Lsi04G010860 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G010860
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRing finger protein, putative
Locationchr04 : 13085665 .. 13087379 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGTTTCTCTAATACTTTGTTAAATTACGATTCAACTCAAAAAGTTTGATCAAATAGATTTGCGGTAAATTTAAAGCTTTATTCATATGGTTACTATCTTCCTCTCTTTGTTAATTTGGAAGTTAACCGAAGTCCGCACCAAGTAATTTGAATGAAAATAACAATGGGTTTTGATCGATGTAATCTTTTCTAATACTATATACAATTGTTATTACATCCAAAAGCTTAAGTTAATAAAGTTTAGTAACTGATAATAGAATTGTATCGCAATCTATCGCTAATATACACTAAGATTTTTTTATATTTATAAATAGTTTTGCTCATTTTTTTATATTTAAAAATAGTTGAAAAAAATCACTCAAGCACAAAAGAGTTCAATCCATCATCTTCTTTCAATCACTAAACTATCGACACAATCCGGGTCATATCAAAGAAGGAGATAATCTCTTTAAATAAACCAGACAACTGTAAAATATTGTTATCTACTTAGTTTACCGCATTCATAAAATCAACACGATCATATTGAACAACTAAAGAGGAAACCACAAGAACTATGTAGGGTTGTTGTTAAGATTCATGTGATGTTTCTTTTAAGGAACTAGTGGTTTTTCCTATTGAGGAAAAATAGAGATTCAAAATGGATTATTCTTTCTATGTCTTTTTGAATAGTTTTGTGCATAAAAGAAGTGAAAAGATGTATTAGGTATAACTTTTAATTGGCAAAAGCATATTGCAGATCCAAATAATTTGCCTATACTAGAAATAATATGGAGTTTGAAGGATATGCCAAATTAGGGGAATAATTTGACTATGAGAGTAAGTATGAACTATACCCTTCTTTTATAATTATTTAAACCTCGTTTGATAAATTAGGGTCCTATTTGGTAACATCTTATTTTTAGTTTTTTATCATATAAATATTTCTTTCACTTCTAAATTTTCATGCTTTGTTATCTACCTTTTATCAATTATTTCAAAAACAAAGTCAAAATTTGGAAACTAAAAAATGTAATTTTTAAAAATTTGTTTTCGTTTTTGAAATTTGGCTTAGAATTCAATTCTTGTATTTAAGAAAGACAGCAAATCATTGAAAGAAATTTAGAGGAAGTATGCTTAATTCTAAAAATCAAAAACAAAAAATGAAATGGTTACTTAACAGGACTAAATGTTTTGTTTTTTGTTTTTAAAAAATTGTGCTTTATTTTCAAATTTATTTATNAAGTCCCTCCGTCTGTTACCTGGCACTTCACAGAGCTCGACGATCGGCTCTTCCAAATCCGCGGCCGGACTTTCTTCTTCGTCGCCGTTTTATTCGCCGTCATCCTTCTTGTAACTTTTATCTTCCTTTACGCCCGATGGGTCTGCCGATTCCATCAACTCACCACCTTCTCCGCCGCTGTCCCCGGCGGCCGGTCGCCGAGGTCGCCGCCGCAGCTGGGGCTCGCCGCAACGGCGATTAACTGCCTTCCGATCACTCTATACAAGACACCAACGGCGGAGAAGGATCCACGCGCTGTGGCCGCCGCTGCAGGGGAGTGCCCCATTTGCTTGGGCGTGTTTGAGGATGGGGAGAAGGTGAAGATTCTGCCGCCGTGCCGCCATTGTTACCATTCCGAGTGCGTTGACCGGTGGCTCCGATCGCAGTCGAGCTGCCCGCTTTGCCGTGTCTCTCCCTGTATCGATACCTCGAACAATCTTCAAATTGTTTGA

mRNA sequence

ATGAAGCTCGACGATCGGCTCTTCCAAATCCGCGGCCGGACTTTCTTCTTCGTCGCCGTTTTATTCGCCGTCATCCTTCTTGTAACTTTTATCTTCCTTTACGCCCGATGGGTCTGCCGATTCCATCAACTCACCACCTTCTCCGCCGCTGTCCCCGGCGGCCGGTCGCCGAGGTCGCCGCCGCAGCTGGGGCTCGCCGCAACGGCGATTAACTGCCTTCCGATCACTCTATACAAGACACCAACGGCGGAGAAGGATCCACGCGCTGTGGCCGCCGCTGCAGGGGAGTGCCCCATTTGCTTGGGCGTGTTTGAGGATGGGGAGAAGGTGAAGATTCTGCCGCCGTGCCGCCATTGTTACCATTCCGAGTGCGTTGACCGGTGGCTCCGATCGCAGTCGAGCTGCCCGCTTTGCCGTGTCTCTCCCTGTATCGATACCTCGAACAATCTTCAAATTGTTTGA

