Lsi04G012980 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G012980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Defensin
Location	chr04 : 20503558 .. 20504238 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAAATACAAAATTGCATAAACAATTGAAACAATAGAAATGGGCAAGATTGTGGGTAGCTCTGCAAAGATGTTGGTTGCTTTGCTCTTCCTTTTGGTCCTCATGCTTTCCATGAATGGTAAATTAAAATTTTGAAGGGTAGAAACTACCTAGAAAGAAACTTATTTTGTGTAGACATCATTTTTGTTTTTGTTTTTTAATTCTGTGATCACTTGGTGTGGCCACAGAAAAGCGAGGAGTGGTGGAGGCAAAGGTGTGCGAGAAGCGGAGCAAGACGTGGTCGGGATGGTGTGGGGACACGAGCCATTGCGACCGGCAATGCAAGAATTGGGAAGGTGCCAAACATGGAGCTTGCCATGCTCAATTTCCTGGAAGGGCTTGTTTTTGCTACTTCAACTGTTGAAAACCATGCAATAATCTTATGATCAAGATAATCTCCTTATATATATATATATATATCATAATTCCCCTTTTTAAGAATAAAAATTTGAGTTACTTGTTGTGTGTGTCTTGTGTGAAAGGGATCATCTTTATGTAATATTAGTTTTTAATTAATGTTTTTATGTGGTTGGAAAATTGAGTGTATTGTGGTTAATATGCTGCTATTTATTTTTGGCAGCTTGTTTGTGTGTTTCTTCTTCTTCATATCTGAATATTGAATAAAATTACTTTTGATTATTA

mRNA sequence

TGCAAATACAAAATTGCATAAACAATTGAAACAATAGAAATGGGCAAGATTGTGGGTAGCTCTGCAAAGATGTTGGTTGCTTTGCTCTTCCTTTTGGTCCTCATGCTTTCCATGAATGAAAAGCGAGGAGTGGTGGAGGCAAAGGTGTGCGAGAAGCGGAGCAAGACGTGGTCGGGATGGTGTGGGGACACGAGCCATTGCGACCGGCAATGCAAGAATTGGGAAGGTGCCAAACATGGAGCTTGCCATGCTCAATTTCCTGGAAGGGCTTGTTTTTGCTACTTCAACTGTTGAAAACCATGCAATAATCTTATGATCAAGATAATCTCCTTATATATATATATATATATCATAATTCCCCTTTTTAAGAATAAAAATTTGAGTTACTTGTTGTGTGTGTCTTGTGTGAAAGGGATCATCTTTATGTAATATTAGTTTTTAATTAATGTTTTTATGTGGTTGGAAAATTGAGTGTATTGTGGTTAATATGCTGCTATTTATTTTTGGCAGCTTGTTTGTGTGTTTCTTCTTCTTCATATCTGAATATTGAATAAAATTACTTTTGATTATTA

Coding sequence (CDS)

ATGGGCAAGATTGTGGGTAGCTCTGCAAAGATGTTGGTTGCTTTGCTCTTCCTTTTGGTCCTCATGCTTTCCATGAATGAAAAGCGAGGAGTGGTGGAGGCAAAGGTGTGCGAGAAGCGGAGCAAGACGTGGTCGGGATGGTGTGGGGACACGAGCCATTGCGACCGGCAATGCAAGAATTGGGAAGGTGCCAAACATGGAGCTTGCCATGCTCAATTTCCTGGAAGGGCTTGTTTTTGCTACTTCAACTGTTGA

Protein sequence

MGKIVGSSAKMLVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACHAQFPGRACFCYFNC

Homology

[Close]

BLAST of Lsi04G012980 vs. Swiss-Prot
Match: DEF19_ARATH (Defensin-like protein 19 OS=Arabidopsis thaliana GN=PDF1.4 PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-20
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 7  SSAKMLVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKH 66
          +S+  L+  L L + +++  E   V E ++CE+RSKTW+G+CG+T  CD QCK WE A H
Sbjct: 2  ASSYTLMLFLCLSIFLIASTEMMAV-EGRICERRSKTWTGFCGNTRGCDSQCKRWERASH 61

