Lsi04G011540 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G011540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ATP-dependent DNA helicase family protein
Location	chr04 : 16191566 .. 16193592 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGGCTTTGAGAAGGTTTATGAGGTCTATATTCTTGTCCTTACATTTGATATAATTACATTTCTTAAAATACTTGGTCACGTATACGTGTACCGATAAAGTTTTCATACATTGTTCATTTTGTTAGAAATAGAAACAAGATTGCTAGTTGAAGAAACTCATTTCGTTTTCCCAAAAAAAAAAAAAAAAGATTGCTAGTTGAAACGTACTTGAGAGTAAATCGGTGGAAACATTATCTTTTATCTTATATTTAATTAGCGTATTGGATGCTTCTAATGTGTGTGGAAGTACTTTCAATAATAAATTTATAACTTCAAAATTTTATGTCTTGTATATTTATTTTCTTGAAAGGGTGGAGCTTTCGTTTATGTATTCTGTGGGGGAGGGAATAAAAATTTCATAAAGTCAAGATGCAGCATCTGTTCTAGAGTTAATTGTTGTTTTAAGTTCTGCCAGTTCTTGATTGAGATACTTTAGACCCGTGCATGCAGTATTACATATGTAAAGGATGCTGTTTAATATGGATGAGAGAATGATGATTGTTCGATACTTATCTTCTTGTTTGACAAAAACGATTTACATGATGATAGATGATGCTGGATGAGTTAGAAAAAGGTGGGAAGGTGTATCTCGTGTATCCAGTGATTGAGCAATCCGAACAGCTTCCTCAGCTTCATGCTGCTTCAGAAGGTCTTCAATCCATTTCTTACAGGTTTCAGGACTATAACTGTGGGTTGTTGCACGGGAAAATGAAGAGTGATGAGAAAGAGGAAGCTTTACGGAGATTTCGAAACGGAGATACACAGATACTACTTTCTACCCAAGTGATTGAGATTGGAGTGGACGTTCCTGATGCATCAATGATGGTTGTCATGAATGCTGAGAGGTTTGGAATTGCTCAGCTCCATCAACTAAGAGGACGAGTTGGACGTGGAATGAAGAAGTCTAGATGCATCTTGGTGGCATCTACTTCAAGCAGCTTAAGTCGCTTGAAGGTGTTGGAGAATTCGTCAGATGGTTTTCATTTGGCAGAAGTTGATCTTCTTTTACGTGGACCTGGTGATTTGCTTGGTAAAAAACAGTCGGGACATCTTCCAGAATTTCCAATTGCAAGATTGGAGGTAGATGGGAATATCTTGGAAGAAGCACATCTTGCCGCTTTGGTATGTTTTCATTTAGCTCCTATTTTTATTGCATGATTTATCAAGCATAGAATACAAACTTTATTTCTAGCTCCAAATTATGTACCATATTAGAAGTAAAAATTTGGTCAAACTATGAGTGTGATCGCTGCATTTTTCATGATTGTGTTTATTTAGTTAGTCCTCTTATATTATAAAAAGTTTGTGATAGGACTTTAAAGTTTTAGTGTGTATTTAGTTCTTATCTTTTTTTGACAAGTTTCCAAACTTTAAATTTTGTCTAATGAGTCTCCATTGTTAACTCCGTCAATTTAACTTACGTGACATTGATTCTTAATTTAAGAAGTTTCTAATAGGTCATTATACTTTCAATTTTGTTTGCAATGAGATTCTTGTCAACTTCATTCATGGAATATTTATGCCATTAAATGTCAAAGCTTACCCCAACTCGGCCCACATAATCTTTAAACAATATGATTAGTATACTACACAAGCATTCAATTGGTACGGTTAACGATTGAGACCTATTAGACACAAAATTGAAAGCTCAAAGACTTGTTAGAAACTTTTTGAAGTATACGGACCTATTTAACACAATTTTGAAAGTTGGAGCCCATTAATTTTTTTTTTTTTAAAATAGAGAGATTAAGCGGTCTTAATCTTACAAGTGTAGGAACCAAATTTTTAATACCAACTTAAATTTTGCATAGATAGTTTAATGTTTGATATCTTGGAATTACATTGGTTCAGAAGTATAACTTAGACAGCGGTTTACTCTCACATGCAGAAAATTTTAAGCATCTCTCATGATTTGGAGCAGTTTCCTGCCCTGAAGATGGAGCTTAGCATGAGGCAGCCACTTTGTCTACTTGGTGATTAG