Coding sequence (CDS)

ATGAAGCTCGACGATCGGCTCTTCCAAATCCGCGGCCGGACTTTCTTCTTCGTCGCCGTTTTATTCGCCGTCATCCTTCTTGTAACTTTTATCTTCCTTTACGCCCGATGGGTCTGCCGATTCCATCAACTCACCACCTTCTCCGCCGCTGTCCCCGGCGGCCGGTCGCCGAGGTCGCCGCCGCAGCTGGGGCTCGCCGCAACGGCGATTAACTGCCTTCCGATCACTCTATACAAGACACCAACGGCGGAGAAGGATCCACGCGCTGTGGCCGCCGCTGCAGGGGAGTGCCCCATTTGCTTGGGCGTGTTTGAGGATGGGGAGAAGGTGAAGATTCTGCCGCCGTGCCGCCATTGTTACCATTCCGAGTGCGTTGACCGGTGGCTCCGATCGCAGTCGAGCTGCCCGCTTTGCCGTGTCTCTCCCTGTATCGATACCTCGAACAATCTTCAAATTGTTTGA

Protein sequence

MKLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV
Homology
[Close]
BLAST of Lsi04G010860 vs. Swiss-Prot
Match: ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-27
Identity = 68/145 (46.90%), Postives = 85/145 (58.62%), Query Frame = 1 

Query: 4   DDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQL 63
           DDR FQI GRT FF   LF+V+L    + LY    C         A+ P  R  R     
Sbjct: 22  DDRNFQIHGRTLFFALALFSVVLFFALLTLYIHRNCLPRDSINLHASSPD-RLTRCRSG- 81

Query: 64  GLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSE 123
           GL    I  LP+ L +   AE++         EC ICLG FE+GEK+K+LPPC HCYH E
Sbjct: 82  GLDPAEIRSLPVVLCRRERAEEEEEK------ECCICLGGFEEGEKMKVLPPCSHCYHCE 141

Query: 124 CVDRWLRSQSSCPLCRVSPCIDTSN 149
           CVDRWL+++SSCPLCRVS  +D+S+
Sbjct: 142 CVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]
BLAST of Lsi04G010860 vs. Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 77  LYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCP 136
           L K P AE     V  AA EC ICLG F DGE+V++LPPC H +H  C+D WL S SSCP
Sbjct: 85  LKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCP 144

Query: 137 LCRVS 142
            CR S
Sbjct: 145 NCRHS 149

[Close]
BLAST of Lsi04G010860 vs. Swiss-Prot
Match: ATL15_ARATH (E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 51/141 (36.17%), Postives = 70/141 (49.65%), Query Frame = 1 

Query: 8   FQIRGRTFFFVAVLFAVILLVTFIF------LYARWVCRFHQLTTFSAAVPGG-RSPRSP 67
           F   GRT F       +I+LV+  F      +Y R  C  H L   S   PG   + R  
Sbjct: 27  FDDEGRTSFSPTTAIIMIVLVSVFFALGCISVYMRR-CLQHALGMDSGGGPGNWLNVRQT 86

Query: 68  PQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCY 127
            + GL A+ I   P   Y T    +    +   A ECP+CL  FED E ++++P C H +
Sbjct: 87  TEPGLDASVIETFPTFPYSTVKTLR----IGKEALECPVCLNEFEDDETLRLIPQCCHVF 146

Query: 128 HSECVDRWLRSQSSCPLCRVS 142
           H  C+D WLRSQ++CPLCR +
Sbjct: 147 HPGCIDAWLRSQTTCPLCRAN 162

[Close]
BLAST of Lsi04G010860 vs. Swiss-Prot
Match: ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 46/135 (34.07%), Postives = 64/135 (47.41%), Query Frame = 1 

Query: 18  VAVLFAVILLVTFIFLYARWVC----RFH---------QLTTFSAAVPGGRSPRSPPQLG 77
           + +LF V++L+ F+ LYARW      R H             F  A P   +       G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 78  LAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSEC 137
           L    I  LP+  +   T  KDP        EC +CL  FE+ E  ++LP C+H +H +C
Sbjct: 95  LDPNVIKSLPVFTFSDET-HKDPI-------ECAVCLSEFEESETGRVLPNCQHTFHVDC 154

Query: 138 VDRWLRSQSSCPLCR 140
           +D W  S S+CPLCR
Sbjct: 155 IDMWFHSHSTCPLCR 161

[Close]
BLAST of Lsi04G010860 vs. Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1 

Query: 64  GLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSE 123
           GL   A+  +P+ LY +   +         A EC ICLG FEDGEKV++LP C H +H  
Sbjct: 88  GLKKQALKQIPVGLYGSGIIDMK-------ATECLICLGDFEDGEKVRVLPKCNHGFHVR 147