Query: 67 GACHAQFPGRACFCYFNC 85
          GACHAQFPG ACFCYFNC
Sbjct: 62 GACHAQFPGFACFCYFNC 78

[Close]

BLAST of Lsi04G012980 vs. Swiss-Prot
Match: DEF1_DAHME (Defensin-like protein 1 OS=Dahlia merckii PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-16
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 35 KVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACHAQFPGRACFCYFNC 85
          ++CEK SKTWSG CG+T HCD QCK+WEGA HGACH +     CFCYFNC
Sbjct: 1  ELCEKASKTWSGNCGNTGHCDNQCKSWEGAAHGACHVRNGKHMCFCYFNC 50

[Close]

BLAST of Lsi04G012980 vs. Swiss-Prot
Match: SF18_HELAN (Anther-specific protein SF18 (Fragment) OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-14
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 32 VEAKVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACHAQFPGRACFCYFNC 85
          V  K+CEK SKTW G C DT  CD++C +WEGAKHGACH +     CFCYF+C
Sbjct: 13 VNGKICEKPSKTWFGNCKDTDKCDKRCIDWEGAKHGACHQREAKHMCFCYFDC 65

[Close]

BLAST of Lsi04G012980 vs. Swiss-Prot
Match: DEF1_CLITE (Defensin-like protein 1 OS=Clitoria ternatea PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.3e-14
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 36 VCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACHAQFPGRACFCYFNC 85
          +CE+ S TW+G CG+T HCD QC+NWE AKHGACH +   + CFCYFNC
Sbjct: 2  LCERASLTWTGNCGNTGHCDTQCRNWESAKHGACHKRGNWK-CFCYFNC 49

[Close]

BLAST of Lsi04G012980 vs. Swiss-Prot
Match: DEF3_RAPSA (Defensin-like protein 3 OS=Raphanus sativus GN=AFP3 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.2e-14
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 12 LVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACHA 71
          +VALLF  +++ +  E   VVEAK+CE+ S TWSG CG+ + C  QC   EGA+HG+C+ 
Sbjct: 7  IVALLFAALVVFAAFEAPTVVEAKLCERSSGTWSGVCGNNNACKNQCIRLEGAQHGSCNY 66

Query: 72 QFPGRACFCYFNC 85
           FP   C CYF C
Sbjct: 67 VFPAHKCICYFPC 79

[Close]

BLAST of Lsi04G012980 vs. TrEMBL
Match: A0A0A0LFX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851940 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.6e-38
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 1  MGKIVGSSAKMLVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKN 60
          M K+VG+SAKM+VALLFLL LMLSMNEK+GVVEAKVCE+RSKTWSGWCG+T HCDRQCKN
Sbjct: 1  MAKVVGNSAKMIVALLFLLALMLSMNEKQGVVEAKVCERRSKTWSGWCGNTKHCDRQCKN 60

Query: 61 WEGAKHGACHAQFPGRACFCYFNC 85
          WEGA HGACHAQFPGRACFCYFNC
Sbjct: 61 WEGATHGACHAQFPGRACFCYFNC 84

[Close]

BLAST of Lsi04G012980 vs. TrEMBL
Match: A5AHS9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040160 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-21
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 1  MGKIVGSSAKMLVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKN 60
          M K++G    +  AL FL +  L ++ +  ++EAKVC++ SKTWSG+CG + +CDRQCKN
Sbjct: 1  MAKLLGYL--LSYALSFLTLFALLVSTEMVMLEAKVCQRPSKTWSGFCGSSKNCDRQCKN 60

Query: 61 WEGAKHGACHAQFPGRACFCYFNC 85
          WEGAKHGACHA+FPG ACFCYFNC
Sbjct: 61 WEGAKHGACHAKFPGVACFCYFNC 82

[Close]

BLAST of Lsi04G012980 vs. TrEMBL
Match: B9R7X8_RICCO (Low-molecular-weight cysteine-rich protein LCR78, putative OS=Ricinus communis GN=RCOM_1595110 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-21
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1