mRNA sequence

ATGATGAAGGCTTTGAGAAGGTTTATGAGCGTATTGGATGCTTCTAATATGATGCTGGATGAGTTAGAAAAAGGTGGGAAGGTGTATCTCGTGTATCCAGTGATTGAGCAATCCGAACAGCTTCCTCAGCTTCATGCTGCTTCAGAAGGTCTTCAATCCATTTCTTACAGGTTTCAGGACTATAACTGTGGGTTGTTGCACGGGAAAATGAAGAGTGATGAGAAAGAGGAAGCTTTACGGAGATTTCGAAACGGAGATACACAGATACTACTTTCTACCCAAGTGATTGAGATTGGAGTGGACGTTCCTGATGCATCAATGATGGTTGTCATGAATGCTGAGAGGTTTGGAATTGCTCAGCTCCATCAACTAAGAGGACGAGTTGGACGTGGAATGAAGAAGTCTAGATGCATCTTGGTGGCATCTACTTCAAGCAGCTTAAGTCGCTTGAAGGTGTTGGAGAATTCGTCAGATGGTTTTCATTTGGCAGAAGTTGATCTTCTTTTACGTGGACCTGGTGATTTGCTTGGTAAAAAACAGTCGGGACATCTTCCAGAATTTCCAATTGCAAGATTGGAGGTAGATGGGAATATCTTGGAAGAAGCACATCTTGCCGCTTTGACAGCGGTTTACTCTCACATGCAGAAAATTTTAAGCATCTCTCATGATTTGGAGCAGTTTCCTGCCCTGAAGATGGAGCTTAGCATGAGGCAGCCACTTTGTCTACTTGGTGATTAG

Coding sequence (CDS)

ATGATGAAGGCTTTGAGAAGGTTTATGAGCGTATTGGATGCTTCTAATATGATGCTGGATGAGTTAGAAAAAGGTGGGAAGGTGTATCTCGTGTATCCAGTGATTGAGCAATCCGAACAGCTTCCTCAGCTTCATGCTGCTTCAGAAGGTCTTCAATCCATTTCTTACAGGTTTCAGGACTATAACTGTGGGTTGTTGCACGGGAAAATGAAGAGTGATGAGAAAGAGGAAGCTTTACGGAGATTTCGAAACGGAGATACACAGATACTACTTTCTACCCAAGTGATTGAGATTGGAGTGGACGTTCCTGATGCATCAATGATGGTTGTCATGAATGCTGAGAGGTTTGGAATTGCTCAGCTCCATCAACTAAGAGGACGAGTTGGACGTGGAATGAAGAAGTCTAGATGCATCTTGGTGGCATCTACTTCAAGCAGCTTAAGTCGCTTGAAGGTGTTGGAGAATTCGTCAGATGGTTTTCATTTGGCAGAAGTTGATCTTCTTTTACGTGGACCTGGTGATTTGCTTGGTAAAAAACAGTCGGGACATCTTCCAGAATTTCCAATTGCAAGATTGGAGGTAGATGGGAATATCTTGGAAGAAGCACATCTTGCCGCTTTGACAGCGGTTTACTCTCACATGCAGAAAATTTTAAGCATCTCTCATGATTTGGAGCAGTTTCCTGCCCTGAAGATGGAGCTTAGCATGAGGCAGCCACTTTGTCTACTTGGTGATTAG

Protein sequence

MMKALRRFMSVLDASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD

Homology

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BLAST of Lsi04G011540 vs. Swiss-Prot
Match: RECG_ARATH (ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana GN=RECG PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.7e-94
Identity = 170/235 (72.34%), Postives = 204/235 (86.81%), Query Frame = 1


Query: 11  VLDASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKM 70
           + +  +MML++L+ GG+VY+VYPVI+QSEQLPQL AAS  L+ ++ +F  YNCGLLHG+M
Sbjct: 747 IKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGRM 806

Query: 71  KSDEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR 130
           KSD+KEEAL +FR+G+TQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR
Sbjct: 807 KSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR 866

Query: 131 GMKKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIA 190
           G +KS+C+LV S+++SL RL +L  SSDGF+LA +DLLLRGPGDLLGKKQSGHLPEFP+A
Sbjct: 867 GTRKSKCLLVGSSTNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPEFPVA 926

Query: 191 RLEVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           RLE+DGN+L+EAH+AAL         +L  SHDLE+FPALK ELSMRQPLCLLGD
Sbjct: 927 RLEIDGNMLQEAHIAAL--------NVLGDSHDLEKFPALKAELSMRQPLCLLGD 973

