGAAAGCTTCATGGATGCGTTTTAATTGCTGGAACTGGAACGATTGCTTATGGATTCACAGAGGATGGTCGAGAAGCTCGAGCTGCTGGTGCAGGACCGATCTTAGGTGATTGGGGAAGGTGGATTTTTCATTTTGTTCTCTAA

Coding sequence (CDS)

ATGGTATCATGCCTCGGACACATTCATGCCTGGAAAAATGGCATAAGGGATATCTTTCCCTGCCATGTAAACCTATATGTTCAAAATGATGCCGTGGCGGCTCTTGCAAGTGGCACTATGGGAAAGCTTCATGGATGCGTTTTAATTGCTGGAACTGGAACGATTGCTTATGGATTCACAGAGGATGGTCGAGAAGCTCGAGCTGCTGGTGCAGGACCGATCTTAGGTGATTGGGGAAGGTGGATTTTTCATTTTGTTCTCTAA

Protein sequence

MVSCLGHIHAWKNGIRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPILGDWGRWIFHFVL

Homology

[Close]

BLAST of Lsi04G019040 vs. Swiss-Prot
Match: NAGK_DICDI (N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1


Query: 12  KNGIRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGA 71
           K+ + ++    +N  + NDA+ AL+SGT GKL G V+I GTG I+ GF  +G   R+ G 
Sbjct: 95  KSWVTELLGESINYSIHNDAIVALSSGTQGKLFGVVIICGTGCISLGFNREGVSGRSGGW 154

Query: 72  GPILGDWG 80
           GP+LGD+G
Sbjct: 155 GPLLGDYG 162

[Close]

BLAST of Lsi04G019040 vs. Swiss-Prot
Match: MURK_CLOAB (N-acetylmuramic acid/N-acetylglucosamine kinase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=murK PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-06
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1


Query: 25  LYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPILGDWG 80
           + V NDA  ALA G + K  G ++I+GTG+I YG  ++GR AR+ G G I+GD G
Sbjct: 98  IIVVNDAEIALAGG-IEKREGIIVISGTGSICYGRNKEGRSARSGGWGHIIGDEG 151

[Close]

BLAST of Lsi04G019040 vs. TrEMBL
Match: A0A0A0L1P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G616780 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.7e-30
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 15  IRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 74
           +RDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI
Sbjct: 118 LRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 177

Query: 75  LGDWG 80
           LGDWG
Sbjct: 178 LGDWG 182

[Close]

BLAST of Lsi04G019040 vs. TrEMBL
Match: A0A067KRZ1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05213 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-28
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 15  IRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 74
           +RDIFP HV LYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI
Sbjct: 119 LRDIFPTHVKLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 178

Query: 75  LGDWG 80
           LGDWG
Sbjct: 179 LGDWG 183

[Close]

BLAST of Lsi04G019040 vs. TrEMBL
Match: W1PCP6_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00155p00052560 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-28
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 13  NGIRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAG 72
           N +RDIFP HV LYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGR+ARAAGAG
Sbjct: 102 NWLRDIFPSHVKLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRQARAAGAG 161

Query: 73  PILGDWG 80
           P+LGDWG
Sbjct: 162 PVLGDWG 168

[Close]

BLAST of Lsi04G019040 vs. TrEMBL
Match: B9S6G6_RICCO (N-acetylglucosamine kinase, putative OS=Ricinus communis GN=RCOM_0536320 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.2e-28
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 13  NGIRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAG 72
           N +RDIFP HV LYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDG+EARAAGAG
Sbjct: 117 NWLRDIFPNHVKLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGKEARAAGAG 176

Query: 73  PILGDWG 80
           PILGDWG
Sbjct: 177 PILGDWG 183

[Close]

BLAST of Lsi04G019040 vs. TrEMBL
Match: W9SHX8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012708 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-27
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 13  NGIRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAG 72
           N +R IFP HV LYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAG
Sbjct: 119 NWLRYIFPSHVGLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAG 178

Query: 73  PILGDWG 80
           PILGDWG
Sbjct: 179 PILGDWG 185

[Close]

BLAST of Lsi04G019040 vs. TAIR10
Match: AT1G30540.1 (AT1G30540.1 Actin-like ATPase superfamily protein)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-28
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 12  KNGIRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGA 71
           +N IRD+FP HV +YVQNDA+ ALASGTMGKLHGCVLIAGTG IAYGF EDG+EARA+G 
Sbjct: 123 ENWIRDMFPSHVKVYVQNDAIVALASGTMGKLHGCVLIAGTGCIAYGFDEDGKEARASGG 182

Query: 72  GPILGDWG 80
           GPILGDWG
Sbjct: 183 GPILGDWG 190

[Close]

BLAST of Lsi04G019040 vs. NCBI nr
Match: gi|449463605|ref|XP_004149522.1| (PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 15  IRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 74
           +RDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI
Sbjct: 118 LRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 177

Query: 75  LGDWG 80
           LGDWG
Sbjct: 178 LGDWG 182

[Close]

BLAST of Lsi04G019040 vs. NCBI nr
Match: gi|747076713|ref|XP_011085438.1| (PREDICTED: N-acetyl-D-glucosamine kinase-like isoform X2 [Sesamum indicum])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1


Query: 9   HAWKNGIRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARA 68
           H   N +R+IFP HV L+VQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARA
Sbjct: 132 HRIINWLREIFPSHVRLFVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARA 191