Query: 16 LFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACHAQFPG 75
          LF+ + +L   E + V +AKVC++RSKTWSG+CG T +CDRQCKNWEGA HGACHAQFPG
Sbjct: 12 LFIFLFLLVSTEMQ-VTQAKVCQRRSKTWSGFCGSTKNCDRQCKNWEGALHGACHAQFPG 71

Query: 76 RACFCYFNC 85
           ACFCYF C
Sbjct: 72 VACFCYFKC 79

[Close]

BLAST of Lsi04G012980 vs. TrEMBL
Match: A0A022QXX9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv11b019564mg PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-20
Identity = 42/70 (60.00%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 15 LLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACHAQFP 74
          +L +L+L + +N +  VVE+++CE+RSKTW+G+CG +++C+ QC+NWE A HGACHAQFP
Sbjct: 13 ILIVLLLFIMLNNEVMVVESRLCERRSKTWTGFCGSSNNCNNQCRNWERASHGACHAQFP 72

Query: 75 GRACFCYFNC 85
          G ACFCYFNC
Sbjct: 73 GFACFCYFNC 82

[Close]

BLAST of Lsi04G012980 vs. TrEMBL
Match: M5Y4P8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb024748mg PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 1  MGKIVGSSAKMLVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKN 60
          M K++       +  LFL + + S + +  +VEA++C++RSKTWSG+CG+T +C+RQC+N
Sbjct: 1  MAKLLSHPLFYPILFLFLFIFLASTDAEVAMVEARICQRRSKTWSGFCGNTGNCNRQCRN 60

Query: 61 WEGAKHGACHAQFPGRACFCYFNC 85
          WEGA  GACHAQ PG ACFCYF C
Sbjct: 61 WEGALRGACHAQSPGFACFCYFRC 84

[Close]

BLAST of Lsi04G012980 vs. TAIR10
Match: AT1G19610.1 (AT1G19610.1 Arabidopsis defensin-like protein)

HSP 1 Score: 99.8 bits (247), Expect = 8.7e-22
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 7  SSAKMLVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKH 66
          +S+  L+  L L + +++  E   V E ++CE+RSKTW+G+CG+T  CD QCK WE A H
Sbjct: 2  ASSYTLMLFLCLSIFLIASTEMMAV-EGRICERRSKTWTGFCGNTRGCDSQCKRWERASH 61

Query: 67 GACHAQFPGRACFCYFNC 85
          GACHAQFPG ACFCYFNC
Sbjct: 62 GACHAQFPGFACFCYFNC 78

[Close]

BLAST of Lsi04G012980 vs. TAIR10
Match: AT2G26010.1 (AT2G26010.1 plant defensin 1.3)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-13
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 12 LVALLFLLVLMLSMNEKRGVVEA-KVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACH 71
          ++  LF  +++ +  E   +VEA K+CEK S TWSG CG+++ C  QC N EGAKHG+C+
Sbjct: 7  IITFLFAALVLFAAFEAPIMVEAQKLCEKPSGTWSGVCGNSNACKNQCINLEGAKHGSCN 66

Query: 72 AQFPGRACFCYFNC 85
            FP   C CYF C
Sbjct: 67 YVFPAHKCICYFPC 80

[Close]

BLAST of Lsi04G012980 vs. TAIR10
Match: AT5G44420.1 (AT5G44420.1 plant defensin 1.2)

HSP 1 Score: 71.2 bits (173), Expect = 3.3e-13
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 12 LVALLFLLVLMLSMNEKRGVVEA-KVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACH 71
          ++ L+F  +++ +  +   +VEA K+CEK S TWSG CG+++ C  QC N EGAKHG+C+
Sbjct: 7  IITLIFAALVLFAAFDAPAMVEAQKLCEKPSGTWSGVCGNSNACKNQCINLEGAKHGSCN 66

Query: 72 AQFPGRACFCYFNC 85
            FP   C CY  C
Sbjct: 67 YVFPAHKCICYVPC 80

[Close]

BLAST of Lsi04G012980 vs. TAIR10
Match: AT5G44430.1 (AT5G44430.1 plant defensin 1.2C)

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-13
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1