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BLAST of Lsi04G011540 vs. Swiss-Prot
Match: RECG_SYNY3 (ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=recG PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.5e-47
Identity = 109/227 (48.02%), Postives = 148/227 (65.20%), Query Frame = 1


Query: 21  ELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEEALR 80
           E+ +G +VY+++P IE+SE+L    A  E        F ++N GLLHG++KS EKE AL 
Sbjct: 611 EVAQGRQVYIIFPAIEESEKLDIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALT 670

Query: 81  RFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCILV 140
            FR   T+I++ST VIE+GVDVP+A++MV+ NAERFG++QLHQLRGRVGRG  +S C+LV
Sbjct: 671 AFREKQTEIIVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLV 730

Query: 141 ASTSS--SLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDGNI 200
            ++ S  +  RL V+E S DGF +AE+DL LRGPG+ LG KQSG LP+F +A L  D  +
Sbjct: 731 TNSKSNDARQRLGVMEQSQDGFFIAEMDLRLRGPGEFLGTKQSG-LPDFALASLVEDQEV 790

Query: 201 LEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           L  A  AA T +            +LE  P LK++L  R    L G+
Sbjct: 791 LLLAREAAETMMVE--------DPNLEAHPDLKIKLVQRYEKLLGGE 828

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BLAST of Lsi04G011540 vs. Swiss-Prot
Match: RECG_STRPN (ATP-dependent DNA helicase RecG OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=recG PE=3 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 7.9e-41
Identity = 88/188 (46.81%), Postives = 134/188 (71.28%), Query Frame = 1


Query: 21  ELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEEALR 80
           E++KG +VY++ P+IE+SE L   +A +   +  ++        LLHG+MKSDEK++ ++
Sbjct: 456 EIQKGSQVYVISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQ 515

Query: 81  RFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCILV 140
            F+   T IL+ST VIE+GV+VP+A++M++M+A+RFG++QLHQLRGRVGRG K+S  +LV
Sbjct: 516 DFKERKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLV 575

Query: 141 AS--TSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDGNI 200
           A+  T S   R++++  +++GF LAE DL +RG G++ G +QSG LPEF +A +  D  I
Sbjct: 576 ANPKTDSGKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSG-LPEFQVADIIEDFPI 635

Query: 201 LEEAHLAA 207
           LEEA   A
Sbjct: 636 LEEARKVA 642

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BLAST of Lsi04G011540 vs. Swiss-Prot
Match: RECG_BACSU (ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168) GN=recG PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-40
Identity = 91/195 (46.67%), Postives = 134/195 (68.72%), Query Frame = 1


Query: 21  ELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQD-YNCGLLHGKMKSDEKEEAL 80
           EL++G + Y++ P+IE+S++L  +  A +    +S  F+  +N GL+HGK+ SDEK++ +
Sbjct: 462 ELKQGRQAYIICPLIEESDKL-DVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVM 521

Query: 81  RRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCIL 140
           R F     QIL+ST V+E+GV+VP+A++MV+ +A+RFG++QLHQLRGRVGRG  +S CIL
Sbjct: 522 REFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCIL 581

Query: 141 VASTSSSL--SRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDGN 200
           +A   S     R++++  ++DGF L+E DL LRGPGD  GKKQSG +PEF +A +  D  
Sbjct: 582 MADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSG-MPEFKVADMVHDYR 641

Query: 201 ILEEAHLAALTAVYS 213
            LE A   A   V S
Sbjct: 642 ALETARQDAANLVAS 654

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BLAST of Lsi04G011540 vs. Swiss-Prot
Match: RECG_STAAM (ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=recG PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-40
Identity = 85/197 (43.15%), Postives = 131/197 (66.50%), Query Frame = 1


Query: 18  MLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEE 77
           M  EL+KG + Y++ P+IE SE L  +       +S+   +     GLLHGK+ +DEK+E
Sbjct: 466 MTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDE 525

Query: 78  ALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRC 137
            +++F N +  +L+ST V+E+GV+VP+A+ M++ +A+RFG++ LHQLRGRVGR  ++S C
Sbjct: 526 VMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYC 585

Query: 138 ILVAS--TSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVD 197
           +L+AS  T + + R+ ++  ++DGF L+E DL +RGPGD  G KQSG LP+F +A L  D
Sbjct: 586 VLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSG-LPDFLVANLVED 645