Query: 124 CVDRWLRSQSSCPLCRVSPCIDTSNNLQI 153
           C+D WL S+SSCP CR S  ++  + + +
Sbjct: 148 CIDTWLLSRSSCPTCRQSLLLEQPSPMAV 169

[Close]
BLAST of Lsi04G010860 vs. TrEMBL
Match: A0A0A0KLZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G210015 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.8e-64
Identity = 126/153 (82.35%), Postives = 132/153 (86.27%), Query Frame = 1 

Query: 2   KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP 61
           +LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA +P  R P SPP
Sbjct: 16  ELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAPLPVHRLPSSPP 75

Query: 62  QLGLAATAINCLPITLYKTPTAEKD-PRAVAAAAGECPICLGVFEDGEKVKILPPCRHCY 121
           Q GL AT I  LPITLYK P A++D P A A  AGEC ICLGVFEDGEKVKILPPCRHCY
Sbjct: 76  QQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFEDGEKVKILPPCRHCY 135

Query: 122 HSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV 154
           HSECVDRWLRS SSCPLCRVS CID SNNL++V
Sbjct: 136 HSECVDRWLRSHSSCPLCRVSLCIDPSNNLEMV 168

[Close]
BLAST of Lsi04G010860 vs. TrEMBL
Match: W9SF32_9ROSA (RING-H2 finger protein ATL66 OS=Morus notabilis GN=L484_000021 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-35
Identity = 75/144 (52.08%), Postives = 94/144 (65.28%), Query Frame = 1 

Query: 3   LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQ 62
           LDDR FQIRG+T FF+ V+F+ +L+VT + LYARW CR+  +     A     +P +PP 
Sbjct: 17  LDDRSFQIRGKTLFFIVVIFSALLVVTLLLLYARWACRYRHVAASPYASQPQTAPPNPPP 76

Query: 63  LGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHS 122
            GL A AI  LP+  +K+  +          A EC ICLGVFEDGEKVK+LP C HCYH 
Sbjct: 77  QGLDAVAIKGLPVISHKSAPSSD-------MAAECSICLGVFEDGEKVKVLPGCSHCYHP 136

Query: 123 ECVDRWLRSQSSCPLCRVSPCIDT 147
           ECVDRWL +Q SCPLCR S  +D+
Sbjct: 137 ECVDRWLSAQPSCPLCRASLRVDS 153

[Close]
BLAST of Lsi04G010860 vs. TrEMBL
Match: M5XL13_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012636mg PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.0e-34
Identity = 78/137 (56.93%), Postives = 89/137 (64.96%), Query Frame = 1 

Query: 3   LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQ 62
           LDD  F IRGRT FFV VLF V+LLVT + LYARWVC  H  T+ S+  P    P+S P+
Sbjct: 18  LDDTQFHIRGRTLFFVVVLFTVVLLVTVLLLYARWVCHSHPNTSSSSNTPPNAPPQSQPK 77

Query: 63  LGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHS 122
            GL  T I  LPI LY     + +        GEC ICLGVF DGEKVK+LP C H YHS
Sbjct: 78  -GLDPTVIRALPIVLYHQSVRDLE---AGGGGGECCICLGVFGDGEKVKVLPNCSHSYHS 137

Query: 123 ECVDRWLRSQSSCPLCR 140
           ECVD WL ++SSCPLCR
Sbjct: 138 ECVDTWLATRSSCPLCR 150

[Close]
BLAST of Lsi04G010860 vs. TrEMBL
Match: A0A118K606_CYNCS (Zinc finger, RING/FYVE/PHD-type OS=Cynara cardunculus var. scolymus GN=Ccrd_011673 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.1e-34
Identity = 80/145 (55.17%), Postives = 99/145 (68.28%), Query Frame = 1 

Query: 2   KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP 61
           +LDD+ FQIRGRT FF+ VLFAVILLVT +FLYARW+CR    +  SAAV       S P
Sbjct: 15  ELDDKNFQIRGRTLFFIIVLFAVILLVTLLFLYARWICRSSSAS--SAAVSQHIQRFSRP 74

Query: 62  QLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYH 121
           Q GL + AI+ LPITL++ P+             EC ICLGVFE+GEKVK+LP C H YH
Sbjct: 75  Q-GLDSAAIDSLPITLHQRPSTSSTDSL------ECCICLGVFEEGEKVKVLPKCSHAYH 134

Query: 122 SECVDRWLRSQSSCPLCRVSPCIDT 147
            ECVD+WL + SSCP+CR +  +D+
Sbjct: 135 CECVDKWLTTHSSCPICRAALLVDS 150

[Close]
BLAST of Lsi04G010860 vs. TrEMBL
Match: A0A068V266_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039150001 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 77/143 (53.85%), Postives = 94/143 (65.73%), Query Frame = 1 