Query: 12 LVALLFLLVLMLSMNEKRGVVEA-KVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACH 71
          ++  LF  +++ +  E   +VEA K+CEK S TWSG CG+++ C  QC N EGAKHG+C+
Sbjct: 7  IITFLFAALVLFAAFEAPTMVEAQKLCEKPSGTWSGVCGNSNACKNQCINLEGAKHGSCN 66

Query: 72 AQFPGRACFCYFNC 85
            FP   C CY  C
Sbjct: 67 YVFPAHKCICYVPC 80

[Close]

BLAST of Lsi04G012980 vs. TAIR10
Match: AT2G26020.1 (AT2G26020.1 plant defensin 1.2b)

HSP 1 Score: 68.6 bits (166), Expect = 2.2e-12
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1


Query: 12 LVALLFLLVLMLSMNEKRGVVEA-KVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACH 71
          ++  ++  +++ +  E   +VEA K+CEK S TWSG CG+++ C  QC N EGAKHG+C+
Sbjct: 7  IITFIYAALVLFAAFEVPTMVEAQKLCEKPSGTWSGVCGNSNACKNQCINLEGAKHGSCN 66

Query: 72 AQFPGRACFCYFNC 85
            FP   C CY  C
Sbjct: 67 YVFPAHKCICYVPC 80

[Close]

BLAST of Lsi04G012980 vs. NCBI nr
Match: gi|659109336|ref|XP_008454663.1| (PREDICTED: defensin-like protein 1 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 2.8e-38
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 1  MGKIVGSSAKMLVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKN 60
          M K+VG+SAKM+VA LFLL L LSMNEK+GVVEAKVCE+RSKTWSGWCGDT HCDRQCKN
Sbjct: 1  MAKVVGNSAKMIVAFLFLLALTLSMNEKQGVVEAKVCERRSKTWSGWCGDTKHCDRQCKN 60

Query: 61 WEGAKHGACHAQFPGRACFCYFNC 85
          WEGAKHGACHAQFPGRACFCYFNC
Sbjct: 61 WEGAKHGACHAQFPGRACFCYFNC 84

[Close]

BLAST of Lsi04G012980 vs. NCBI nr
Match: gi|449464786|ref|XP_004150110.1| (PREDICTED: defensin-like protein 1 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 3.7e-38
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 1  MGKIVGSSAKMLVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKN 60
          M K+VG+SAKM+VALLFLL LMLSMNEK+GVVEAKVCE+RSKTWSGWCG+T HCDRQCKN
Sbjct: 1  MAKVVGNSAKMIVALLFLLALMLSMNEKQGVVEAKVCERRSKTWSGWCGNTKHCDRQCKN 60

Query: 61 WEGAKHGACHAQFPGRACFCYFNC 85
          WEGA HGACHAQFPGRACFCYFNC
Sbjct: 61 WEGATHGACHAQFPGRACFCYFNC 84

[Close]

BLAST of Lsi04G012980 vs. NCBI nr
Match: gi|802594437|ref|XP_012071904.1| (PREDICTED: defensin-like protein 19 [Jatropha curcas])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 1  MGKIVGSSAKMLVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKN 60
          M K+  S+   L+  LFLLV     +++  V EAK+C++RSKTWSG+CGD   C+RQC+N
Sbjct: 1  MAKLHSSALCFLIIFLFLLV-----SKEMAVTEAKLCQRRSKTWSGFCGDPGKCNRQCRN 60

Query: 61 WEGAKHGACHAQFPGRACFCYFNC 85
          WEGA HGACHAQFPG ACFCYF C
Sbjct: 61 WEGASHGACHAQFPGFACFCYFKC 79

[Close]

BLAST of Lsi04G012980 vs. NCBI nr
Match: gi|147772111|emb|CAN64556.1| (hypothetical protein VITISV_040160 [Vitis vinifera])

HSP 1 Score: 109.0 bits (271), Expect = 4.1e-21
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 1  MGKIVGSSAKMLVALLFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKN 60
          M K++G    +  AL FL +  L ++ +  ++EAKVC++ SKTWSG+CG + +CDRQCKN
Sbjct: 1  MAKLLGYL--LSYALSFLTLFALLVSTEMVMLEAKVCQRPSKTWSGFCGSSKNCDRQCKN 60