Query: 198 GNILEEAHLAALTAVYS 213
             +LE A   A   + S
Sbjct: 646 YRMLEVARDEAAELIQS 661

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BLAST of Lsi04G011540 vs. TrEMBL
Match: F6HFI2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04880 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 3.1e-100
Identity = 189/233 (81.12%), Postives = 208/233 (89.27%), Query Frame = 1


Query: 13  DASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKS 72
           D   MMLDELE GGK+Y+VYPVIEQSEQLPQL AAS  L++IS RFQ Y CGLLHG+MKS
Sbjct: 772 DVYQMMLDELEVGGKIYIVYPVIEQSEQLPQLRAASTDLETISSRFQGYKCGLLHGRMKS 831

Query: 73  DEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGM 132
           DEK+EALRRFR+G+T ILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRG+
Sbjct: 832 DEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGV 891

Query: 133 KKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARL 192
           +KS+C+LV+ST+S L+RLKVLENSSDGF+LA +DLLLRGPGDLLGKKQSGHLPEFPIARL
Sbjct: 892 RKSKCLLVSSTASGLNRLKVLENSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARL 951

Query: 193 EVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           E+DGNIL+EAHLAAL        KIL  SHDLEQFP LK ELSMRQPLCLLGD
Sbjct: 952 EIDGNILQEAHLAAL--------KILGTSHDLEQFPELKAELSMRQPLCLLGD 996

[Close]

BLAST of Lsi04G011540 vs. TrEMBL
Match: A0A061E7H0_THECC (DEAD/DEAH box RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_010869 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 4.0e-100
Identity = 191/229 (83.41%), Postives = 207/229 (90.39%), Query Frame = 1


Query: 17   MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
            MML+ELE GG+VYLVYPVIEQSEQLPQL AAS  L++IS RFQDYNCGLLHG+MK DEKE
Sbjct: 809  MMLEELEAGGRVYLVYPVIEQSEQLPQLRAASADLETISDRFQDYNCGLLHGRMKGDEKE 868

Query: 77   EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
            EALRRFR+G+T ILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRG +KS+
Sbjct: 869  EALRRFRSGETDILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGTRKSK 928

Query: 137  CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
            CILVAST+ SL+RL VLE SSDGFHLA VDLLLRGPGDLLGKKQSGHLPEFPIARLE+DG
Sbjct: 929  CILVASTAGSLNRLNVLEKSSDGFHLASVDLLLRGPGDLLGKKQSGHLPEFPIARLEMDG 988

Query: 197  NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
            NIL+EAH+AAL        KILS SHDL++FPALK ELSMRQPLCLLGD
Sbjct: 989  NILQEAHVAAL--------KILSDSHDLDRFPALKAELSMRQPLCLLGD 1029

[Close]

BLAST of Lsi04G011540 vs. TrEMBL
Match: V4U6C7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017747mg PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.4e-99
Identity = 187/229 (81.66%), Postives = 208/229 (90.83%), Query Frame = 1


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+ GGKVYLVYPVIEQSEQLPQL AA+  L++IS RFQDY+CGLLHGKMKSDEK+
Sbjct: 654 MMLDELQSGGKVYLVYPVIEQSEQLPQLRAAASDLETISQRFQDYSCGLLHGKMKSDEKD 713

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFR+G+T ILLSTQVIEIGVDVPDASMM+VMNAERFGIAQLHQLRGRVGRG++KS+
Sbjct: 714 EALRRFRSGETHILLSTQVIEIGVDVPDASMMIVMNAERFGIAQLHQLRGRVGRGVRKSQ 773

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAS++SSLSRLKVLE SSDGF+LA +DLLLRGPGDLLGKKQSGHLPEFP+ARLE+DG
Sbjct: 774 CILVASSTSSLSRLKVLEKSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPVARLEIDG 833

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NIL+EAH+AAL         +LS SHDLEQFPALK ELSMRQPL L GD
Sbjct: 834 NILQEAHMAAL--------NVLSKSHDLEQFPALKAELSMRQPLSLFGD 874

[Close]

BLAST of Lsi04G011540 vs. TrEMBL
Match: B9HW67_POPTR (ATP-dependent DNA helicase family protein OS=Populus trichocarpa GN=POPTR_0010s12280g PE=4 SV=2)

HSP 1 Score: 368.6 bits (945), Expect = 5.8e-99
Identity = 188/233 (80.69%), Postives = 206/233 (88.41%), Query Frame = 1


