Lsi04G018900 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G018900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	MYB transcription factor-like
Location	chr04 : 26055820 .. 26056589 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCGTTAGACTGGAGAGGATTTTTCGGTTTCTGCCTTTCTATAATTGCTGCTGCTCGTCTCCGATTCTCTCTTCGCTTCGATTTCTGTGATCTCCTCCCTCCATTCACGAATTTGAAACGAATTTCAAAATCAACGTCCTCTTCATCATCTGAATTTACCTAACGATTTCATCAATCGATTTTCCTCTTTTCGTCTTCATCGGTTGTTGTATGACGATTCAATCTTCTTCATTGTTATAATCAGAATATTTCTTCGTTTTTTGCCAAAAAAGAAGATGAAATCCTGTTTATCGGAGAGAATCGGAGTTAGACAGTACAATAAATCGGAACTTCCGCGGTTGCGGTGGACGCCGGAGCTTCATCGGTACTTCGTTCAGACAGTCGAGATCCTTGGCGGAAGAAATCGTAAGTTCTATTTTAGTTAAGTTTTTTGGTTCATTTCGCGTTCTCTGGCTTGGAAACAGAAATCATGAGAGAGAGAGTGTGTGCGCGCGCGCGCGTCCGTATACGAATCTTTGATTTGCTTTTTTTTTTTTTTCTTGAAATCTGACTTGTTGCAGAAGCAACGCCGAAAAGAATCCTGCAAATGATGGGAGTGAAAGGACTGAAGATTTCACACATAAAGAGCCATTTACAGGTACTTCTGATTTGAATTTTGATTAACTCTAATTTTCATCGCTATCGTTCGATTTAGTGATTACATTTACTCATCATGCTTGATTCAATTTATTTTCTTATTTATTTAATTTATTTTTAGTTTGATGCGATC

mRNA sequence

GGGCGTTAGACTGGAGAGGATTTTTCGGTTTCTGCCTTTCTATAATTGCTGCTGCTCGTCTCCGATTCTCTCTTCGCTTCGATTTCTGTGATCTCCTCCCTCCATTCACGAATTTGAAACGAATTTCAAAATCAACGTCCTCTTCATCATCTGAATTTACCTAACGATTTCATCAATCGATTTTCCTCTTTTCGTCTTCATCGGTTGTTGTATGACGATTCAATCTTCTTCATTGTTATAATCAGAATATTTCTTCGTTTTTTGCCAAAAAAGAAGATGAAATCCTGTTTATCGGAGAGAATCGGAGTTAGACAGTACAATAAATCGGAACTTCCGCGGTTGCGGTGGACGCCGGAGCTTCATCGGTACTTCGTTCAGACAGTCGAGATCCTTGGCGGAAGAAATCAAGCAACGCCGAAAAGAATCCTGCAAATGATGGGAGTGAAAGGACTGAAGATTTCACACATAAAGAGCCATTTACAGTTTGATGCGATC

Coding sequence (CDS)

ATGAAATCCTGTTTATCGGAGAGAATCGGAGTTAGACAGTACAATAAATCGGAACTTCCGCGGTTGCGGTGGACGCCGGAGCTTCATCGGTACTTCGTTCAGACAGTCGAGATCCTTGGCGGAAGAAATCAAGCAACGCCGAAAAGAATCCTGCAAATGATGGGAGTGAAAGGACTGAAGATTTCACACATAAAGAGCCATTTACAGTTTGATGCGATC

Protein sequence

MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQFDAI

Homology

[Close]

BLAST of Lsi04G018900 vs. Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-17
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 10 GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 69
          GVR Y +S +PRLRWTPELHR FV  V++LGG+ +ATPK +L++M VKGL ISH+KSHLQ
Sbjct: 14 GVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQ 73

[Close]

BLAST of Lsi04G018900 vs. Swiss-Prot
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.1e-12
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 2   KSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKI 61
           K   S  +G+++  ++  PR+RWT  LH +FV  V++LGG  +ATPK +L++M VK L +
Sbjct: 90  KRSSSSMVGLKRSIRA--PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL 149

Query: 62  SHIKSHLQ 70
           +H+KSHLQ
Sbjct: 150 AHVKSHLQ 155

[Close]

BLAST of Lsi04G018900 vs. Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 8.8e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 20 PRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 70
          PRLRWT ELH  FV  V  LGG ++ATPK I+++MGVKGL + H+KSHLQ
Sbjct: 35 PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 84