Query: 69  AGAGPILGDWGRWIF 84
           AGAGP+LGDWGRW +
Sbjct: 192 AGAGPVLGDWGRWTY 206

[Close]

BLAST of Lsi04G019040 vs. NCBI nr
Match: gi|700199801|gb|KGN54959.1| (hypothetical protein Csa_4G616780 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 15  IRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 74
           +RDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI
Sbjct: 118 LRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 177

Query: 75  LGDWG 80
           LGDWG
Sbjct: 178 LGDWG 182

[Close]

BLAST of Lsi04G019040 vs. NCBI nr
Match: gi|659129372|ref|XP_008464652.1| (PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 15  IRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 74
           +RDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI
Sbjct: 118 LRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 177

Query: 75  LGDWG 80
           LGDWG
Sbjct: 178 LGDWG 182

[Close]

BLAST of Lsi04G019040 vs. NCBI nr
Match: gi|802599994|ref|XP_012072706.1| (PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas])

HSP 1 Score: 131.3 bits (329), Expect = 8.0e-28
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1


Query: 15  IRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 74
           +RDIFP HV LYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI
Sbjct: 119 LRDIFPTHVKLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 178

Query: 75  LGDWG 80
           LGDWG
Sbjct: 179 LGDWG 183

The following BLAST results are available for this feature:

BLAST of Lsi04G019040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NAGK_DICDI	1.4e-11	45.59	N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2	[more]
MURK_CLOAB	6.6e-06	49.09	N-acetylmuramic acid/N-acetylglucosamine kinase OS=Clostridium acetobutylicum (s...	[more]

BLAST of Lsi04G019040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1P0_CUCSA	7.7e-30	98.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G616780 PE=4 SV=1	[more]
A0A067KRZ1_JATCU	5.5e-28	95.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05213 PE=4 SV=1	[more]
W1PCP6_AMBTC	5.5e-28	91.04	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00155p00052560 PE=4 SV=...	[more]
B9S6G6_RICCO	7.2e-28	92.54	N-acetylglucosamine kinase, putative OS=Ricinus communis GN=RCOM_0536320 PE=4 SV...	[more]
W9SHX8_9ROSA	2.1e-27	92.54	Uncharacterized protein OS=Morus notabilis GN=L484_012708 PE=4 SV=1	[more]

BLAST of Lsi04G019040 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30540.1	2.2e-28	80.88	Actin-like ATPase superfamily protein	[more]

BLAST of Lsi04G019040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463605\|ref\|XP_004149522.1\|	1.1e-29	98.46	PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Cucumis sati...	[more]
gi\|747076713\|ref\|XP_011085438.1\|	1.1e-29	84.00	PREDICTED: N-acetyl-D-glucosamine kinase-like isoform X2 [Sesamum indicum]	[more]
gi\|700199801\|gb\|KGN54959.1\|	1.1e-29	98.46	hypothetical protein Csa_4G616780 [Cucumis sativus]	[more]
gi\|659129372\|ref\|XP_008464652.1\|	1.1e-29	98.46	PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis melo]	[more]
gi\|802599994\|ref\|XP_012072706.1\|	8.0e-28	95.38	PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002731	ATPase_BadF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G019040.1	Lsi04G019040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002731	ATPase, BadF/BadG/BcrA/BcrD type	PFAM	PF01869	BcrAD_BadFG	coord: 24..81 score: 4.5
None	No IPR available	PANTHER	PTHR12862	BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN	coord: 15..79 score: 6.0
None	No IPR available	PANTHER	PTHR12862:SF6	ACTIN-LIKE ATPASE SUPERFAMILY PROTEIN	coord: 15..79 score: 6.0
None	No IPR available	unknown	SSF53067	Actin-like ATPase domain	coord: 44..79 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G019040	Csa4G616780	Cucumber (Chinese Long) v2	culsiB283

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G019040	Cucumber (Gy14) v1	cgylsiB047
Lsi04G019040	Cucurbita maxima (Rimu)	cmalsiB025
Lsi04G019040	Cucurbita maxima (Rimu)	cmalsiB427
Lsi04G019040	Cucurbita moschata (Rifu)	cmolsiB013
Lsi04G019040	Cucurbita moschata (Rifu)	cmolsiB415
Lsi04G019040	Cucurbita pepo (Zucchini)	cpelsiB456
Lsi04G019040	Cucurbita pepo (Zucchini)	cpelsiB465
Lsi04G019040	Cucurbita pepo (Zucchini)	cpelsiB639
Lsi04G019040	Wild cucumber (PI 183967)	cpilsiB283
Lsi04G019040	Wild cucumber (PI 183967)	cpilsiB297
Lsi04G019040	Cucumber (Chinese Long) v2	culsiB296
Lsi04G019040	Melon (DHL92) v3.5.1	lsimeB316
Lsi04G019040	Watermelon (Charleston Gray)	lsiwcgB259
Lsi04G019040	Watermelon (97103) v1	lsiwmB333
Lsi04G019040	Cucumber (Gy14) v2	cgyblsiB263
Lsi04G019040	Melon (DHL92) v3.6.1	lsimedB332
Lsi04G019040	Silver-seed gourd	carlsiB582
Lsi04G019040	Silver-seed gourd	carlsiB954
Lsi04G019040	Cucumber (Chinese Long) v3	cuclsiB304
Lsi04G019040	Cucumber (Chinese Long) v3	cuclsiB317
Lsi04G019040	Watermelon (97103) v2	lsiwmbB266
Lsi04G019040	Wax gourd	lsiwgoB402