Query: 13  DASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKS 72
           D   MM DELE GG+VYLVYPVIEQSEQLPQL AA+  L+ IS+RFQDYNCGLLHGKMKS
Sbjct: 664 DVYKMMRDELEAGGRVYLVYPVIEQSEQLPQLRAAAADLEVISHRFQDYNCGLLHGKMKS 723

Query: 73  DEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGM 132
           D+K+EAL+RFR+G T ILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRG 
Sbjct: 724 DDKDEALKRFRSGVTHILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGA 783

Query: 133 KKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARL 192
           +KS+C+LVAST+SSL RLKVLE SSDGF+LA +DLLLRGPGDLLGKKQSGHLPEFPIARL
Sbjct: 784 RKSKCLLVASTTSSLDRLKVLEKSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARL 843

Query: 193 EVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           E+DGNIL+EAH AAL        K+L  SHDLE+FPALK ELSMRQPLCLLGD
Sbjct: 844 EIDGNILQEAHAAAL--------KVLGESHDLERFPALKAELSMRQPLCLLGD 888

[Close]

BLAST of Lsi04G011540 vs. TrEMBL
Match: A0A0D2SI40_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G161600 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 5.8e-99
Identity = 187/229 (81.66%), Postives = 207/229 (90.39%), Query Frame = 1


Query: 17   MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
            MML+ELE GG++Y+VYPVIEQS+QLPQL AAS  L++IS +FQDYNCGLLHG+MK DEKE
Sbjct: 808  MMLEELEAGGRLYIVYPVIEQSDQLPQLRAASADLETISNQFQDYNCGLLHGRMKGDEKE 867

Query: 77   EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
            EALR+FR+G+T ILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRG KKS+
Sbjct: 868  EALRKFRSGETDILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGAKKSK 927

Query: 137  CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
            CILVAS+SSSL+RLKVLE SSDGFHLA VDL LRGPGDLLGKKQSGHLPEFPIARLE+DG
Sbjct: 928  CILVASSSSSLNRLKVLEKSSDGFHLASVDLRLRGPGDLLGKKQSGHLPEFPIARLEMDG 987

Query: 197  NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
            NIL+EAH+AAL        K+LS SHDLE FPALK ELSMRQPLC+LGD
Sbjct: 988  NILQEAHVAAL--------KVLSYSHDLELFPALKAELSMRQPLCILGD 1028

[Close]

BLAST of Lsi04G011540 vs. TAIR10
Match: AT2G01440.1 (AT2G01440.1 DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 345.5 bits (885), Expect = 2.7e-95
Identity = 170/235 (72.34%), Postives = 204/235 (86.81%), Query Frame = 1


Query: 11  VLDASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKM 70
           + +  +MML++L+ GG+VY+VYPVI+QSEQLPQL AAS  L+ ++ +F  YNCGLLHG+M
Sbjct: 747 IKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGRM 806

Query: 71  KSDEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR 130
           KSD+KEEAL +FR+G+TQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR
Sbjct: 807 KSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGR 866

Query: 131 GMKKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIA 190
           G +KS+C+LV S+++SL RL +L  SSDGF+LA +DLLLRGPGDLLGKKQSGHLPEFP+A
Sbjct: 867 GTRKSKCLLVGSSTNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPEFPVA 926

Query: 191 RLEVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           RLE+DGN+L+EAH+AAL         +L  SHDLE+FPALK ELSMRQPLCLLGD
Sbjct: 927 RLEIDGNMLQEAHIAAL--------NVLGDSHDLEKFPALKAELSMRQPLCLLGD 973

[Close]

BLAST of Lsi04G011540 vs. TAIR10
Match: AT3G02060.1 (AT3G02060.1 DEAD/DEAH box helicase, putative)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-24
Identity = 61/171 (35.67%), Postives = 99/171 (57.89%), Query Frame = 1


Query: 20  DELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEEAL 79
           +EL++GG+V+ V         LP++    E +  +   F D +  + HGK  S + EE +
Sbjct: 475 NELDRGGQVFYV---------LPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETM 534

Query: 80  RRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRCIL 139
            RF  G  +IL+ T ++E G+D+ +A+ +++ + ++FG+AQL+QLRGRVGR  K++   L
Sbjct: 535 ERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYL 594

Query: 140 VASTSSSLS-----RLKVLENSSD---GFHLAEVDLLLRGPGDLLGKKQSG 183
                S LS     RL  LE   +   GF LAE D+ +RG G + G++Q+G
Sbjct: 595 FYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTG 636

[Close]