[Close]

BLAST of Lsi04G018900 vs. Swiss-Prot
Match: PHLC_ARATH (Myb family transcription factor PHL12 OS=Arabidopsis thaliana GN=PHL12 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.8e-12
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 20 PRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 70
          PRLRWT ELH  FV  V  LGG  +ATPK I+++MGVKGL + H+KSHLQ
Sbjct: 24 PRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

[Close]

BLAST of Lsi04G018900 vs. Swiss-Prot
Match: PHL3_ARATH (Protein PHR1-LIKE 3 OS=Arabidopsis thaliana GN=PHL3 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-11
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 20 PRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 70
          PRLRWT ELH  FV  V  LGG ++ATPK I++ MGVKGL + H+KSHLQ
Sbjct: 38 PRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 87

[Close]

BLAST of Lsi04G018900 vs. TrEMBL
Match: A0A0A0KZQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614170 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.5e-30
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
          MK C S+RIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPK+ILQMMGVKGLK
Sbjct: 1  MKFCSSDRIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKKILQMMGVKGLK 60

Query: 61 ISHIKSHLQ 70
          ISHIKSHLQ
Sbjct: 61 ISHIKSHLQ 69

[Close]

BLAST of Lsi04G018900 vs. TrEMBL
Match: A5C442_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032969 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-21
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 6  SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIK 65
          S+R GVRQYNKSE PRLRWTPELH +FV+ VE LGG+ +ATPKRILQMM VKGLKISH+K
Sbjct: 4  SQRTGVRQYNKSEFPRLRWTPELHDHFVEVVERLGGKYRATPKRILQMMSVKGLKISHVK 63

Query: 66 SHLQ 70
          SHLQ
Sbjct: 64 SHLQ 67

[Close]

BLAST of Lsi04G018900 vs. TrEMBL
Match: F6H579_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00980 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-21
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 6  SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIK 65
          S+R GVRQYNKSE PRLRWTPELH +FV+ VE LGG+ +ATPKRILQMM VKGLKISH+K
Sbjct: 4  SQRTGVRQYNKSEFPRLRWTPELHDHFVEVVERLGGKYRATPKRILQMMSVKGLKISHVK 63

Query: 66 SHLQ 70
          SHLQ
Sbjct: 64 SHLQ 67

[Close]

BLAST of Lsi04G018900 vs. TrEMBL
Match: V4SRB2_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033825mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-21
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 6  SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIK 65
          S+R GVRQYNKSELPRLRWTPELH++F Q VE LGG+ +A+PKRIL MM VKGLK+SHIK
Sbjct: 4  SQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIK 63

Query: 66 SHLQ 70
          SHLQ
Sbjct: 64 SHLQ 67

[Close]

BLAST of Lsi04G018900 vs. TrEMBL
Match: A0A067DDH7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038544mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-21
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 6  SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIK 65
          S+R GVRQYNKSELPRLRWTPELH++F Q VE LGG+ +A+PKRIL MM VKGLK+SHIK
Sbjct: 4  SQRTGVRQYNKSELPRLRWTPELHKHFSQAVERLGGKYKASPKRILHMMNVKGLKLSHIK 63

Query: 66 SHLQ 70
          SHLQ
Sbjct: 64 SHLQ 67

[Close]

BLAST of Lsi04G018900 vs. TAIR10
Match: AT2G02060.1 (AT2G02060.1 Homeodomain-like superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 10 GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 69
          GVR Y +S +PRLRWTP+LHR FV  VEILGG+++ATPK +L+MM VKGL ISH+KSHLQ
Sbjct: 20 GVRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQ 79

[Close]

BLAST of Lsi04G018900 vs. TAIR10
Match: AT1G14600.1 (AT1G14600.1 Homeodomain-like superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-18
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 10 GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 69
          GVR Y +S +PRLRWTPELHR FV  V++LGG+ +ATPK +L++M VKGL ISH+KSHLQ
Sbjct: 14 GVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQ 73

[Close]

BLAST of Lsi04G018900 vs. TAIR10
Match: AT2G40260.1 (AT2G40260.1 Homeodomain-like superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-18
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 11  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 70
           VR YN+S+ PRLRWTPELH  F+Q VE LGG ++ATPK +LQ+M VKGL I+H+KSHLQ
Sbjct: 74  VRPYNRSKTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQ 132

