Lsi04G015890 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G015890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDipeptidyl peptidase family member 6
Locationchr04 : 23416999 .. 23418080 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGTGGATCAAAGTAGGTTGAGTCGAATTACCATAACTGCGTTAGTAAGCTTGATGGCTAGAAAAGTAATGGTATGCATATATTTCCCTTGCGTGTACAAATTTGTATGAAGCTTATACATAATAAATTACTACCGTGATTTGTGCTGATTTCGGGTATGATTTTCAGAACAAAAGTGTCTTAGTTGATGAAGTATAGCTTTTAAATGAAGTCCTGGTGTGTCATGAATGTCTCATCTCTCTGTGAGGAAAGTGGATACATTTTGTACATTGTGAATAAGATAAAAGTGATAGTTATCTTGGTATGGTGTTATTTTGAGATGGAATAAGTTTACATTTTTTCCTTGAATAATTGCAGGACATCTTAAGAAACTAATTACTTCAAACATATTTGGATACACACCCAGCCTCTTTTACTATTGTGGCATTCCAACTCATGTTATATTTTGACTTTTTTTAGATTTTTTTTTTTTTTAAAGCCGTAGATGAAATAGTACGGTGAATGCATTACAATCATTTCTCAAAAGCTGCAAACTAATTGGCATGGACGATACATTACATTCTTCAAGTTTTGTTTACGCATTGCTCCAGACATTAATTTCAGTCTCTTTCCAGTGTTAAGGTTAGCTTACGAATGCAAATATCTTTCTTTCCTCACTTGCTTATAGTTTCTTTCCTTTTTGAATGCTAAATACCTTCTCTTTTAAATTGAATCTCCCAAGGAAACTCTCAAGTCCAAATGCAATGTGAAAATGGAATCTTTGAAGTCTGTTTGGAATAAAGTTATCGCTAATGTGTTACCATGTACTTTGTTGTTGTTTTGGAATAGACAGTTGGTTGACCTTGCGCGTGTTGAGAGTAGAAAGCACATATTTGAATCTCATTATATTGGTAATATTGTAGGTGAGTTTGAAAGAACCAAAGTGTGGGATCACAAACTGAGTTCTTTAGACTCTTTTTAGTGCATGATGCTGACTTTATGCATTGCAGGAGGTGAAAGAGATACTTATGAGACGTTGCCAATTAATTTTGTAGAAAACTTTTCATGTCCTATAAATCTTGTTCTAGTGATTGGATGA

mRNA sequence

ATGGACGTGGATCAAAGTAGGTTGAGTCGAATTACCATAACTGCGTTAGTAAGCTTGATGGCTAGAAAAGTAATGTTGGTTGACCTTGCGCGTGTTGAGAGTAGAAAGCACATATTTGAATCTCATTATATTGGTAATATTGTAGGAGGTGAAAGAGATACTTATGAGACGTTGCCAATTAATTTTGTAGAAAACTTTTCATGTCCTATAAATCTTGTTCTAGTGATTGGATGA

Coding sequence (CDS)

ATGGACGTGGATCAAAGTAGGTTGAGTCGAATTACCATAACTGCGTTAGTAAGCTTGATGGCTAGAAAAGTAATGTTGGTTGACCTTGCGCGTGTTGAGAGTAGAAAGCACATATTTGAATCTCATTATATTGGTAATATTGTAGGAGGTGAAAGAGATACTTATGAGACGTTGCCAATTAATTTTGTAGAAAACTTTTCATGTCCTATAAATCTTGTTCTAGTGATTGGATGA

Protein sequence

MDVDQSRLSRITITALVSLMARKVMLVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINLVLVIG
Homology
[Close]
BLAST of Lsi04G015890 vs. TrEMBL
Match: A0A0A0L4T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639050 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-08
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 

Query: 26  LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINL 73
           + DL  + +  H FESHYIGN+VG ERD YE  PINFVE FSCP+ L
Sbjct: 555 VADLHMLNAEMHKFESHYIGNLVGDERDFYERSPINFVEKFSCPLIL 601

[Close]
BLAST of Lsi04G015890 vs. TrEMBL
Match: A0A059BIZ9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00027 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 26  LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINL 73
           + DL  + +  H FESHYI N+VG E+D YE  PINFVE FSCPI L
Sbjct: 556 IADLNMLRAEMHKFESHYIDNLVGSEKDCYERSPINFVEKFSCPIIL 602