Query: 61 WEGAKHGACHAQFPGRACFCYFNC 85
          WEGAKHGACHA+FPG ACFCYFNC
Sbjct: 61 WEGAKHGACHAKFPGVACFCYFNC 82

[Close]

BLAST of Lsi04G012980 vs. NCBI nr
Match: gi|255538712|ref|XP_002510421.1| (PREDICTED: defensin-like protein 19 [Ricinus communis])

HSP 1 Score: 108.6 bits (270), Expect = 5.3e-21
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1


Query: 16 LFLLVLMLSMNEKRGVVEAKVCEKRSKTWSGWCGDTSHCDRQCKNWEGAKHGACHAQFPG 75
          LF+ + +L   E + V +AKVC++RSKTWSG+CG T +CDRQCKNWEGA HGACHAQFPG
Sbjct: 12 LFIFLFLLVSTEMQ-VTQAKVCQRRSKTWSGFCGSTKNCDRQCKNWEGALHGACHAQFPG 71

Query: 76 RACFCYFNC 85
           ACFCYF C
Sbjct: 72 VACFCYFKC 79

The following BLAST results are available for this feature:

BLAST of Lsi04G012980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DEF19_ARATH	1.6e-20	56.41	Defensin-like protein 19 OS=Arabidopsis thaliana GN=PDF1.4 PE=3 SV=2	[more]
DEF1_DAHME	1.4e-16	68.00	Defensin-like protein 1 OS=Dahlia merckii PE=1 SV=1	[more]
SF18_HELAN	1.7e-14	60.38	Anther-specific protein SF18 (Fragment) OS=Helianthus annuus PE=2 SV=1	[more]
DEF1_CLITE	6.3e-14	63.27	Defensin-like protein 1 OS=Clitoria ternatea PE=1 SV=1	[more]
DEF3_RAPSA	8.2e-14	49.32	Defensin-like protein 3 OS=Raphanus sativus GN=AFP3 PE=3 SV=1	[more]

BLAST of Lsi04G012980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFX9_CUCSA	2.6e-38	88.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851940 PE=3 SV=1	[more]
A5AHS9_VITVI	2.8e-21	59.52	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040160 PE=3 SV=1	[more]
B9R7X8_RICCO	3.7e-21	68.12	Low-molecular-weight cysteine-rich protein LCR78, putative OS=Ricinus communis G...	[more]
A0A022QXX9_ERYGU	3.1e-20	60.00	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv11b019564mg PE=3 SV=1	[more]
M5Y4P8_PRUPE	1.2e-19	52.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb024748mg PE=3 SV=1	[more]

BLAST of Lsi04G012980 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19610.1	8.7e-22	56.41	Arabidopsis defensin-like protein	[more]
AT2G26010.1	1.1e-13	47.30	plant defensin 1.3	[more]
AT5G44420.1	3.3e-13	44.59	plant defensin 1.2	[more]
AT5G44430.1	4.3e-13	45.95	plant defensin 1.2C	[more]
AT2G26020.1	2.2e-12	43.24	plant defensin 1.2b	[more]

BLAST of Lsi04G012980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109336\|ref\|XP_008454663.1\|	2.8e-38	88.10	PREDICTED: defensin-like protein 1 [Cucumis melo]	[more]
gi\|449464786\|ref\|XP_004150110.1\|	3.7e-38	88.10	PREDICTED: defensin-like protein 1 [Cucumis sativus]	[more]
gi\|802594437\|ref\|XP_012071904.1\|	1.4e-21	59.52	PREDICTED: defensin-like protein 19 [Jatropha curcas]	[more]
gi\|147772111\|emb\|CAN64556.1\|	4.1e-21	59.52	hypothetical protein VITISV_040160 [Vitis vinifera]	[more]
gi\|255538712\|ref\|XP_002510421.1\|	5.3e-21	68.12	PREDICTED: defensin-like protein 19 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006952	defense response