[Close]

BLAST of Lsi04G018900 vs. TAIR10
Match: AT2G42660.1 (AT2G42660.1 Homeodomain-like superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-17
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 11  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 70
           VRQY +S +PRLRWTP+LH  FV+ V+ LGG ++ATPK +L+MM +KGL I+H+KSHLQ
Sbjct: 42  VRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQ 100

[Close]

BLAST of Lsi04G018900 vs. TAIR10
Match: AT2G38300.1 (AT2G38300.1 myb-like HTH transcriptional regulator family protein)

HSP 1 Score: 84.0 bits (206), Expect = 4.3e-17
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 11  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQ 70
           VR Y +S++PRLRWTP+LH  FV+ VE LGG+ +ATPK + QMM +KGL I+H+KSHLQ
Sbjct: 46  VRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQ 104

[Close]

BLAST of Lsi04G018900 vs. NCBI nr
Match: gi|659133574|ref|XP_008466798.1| (PREDICTED: probable transcription factor KAN4 isoform X2 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-30
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
          MKSC S+RIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPK+ILQMMGVKGLK
Sbjct: 1  MKSCSSDRIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKKILQMMGVKGLK 60

Query: 61 ISHIKSHLQ 70
          ISHIKSHLQ
Sbjct: 61 ISHIKSHLQ 69

[Close]

BLAST of Lsi04G018900 vs. NCBI nr
Match: gi|659133572|ref|XP_008466796.1| (PREDICTED: putative Myb family transcription factor At1g14600 isoform X1 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-30
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
          MKSC S+RIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPK+ILQMMGVKGLK
Sbjct: 1  MKSCSSDRIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKKILQMMGVKGLK 60

Query: 61 ISHIKSHLQ 70
          ISHIKSHLQ
Sbjct: 61 ISHIKSHLQ 69

[Close]

BLAST of Lsi04G018900 vs. NCBI nr
Match: gi|778695370|ref|XP_011653983.1| (PREDICTED: uncharacterized protein LOC105435279 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MKSCLSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLK 60
          MK C S+RIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPK+ILQMMGVKGLK
Sbjct: 1  MKFCSSDRIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKKILQMMGVKGLK 60

Query: 61 ISHIKSHLQ 70
          ISHIKSHLQ
Sbjct: 61 ISHIKSHLQ 69

[Close]

BLAST of Lsi04G018900 vs. NCBI nr
Match: gi|1009127235|ref|XP_015880587.1| (PREDICTED: putative Myb family transcription factor At1g14600 [Ziziphus jujuba])

HSP 1 Score: 111.3 bits (277), Expect = 7.1e-22
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 1


Query: 6  SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIK 65
          S+RIGVRQYNKSE PRLRWTP+LH+ FV+ VE LGG+N+ATPKRILQ M VKGLKISH+K
Sbjct: 4  SQRIGVRQYNKSEFPRLRWTPQLHQLFVEAVEGLGGKNKATPKRILQTMSVKGLKISHVK 63

Query: 66 SHLQ 70
          SHLQ
Sbjct: 64 SHLQ 67

[Close]

BLAST of Lsi04G018900 vs. NCBI nr
Match: gi|147827062|emb|CAN70877.1| (hypothetical protein VITISV_032969 [Vitis vinifera])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 6  SERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIK 65
          S+R GVRQYNKSE PRLRWTPELH +FV+ VE LGG+ +ATPKRILQMM VKGLKISH+K
Sbjct: 4  SQRTGVRQYNKSEFPRLRWTPELHDHFVEVVERLGGKYRATPKRILQMMSVKGLKISHVK 63

Query: 66 SHLQ 70
          SHLQ
Sbjct: 64 SHLQ 67

The following BLAST results are available for this feature:

BLAST of Lsi04G018900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYBF_ARATH	2.4e-17	66.67	Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At...	[more]
KAN4_ARATH	5.1e-12	45.59	Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1	[more]
APL_ARATH	8.8e-12	64.00	Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=1 SV=2	[more]
PHLC_ARATH	8.8e-12	64.00	Myb family transcription factor PHL12 OS=Arabidopsis thaliana GN=PHL12 PE=2 SV=1	[more]
PHL3_ARATH	1.1e-11	64.00	Protein PHR1-LIKE 3 OS=Arabidopsis thaliana GN=PHL3 PE=1 SV=1	[more]