BLAST of Lsi04G011540 vs. TAIR10
Match: AT3G22330.1 (AT3G22330.1 putative mitochondrial RNA helicase 2)

HSP 1 Score: 52.0 bits (123), Expect = 6.1e-07
Identity = 38/137 (27.74%), Postives = 63/137 (45.99%), Query Frame = 1


Query: 18  MLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKEE 77
           ++ E  KGGK  +       +++L    A S            + C  LHG +   ++E 
Sbjct: 342 LVTEHAKGGKCIVFTQTKRDADRLSYALARS------------FKCEALHGDISQSQRER 401

Query: 78  ALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSRC 137
            L  FR+G   IL++T V   G+DVP+  +++           +H+  GR GR  KK   
Sbjct: 402 TLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHR-TGRTGRAGKKGSA 461

Query: 138 ILVASTSSSLSRLKVLE 155
           IL+ S   S + +K++E
Sbjct: 462 ILIYSQDQSRA-VKIIE 464

[Close]

BLAST of Lsi04G011540 vs. TAIR10
Match: AT3G22310.1 (AT3G22310.1 putative mitochondrial RNA helicase 1)

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-06
Identity = 27/82 (32.93%), Postives = 43/82 (52.44%), Query Frame = 1


Query: 59  QDYNCGLLHGKMKSDEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGI 118
           + Y C  LHG +   ++E  L  FR+G+  IL++T V   G+DVP+  +++         
Sbjct: 383 KSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTE 442

Query: 119 AQLHQLRGRVGRGMKKSRCILV 141
             +H+  GR GR  KK   IL+
Sbjct: 443 TFVHR-TGRTGRAGKKGSAILI 463

[Close]

BLAST of Lsi04G011540 vs. NCBI nr
Match: gi|778730665|ref|XP_011659838.1| (PREDICTED: uncharacterized protein LOC101221994 [Cucumis sativus])

HSP 1 Score: 410.6 bits (1054), Expect = 1.9e-111
Identity = 212/229 (92.58%), Postives = 217/229 (94.76%), Query Frame = 1


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+KGGKVYLVYPVIEQS+QLPQL AASE LQSISYRFQ YNCGLLHGKMK DEKE
Sbjct: 755 MMLDELDKGGKVYLVYPVIEQSDQLPQLRAASEDLQSISYRFQGYNCGLLHGKMKKDEKE 814

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGDTQILLSTQVIE+GVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR
Sbjct: 815 EALRRFRNGDTQILLSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 874

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG
Sbjct: 875 CILVASTTSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 934

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILE+AHLAAL        KILSISHDLEQFPALKMELSMRQPLCLLGD
Sbjct: 935 NILEDAHLAAL--------KILSISHDLEQFPALKMELSMRQPLCLLGD 975

[Close]

BLAST of Lsi04G011540 vs. NCBI nr
Match: gi|659109546|ref|XP_008454766.1| (PREDICTED: uncharacterized protein LOC103495086 [Cucumis melo])

HSP 1 Score: 409.5 bits (1051), Expect = 4.3e-111
Identity = 211/229 (92.14%), Postives = 217/229 (94.76%), Query Frame = 1


Query: 17  MMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKSDEKE 76
           MMLDEL+KGGKVYLVYPVIEQS+QLPQLHAASEGLQSISYRFQ YNCGLLHGKMK DEKE
Sbjct: 754 MMLDELDKGGKVYLVYPVIEQSDQLPQLHAASEGLQSISYRFQGYNCGLLHGKMKKDEKE 813

Query: 77  EALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 136
           EALRRFRNGD QILLSTQVIE+GVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR
Sbjct: 814 EALRRFRNGDIQILLSTQVIEVGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGMKKSR 873

Query: 137 CILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARLEVDG 196
           CILVAST+SSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLG+KQSGHLPEFPIARLEVDG
Sbjct: 874 CILVASTTSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGRKQSGHLPEFPIARLEVDG 933

Query: 197 NILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           NILE+AHLAAL        KILSIS DLEQFPALKMELSMRQPLCLLGD
Sbjct: 934 NILEDAHLAAL--------KILSISDDLEQFPALKMELSMRQPLCLLGD 974

[Close]

BLAST of Lsi04G011540 vs. NCBI nr
Match: gi|297737705|emb|CBI26906.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 372.9 bits (956), Expect = 4.4e-100
Identity = 189/233 (81.12%), Postives = 208/233 (89.27%), Query Frame = 1