[Close]
BLAST of Lsi04G015890 vs. TrEMBL
Match: A0A059BJX9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00027 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 26  LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINL 73
           + DL  + +  H FESHYI N+VG E+D YE  PINFVE FSCPI L
Sbjct: 634 IADLNMLRAEMHKFESHYIDNLVGSEKDCYERSPINFVEKFSCPIIL 680

[Close]
BLAST of Lsi04G015890 vs. TrEMBL
Match: A0A059BJB5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00027 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 26  LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINL 73
           + DL  + +  H FESHYI N+VG E+D YE  PINFVE FSCPI L
Sbjct: 556 IADLNMLRAEMHKFESHYIDNLVGSEKDCYERSPINFVEKFSCPIIL 602

[Close]
BLAST of Lsi04G015890 vs. TrEMBL
Match: F6H1E0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11140 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-07
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 

Query: 26  LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINL 73
           + DL+ + +  H FESHYI N+VGGE D +E  PINFV+ FSCPI L
Sbjct: 605 VADLSLLRAETHKFESHYIDNLVGGESDYFERSPINFVDKFSCPIIL 651

[Close]
BLAST of Lsi04G015890 vs. TAIR10
Match: AT5G36210.1 (AT5G36210.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-09
Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 1 

Query: 14  TALVSLMARKVM--------LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVEN 73
           T L SL  R V         + DL  ++   H FES YI N+VG E+D YE  PINFV+ 
Sbjct: 584 TTLASLAFRDVFKAGASLYGVADLKMLKEEGHKFESRYIDNLVGDEKDFYERSPINFVDK 643

[Close]
BLAST of Lsi04G015890 vs. NCBI nr
Match: gi|778696038|ref|XP_011654091.1| (PREDICTED: uncharacterized protein LOC101221995 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-08
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 

Query: 26  LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINL 73
           + DL  + +  H FESHYIGN+VG ERD YE  PINFVE FSCP+ L
Sbjct: 555 VADLHMLNAEMHKFESHYIGNLVGDERDFYERSPINFVEKFSCPLIL 601

[Close]
BLAST of Lsi04G015890 vs. NCBI nr
Match: gi|629100733|gb|KCW66202.1| (hypothetical protein EUGRSUZ_F00027 [Eucalyptus grandis])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 26  LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINL 73
           + DL  + +  H FESHYI N+VG E+D YE  PINFVE FSCPI L
Sbjct: 556 IADLNMLRAEMHKFESHYIDNLVGSEKDCYERSPINFVEKFSCPIIL 602

[Close]
BLAST of Lsi04G015890 vs. NCBI nr
Match: gi|702360490|ref|XP_010059767.1| (PREDICTED: uncharacterized protein LOC104447756 [Eucalyptus grandis])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 26  LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINL 73
           + DL  + +  H FESHYI N+VG E+D YE  PINFVE FSCPI L
Sbjct: 556 IADLNMLRAEMHKFESHYIDNLVGSEKDCYERSPINFVEKFSCPIIL 602

[Close]
BLAST of Lsi04G015890 vs. NCBI nr
Match: gi|629100732|gb|KCW66201.1| (hypothetical protein EUGRSUZ_F00027 [Eucalyptus grandis])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 26  LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINL 73
           + DL  + +  H FESHYI N+VG E+D YE  PINFVE FSCPI L
Sbjct: 634 IADLNMLRAEMHKFESHYIDNLVGSEKDCYERSPINFVEKFSCPIIL 680

[Close]
BLAST of Lsi04G015890 vs. NCBI nr
Match: gi|659103160|ref|XP_008452505.1| (PREDICTED: uncharacterized protein LOC103493518 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 26  LVDLARVESRKHIFESHYIGNIVGGERDTYETLPINFVENFSCPINL 73
           + DL  + +  H FESHYI N+VG ERD YE  PINFVE FSCP+ L
Sbjct: 564 IADLRMLRAEMHKFESHYIDNLVGVERDYYERSPINFVEKFSCPLIL 610