BLAST of Lsi04G018900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZQ0_CUCSA	8.5e-30	94.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614170 PE=4 SV=1	[more]
A5C442_VITVI	1.1e-21	79.69	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032969 PE=4 SV=1	[more]
F6H579_VITVI	1.1e-21	79.69	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00980 PE=4 SV=...	[more]
V4SRB2_9ROSI	4.2e-21	78.13	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033825mg PE=...	[more]
A0A067DDH7_CITSI	4.2e-21	78.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038544mg PE=4 SV=1	[more]

BLAST of Lsi04G018900 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02060.1	1.2e-19	70.00	Homeodomain-like superfamily protein	[more]
AT1G14600.1	1.3e-18	66.67	Homeodomain-like superfamily protein	[more]
AT2G40260.1	1.8e-18	67.80	Homeodomain-like superfamily protein	[more]
AT2G42660.1	2.5e-17	62.71	Homeodomain-like superfamily protein	[more]
AT2G38300.1	4.3e-17	62.71	myb-like HTH transcriptional regulator family protein	[more]

BLAST of Lsi04G018900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133574\|ref\|XP_008466798.1\|	2.5e-30	95.65	PREDICTED: probable transcription factor KAN4 isoform X2 [Cucumis melo]	[more]
gi\|659133572\|ref\|XP_008466796.1\|	2.5e-30	95.65	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1 [Cucumi...	[more]
gi\|778695370\|ref\|XP_011653983.1\|	1.2e-29	94.20	PREDICTED: uncharacterized protein LOC105435279 [Cucumis sativus]	[more]
gi\|1009127235\|ref\|XP_015880587.1\|	7.1e-22	79.69	PREDICTED: putative Myb family transcription factor At1g14600 [Ziziphus jujuba]	[more]
gi\|147827062\|emb\|CAN70877.1\|	1.6e-21	79.69	hypothetical protein VITISV_032969 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017930	Myb_dom
IPR009057	Homeobox-like_sf
IPR006447	Myb_dom_plants
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G018900.1	Lsi04G018900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 21..69 score: 2.
IPR006447	Myb domain, plants	TIGRFAMs	TIGR01557	TIGR01557	coord: 20..69 score: 2.3
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 17..69 score: 1.9
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 20..69 score: 1.15
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 16..73 score: 9
None	No IPR available	PANTHER	PTHR31314	FAMILY NOT NAMED	coord: 6..69 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G018900	Csa4G614170	Cucumber (Chinese Long) v2	culsiB283
Lsi04G018900	CSPI04G21690	Wild cucumber (PI 183967)	cpilsiB283
Lsi04G018900	Cucsa.058770	Cucumber (Gy14) v1	cgylsiB047
Lsi04G018900	CmaCh09G007280	Cucurbita maxima (Rimu)	cmalsiB025
Lsi04G018900	CmaCh01G013210	Cucurbita maxima (Rimu)	cmalsiB427
Lsi04G018900	CmoCh01G013740	Cucurbita moschata (Rifu)	cmolsiB415
Lsi04G018900	CmoCh09G007220	Cucurbita moschata (Rifu)	cmolsiB013
Lsi04G018900	Cla023240	Watermelon (97103) v1	lsiwmB333
Lsi04G018900	MELO3C022963	Melon (DHL92) v3.5.1	lsimeB319
Lsi04G018900	ClCG11G016560	Watermelon (Charleston Gray)	lsiwcgB259
Lsi04G018900	MELO3C022963.2	Melon (DHL92) v3.6.1	lsimedB336
Lsi04G018900	Cla97C11G222490	Watermelon (97103) v2	lsiwmbB266
Lsi04G018900	Bhi09G002996	Wax gourd	lsiwgoB402
Lsi04G018900	Cp4.1LG06g05660	Cucurbita pepo (Zucchini)	cpelsiB639
Lsi04G018900	Cp4.1LG02g02600	Cucurbita pepo (Zucchini)	cpelsiB465
Lsi04G018900	CsGy4G020210	Cucumber (Gy14) v2	cgyblsiB263
Lsi04G018900	Carg24720	Silver-seed gourd	carlsiB582
Lsi04G018900	Carg20046	Silver-seed gourd	carlsiB954
Lsi04G018900	CsaV3_4G032020	Cucumber (Chinese Long) v3	cuclsiB304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G018900	Melon (DHL92) v3.6.1	lsimedB340