Vocabulary: **INTERPRO**
Term	Definition
IPR008176	Defensin_plant
IPR003614	Scorpion_toxin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism
biological_process	GO:0006952	defense response
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G012980.1	Lsi04G012980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003614	Knottin, scorpion toxin-like	GENE3D	G3DSA:3.30.30.10		coord: 34..84 score: 6.5
IPR003614	Knottin, scorpion toxin-like	SMART	SM00505	gth_4	coord: 36..84 score: 2.3
IPR003614	Knottin, scorpion toxin-like	unknown	SSF57095	Scorpion toxin-like	coord: 34..84 score: 3.0
IPR008176	Defensin, plant	PROSITE	PS00940	GAMMA_THIONIN	coord: 35..58 scor
None	No IPR available	PANTHER	PTHR33147	FAMILY NOT NAMED	coord: 7..84 score: 2.3
None	No IPR available	PANTHER	PTHR33147:SF4	DEFENSIN-LIKE PROTEIN 13-RELATED	coord: 7..84 score: 2.3
None	No IPR available	PFAM	PF00304	Gamma-thionin	coord: 35..84 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G012980	Silver-seed gourd	carlsiB284
Lsi04G012980	Silver-seed gourd	carlsiB613
Lsi04G012980	Silver-seed gourd	carlsiB825
Lsi04G012980	Cucumber (Chinese Long) v3	cuclsiB056
Lsi04G012980	Cucumber (Chinese Long) v3	cuclsiB210
Lsi04G012980	Watermelon (97103) v2	lsiwmbB272
Lsi04G012980	Watermelon (97103) v2	lsiwmbB264
Lsi04G012980	Watermelon (97103) v2	lsiwmbB278
Lsi04G012980	Wax gourd	lsiwgoB378
Lsi04G012980	Wax gourd	lsiwgoB395
Lsi04G012980	Bottle gourd (USVL1VR-Ls)	lsilsiB098
Lsi04G012980	Bottle gourd (USVL1VR-Ls)	lsilsiB136
Lsi04G012980	Cucumber (Gy14) v1	cgylsiB196
Lsi04G012980	Cucumber (Gy14) v1	cgylsiB553
Lsi04G012980	Cucurbita maxima (Rimu)	cmalsiB026
Lsi04G012980	Cucurbita maxima (Rimu)	cmalsiB217
Lsi04G012980	Cucurbita maxima (Rimu)	cmalsiB382
Lsi04G012980	Cucurbita maxima (Rimu)	cmalsiB426
Lsi04G012980	Cucurbita maxima (Rimu)	cmalsiB685
Lsi04G012980	Cucurbita moschata (Rifu)	cmolsiB014
Lsi04G012980	Cucurbita moschata (Rifu)	cmolsiB205
Lsi04G012980	Cucurbita moschata (Rifu)	cmolsiB367
Lsi04G012980	Cucurbita moschata (Rifu)	cmolsiB414
Lsi04G012980	Cucurbita moschata (Rifu)	cmolsiB678
Lsi04G012980	Cucurbita pepo (Zucchini)	cpelsiB034
Lsi04G012980	Cucurbita pepo (Zucchini)	cpelsiB464
Lsi04G012980	Cucurbita pepo (Zucchini)	cpelsiB640
Lsi04G012980	Wild cucumber (PI 183967)	cpilsiB051
Lsi04G012980	Wild cucumber (PI 183967)	cpilsiB191
Lsi04G012980	Cucumber (Chinese Long) v2	culsiB050
Lsi04G012980	Cucumber (Chinese Long) v2	culsiB193
Lsi04G012980	Melon (DHL92) v3.5.1	lsimeB290
Lsi04G012980	Melon (DHL92) v3.5.1	lsimeB312
Lsi04G012980	Watermelon (Charleston Gray)	lsiwcgB265
Lsi04G012980	Watermelon (Charleston Gray)	lsiwcgB277
Lsi04G012980	Watermelon (97103) v1	lsiwmB299
Lsi04G012980	Watermelon (97103) v1	lsiwmB340
Lsi04G012980	Cucumber (Gy14) v2	cgyblsiB046
Lsi04G012980	Cucumber (Gy14) v2	cgyblsiB177
Lsi04G012980	Melon (DHL92) v3.6.1	lsimedB304
Lsi04G012980	Melon (DHL92) v3.6.1	lsimedB326