The following BLAST results are available for this feature:
BLAST of Lsi04G015890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G015890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4T3_CUCSA4.3e-0861.70Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639050 PE=4 SV=1[more]
A0A059BIZ9_EUCGR1.6e-0759.57Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00027 PE=4 SV=1[more]
A0A059BJX9_EUCGR1.6e-0759.57Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00027 PE=4 SV=1[more]
A0A059BJB5_EUCGR1.6e-0759.57Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00027 PE=4 SV=1[more]
F6H1E0_VITVI4.8e-0757.45Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11140 PE=4 SV=... [more]
BLAST of Lsi04G015890 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G36210.12.7e-0947.76 alpha/beta-Hydrolases superfamily protein[more]
BLAST of Lsi04G015890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778696038|ref|XP_011654091.1|6.2e-0861.70PREDICTED: uncharacterized protein LOC101221995 [Cucumis sativus][more]
gi|629100733|gb|KCW66202.1|2.4e-0759.57hypothetical protein EUGRSUZ_F00027 [Eucalyptus grandis][more]
gi|702360490|ref|XP_010059767.1|2.4e-0759.57PREDICTED: uncharacterized protein LOC104447756 [Eucalyptus grandis][more]
gi|629100732|gb|KCW66201.1|2.4e-0759.57hypothetical protein EUGRSUZ_F00027 [Eucalyptus grandis][more]
gi|659103160|ref|XP_008452505.1|4.0e-0759.57PREDICTED: uncharacterized protein LOC103493518 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G015890.1Lsi04G015890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G015890MELO3C016729.2Melon (DHL92) v3.6.1lsimedB330
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G015890Cucumber (Chinese Long) v3cuclsiB129
Lsi04G015890Cucumber (Chinese Long) v3cuclsiB312
Lsi04G015890Cucumber (Chinese Long) v3cuclsiB484
Lsi04G015890Watermelon (97103) v2lsiwmbB257
Lsi04G015890Watermelon (97103) v2lsiwmbB288
Lsi04G015890Watermelon (97103) v2lsiwmbB304
Lsi04G015890Wax gourdlsiwgoB363
Lsi04G015890Wax gourdlsiwgoB394
Lsi04G015890Bottle gourd (USVL1VR-Ls)lsilsiB074
Lsi04G015890Bottle gourd (USVL1VR-Ls)lsilsiB148
Lsi04G015890Cucumber (Gy14) v1cgylsiB126
Lsi04G015890Cucumber (Gy14) v1cgylsiB186
Lsi04G015890Cucumber (Gy14) v1cgylsiB378
Lsi04G015890Cucurbita maxima (Rimu)cmalsiB024
Lsi04G015890Cucurbita maxima (Rimu)cmalsiB424
Lsi04G015890Cucurbita maxima (Rimu)cmalsiB613
Lsi04G015890Cucurbita maxima (Rimu)cmalsiB803
Lsi04G015890Cucurbita moschata (Rifu)cmolsiB012
Lsi04G015890Cucurbita moschata (Rifu)cmolsiB167
Lsi04G015890Cucurbita moschata (Rifu)cmolsiB412
Lsi04G015890Cucurbita moschata (Rifu)cmolsiB601
Lsi04G015890Cucurbita moschata (Rifu)cmolsiB715
Lsi04G015890Cucurbita moschata (Rifu)cmolsiB789
Lsi04G015890Cucurbita pepo (Zucchini)cpelsiB406
Lsi04G015890Cucurbita pepo (Zucchini)cpelsiB462
Lsi04G015890Cucurbita pepo (Zucchini)cpelsiB638
Lsi04G015890Cucurbita pepo (Zucchini)cpelsiB676
Lsi04G015890Wild cucumber (PI 183967)cpilsiB114
Lsi04G015890Wild cucumber (PI 183967)cpilsiB291
Lsi04G015890Wild cucumber (PI 183967)cpilsiB461
Lsi04G015890Cucumber (Chinese Long) v2culsiB117
Lsi04G015890Cucumber (Chinese Long) v2culsiB291
Lsi04G015890Cucumber (Chinese Long) v2culsiB454
Lsi04G015890Melon (DHL92) v3.5.1lsimeB301
Lsi04G015890Melon (DHL92) v3.5.1lsimeB314
Lsi04G015890Melon (DHL92) v3.5.1lsimeB333
Lsi04G015890Watermelon (Charleston Gray)lsiwcgB270
Lsi04G015890Watermelon (Charleston Gray)lsiwcgB287
Lsi04G015890Watermelon (Charleston Gray)lsiwcgB305
Lsi04G015890Watermelon (97103) v1lsiwmB293
Lsi04G015890Watermelon (97103) v1lsiwmB316
Lsi04G015890Watermelon (97103) v1lsiwmB324
Lsi04G015890Cucumber (Gy14) v2cgyblsiB104
Lsi04G015890Cucumber (Gy14) v2cgyblsiB269
Lsi04G015890Cucumber (Gy14) v2cgyblsiB422
Lsi04G015890Melon (DHL92) v3.6.1lsimedB315
Lsi04G015890Melon (DHL92) v3.6.1lsimedB349
Lsi04G015890Silver-seed gourdcarlsiB094
Lsi04G015890Silver-seed gourdcarlsiB708