Query: 13  DASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKS 72
           D   MMLDELE GGK+Y+VYPVIEQSEQLPQL AAS  L++IS RFQ Y CGLLHG+MKS
Sbjct: 764 DVYQMMLDELEVGGKIYIVYPVIEQSEQLPQLRAASTDLETISSRFQGYKCGLLHGRMKS 823

Query: 73  DEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGM 132
           DEK+EALRRFR+G+T ILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRG+
Sbjct: 824 DEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGV 883

Query: 133 KKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARL 192
           +KS+C+LV+ST+S L+RLKVLENSSDGF+LA +DLLLRGPGDLLGKKQSGHLPEFPIARL
Sbjct: 884 RKSKCLLVSSTASGLNRLKVLENSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARL 943

Query: 193 EVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           E+DGNIL+EAHLAAL        KIL  SHDLEQFP LK ELSMRQPLCLLGD
Sbjct: 944 EIDGNILQEAHLAAL--------KILGTSHDLEQFPELKAELSMRQPLCLLGD 988

[Close]

BLAST of Lsi04G011540 vs. NCBI nr
Match: gi|731369655|ref|XP_010657359.1| (PREDICTED: uncharacterized protein LOC100252614 isoform X2 [Vitis vinifera])

HSP 1 Score: 372.9 bits (956), Expect = 4.4e-100
Identity = 189/233 (81.12%), Postives = 208/233 (89.27%), Query Frame = 1


Query: 13  DASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKS 72
           D   MMLDELE GGK+Y+VYPVIEQSEQLPQL AAS  L++IS RFQ Y CGLLHG+MKS
Sbjct: 742 DVYQMMLDELEVGGKIYIVYPVIEQSEQLPQLRAASTDLETISSRFQGYKCGLLHGRMKS 801

Query: 73  DEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGM 132
           DEK+EALRRFR+G+T ILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRG+
Sbjct: 802 DEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGV 861

Query: 133 KKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARL 192
           +KS+C+LV+ST+S L+RLKVLENSSDGF+LA +DLLLRGPGDLLGKKQSGHLPEFPIARL
Sbjct: 862 RKSKCLLVSSTASGLNRLKVLENSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARL 921

Query: 193 EVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
           E+DGNIL+EAHLAAL        KIL  SHDLEQFP LK ELSMRQPLCLLGD
Sbjct: 922 EIDGNILQEAHLAAL--------KILGTSHDLEQFPELKAELSMRQPLCLLGD 966

[Close]

BLAST of Lsi04G011540 vs. NCBI nr
Match: gi|731369649|ref|XP_010657288.1| (PREDICTED: uncharacterized protein LOC100252614 isoform X1 [Vitis vinifera])

HSP 1 Score: 372.9 bits (956), Expect = 4.4e-100
Identity = 189/233 (81.12%), Postives = 208/233 (89.27%), Query Frame = 1


Query: 13   DASNMMLDELEKGGKVYLVYPVIEQSEQLPQLHAASEGLQSISYRFQDYNCGLLHGKMKS 72
            D   MMLDELE GGK+Y+VYPVIEQSEQLPQL AAS  L++IS RFQ Y CGLLHG+MKS
Sbjct: 781  DVYQMMLDELEVGGKIYIVYPVIEQSEQLPQLRAASTDLETISSRFQGYKCGLLHGRMKS 840

Query: 73   DEKEEALRRFRNGDTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGM 132
            DEK+EALRRFR+G+T ILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRG+
Sbjct: 841  DEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGV 900

Query: 133  KKSRCILVASTSSSLSRLKVLENSSDGFHLAEVDLLLRGPGDLLGKKQSGHLPEFPIARL 192
            +KS+C+LV+ST+S L+RLKVLENSSDGF+LA +DLLLRGPGDLLGKKQSGHLPEFPIARL
Sbjct: 901  RKSKCLLVSSTASGLNRLKVLENSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARL 960

Query: 193  EVDGNILEEAHLAALTAVYSHMQKILSISHDLEQFPALKMELSMRQPLCLLGD 246
            E+DGNIL+EAHLAAL        KIL  SHDLEQFP LK ELSMRQPLCLLGD
Sbjct: 961  EIDGNILQEAHLAAL--------KILGTSHDLEQFPELKAELSMRQPLCLLGD 1005

The following BLAST results are available for this feature:

BLAST of Lsi04G011540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RECG_ARATH	4.7e-94	72.34	ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana G...	[more]
RECG_SYNY3	2.5e-47	48.02	ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]
RECG_STRPN	7.9e-41	46.81	ATP-dependent DNA helicase RecG OS=Streptococcus pneumoniae serotype 4 (strain A...	[more]
RECG_BACSU	1.0e-40	46.67	ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168) GN=recG PE=3 S...	[more]
RECG_STAAM	1.8e-40	43.15	ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain Mu50 / ATCC 700...	[more]

BLAST of Lsi04G011540 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HFI2_VITVI	3.1e-100	81.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04880 PE=4 SV=...	[more]
A0A061E7H0_THECC	4.0e-100	83.41	DEAD/DEAH box RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_01...	[more]
V4U6C7_9ROSI	3.4e-99	81.66	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017747mg PE=4 SV=1	[more]
B9HW67_POPTR	5.8e-99	80.69	ATP-dependent DNA helicase family protein OS=Populus trichocarpa GN=POPTR_0010s1...	[more]
A0A0D2SI40_GOSRA	5.8e-99	81.66	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G161600 PE=4 SV=1	[more]

BLAST of Lsi04G011540 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01440.1	2.7e-95	72.34	DEAD/DEAH box RNA helicase family protein	[more]
AT3G02060.1	1.4e-24	35.67	DEAD/DEAH box helicase, putative	[more]
AT3G22330.1	6.1e-07	27.74	putative mitochondrial RNA helicase 2	[more]
AT3G22310.1	1.8e-06	32.93	putative mitochondrial RNA helicase 1	[more]

BLAST of Lsi04G011540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730665\|ref\|XP_011659838.1\|	1.9e-111	92.58	PREDICTED: uncharacterized protein LOC101221994 [Cucumis sativus]	[more]
gi\|659109546\|ref\|XP_008454766.1\|	4.3e-111	92.14	PREDICTED: uncharacterized protein LOC103495086 [Cucumis melo]	[more]
gi\|297737705\|emb\|CBI26906.3\|	4.4e-100	81.12	unnamed protein product [Vitis vinifera]	[more]
gi\|731369655\|ref\|XP_010657359.1\|	4.4e-100	81.12	PREDICTED: uncharacterized protein LOC100252614 isoform X2 [Vitis vinifera]	[more]
gi\|731369649\|ref\|XP_010657288.1\|	4.4e-100	81.12	PREDICTED: uncharacterized protein LOC100252614 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR001650	Helicase_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0010501	RNA secondary structure unwinding
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004003	ATP-dependent DNA helicase activity
molecular_function	GO:0004004	ATP-dependent RNA helicase activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G011540.1	Lsi04G011540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 19..131 score: 2.8
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 35..132 score: 4.7
IPR001650	Helicase, C-terminal	PROFILE	PS51194	HELICASE_CTER	coord: 4..168 score: 15
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 16..178 score: 8.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..186 score: 5.57
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 16..166 score: 2.1
None	No IPR available	PANTHER	PTHR24031:SF50	DEAD/DEAH BOX RNA HELICASE FAMILY PROTEIN	coord: 16..166 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G011540	Cla001925	Watermelon (97103) v1	lsiwmB308
Lsi04G011540	MELO3C018322	Melon (DHL92) v3.5.1	lsimeB284
Lsi04G011540	ClCG07G006520	Watermelon (Charleston Gray)	lsiwcgB296

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G011540	Cucumber (Chinese Long) v3	cuclsiB388
Lsi04G011540	Watermelon (97103) v2	lsiwmbB297
Lsi04G011540	Wax gourd	lsiwgoB389
Lsi04G011540	Cucurbita maxima (Rimu)	cmalsiB679
Lsi04G011540	Cucurbita maxima (Rimu)	cmalsiB680
Lsi04G011540	Cucurbita moschata (Rifu)	cmolsiB672
Lsi04G011540	Cucurbita moschata (Rifu)	cmolsiB673
Lsi04G011540	Cucurbita pepo (Zucchini)	cpelsiB361
Lsi04G011540	Cucurbita pepo (Zucchini)	cpelsiB362
Lsi04G011540	Wild cucumber (PI 183967)	cpilsiB294
Lsi04G011540	Cucumber (Chinese Long) v2	culsiB244
Lsi04G011540	Watermelon (97103) v1	lsiwmB303
Lsi04G011540	Watermelon (97103) v1	lsiwmB311
Lsi04G011540	Cucumber (Gy14) v2	cgyblsiB332
Lsi04G011540	Melon (DHL92) v3.6.1	lsimedB298
Lsi04G011540	Silver-seed gourd	carlsiB159
Lsi04G011540	Silver-seed gourd	carlsiB610