Query: 4   DDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQL 63
           DD  FQIRGRT FF  VLF VIL +T I+LYARWVCR    ++    +P   S    PQ 
Sbjct: 110 DDSNFQIRGRTLFFAVVLFCVILFITLIYLYARWVCRLPPFSSRPRLLPDAPSGPPAPQ- 169

Query: 64  GLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSE 123
           GL   AI+ LPI L++  +A  +        GEC ICLG+F+DGEKVK+LP C H YHSE
Sbjct: 170 GLDLNAISNLPIILHRASSANPNE-------GECAICLGIFQDGEKVKVLPDCNHRYHSE 229

Query: 124 CVDRWLRSQSSCPLCRVSPCIDT 147
           C+D WLR+QSSCPLCR S  +D+
Sbjct: 230 CIDEWLRTQSSCPLCRASLRVDS 244

[Close]
BLAST of Lsi04G010860 vs. TAIR10
Match: AT3G11110.1 (AT3G11110.1 RING/U-box superfamily protein)

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-28
Identity = 68/145 (46.90%), Postives = 85/145 (58.62%), Query Frame = 1 

Query: 4   DDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPPQL 63
           DDR FQI GRT FF   LF+V+L    + LY    C         A+ P  R  R     
Sbjct: 22  DDRNFQIHGRTLFFALALFSVVLFFALLTLYIHRNCLPRDSINLHASSPD-RLTRCRSG- 81

Query: 64  GLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSE 123
           GL    I  LP+ L +   AE++         EC ICLG FE+GEK+K+LPPC HCYH E
Sbjct: 82  GLDPAEIRSLPVVLCRRERAEEEEEK------ECCICLGGFEEGEKMKVLPPCSHCYHCE 141

Query: 124 CVDRWLRSQSSCPLCRVSPCIDTSN 149
           CVDRWL+++SSCPLCRVS  +D+S+
Sbjct: 142 CVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]
BLAST of Lsi04G010860 vs. TAIR10
Match: AT5G01880.1 (AT5G01880.1 RING/U-box superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 9.0e-17
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 1 

Query: 77  LYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSECVDRWLRSQSSCP 136
           L K P AE     V  AA EC ICLG F DGE+V++LPPC H +H  C+D WL S SSCP
Sbjct: 85  LKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCP 144

Query: 137 LCRVS 142
            CR S
Sbjct: 145 NCRHS 149

[Close]
BLAST of Lsi04G010860 vs. TAIR10
Match: AT1G22500.1 (AT1G22500.1 RING/U-box superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 7.6e-16
Identity = 51/141 (36.17%), Postives = 70/141 (49.65%), Query Frame = 1 

Query: 8   FQIRGRTFFFVAVLFAVILLVTFIF------LYARWVCRFHQLTTFSAAVPGG-RSPRSP 67
           F   GRT F       +I+LV+  F      +Y R  C  H L   S   PG   + R  
Sbjct: 27  FDDEGRTSFSPTTAIIMIVLVSVFFALGCISVYMRR-CLQHALGMDSGGGPGNWLNVRQT 86

Query: 68  PQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCY 127
            + GL A+ I   P   Y T    +    +   A ECP+CL  FED E ++++P C H +
Sbjct: 87  TEPGLDASVIETFPTFPYSTVKTLR----IGKEALECPVCLNEFEDDETLRLIPQCCHVF 146

Query: 128 HSECVDRWLRSQSSCPLCRVS 142
           H  C+D WLRSQ++CPLCR +
Sbjct: 147 HPGCIDAWLRSQTTCPLCRAN 162

[Close]
BLAST of Lsi04G010860 vs. TAIR10
Match: AT3G10910.1 (AT3G10910.1 RING/U-box superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1 

Query: 64  GLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSE 123
           GL   A+  +P+ LY +   +         A EC ICLG FEDGEKV++LP C H +H  
Sbjct: 88  GLKKQALKQIPVGLYGSGIIDMK-------ATECLICLGDFEDGEKVRVLPKCNHGFHVR 147

Query: 124 CVDRWLRSQSSCPLCRVSPCIDTSNNLQI 153
           C+D WL S+SSCP CR S  ++  + + +
Sbjct: 148 CIDTWLLSRSSCPTCRQSLLLEQPSPMAV 169

[Close]
BLAST of Lsi04G010860 vs. TAIR10
Match: AT3G16720.1 (AT3G16720.1 TOXICOS EN LEVADURA 2)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 46/135 (34.07%), Postives = 64/135 (47.41%), Query Frame = 1 

Query: 18  VAVLFAVILLVTFIFLYARWVC----RFH---------QLTTFSAAVPGGRSPRSPPQLG 77
           + +LF V++L+ F+ LYARW      R H             F  A P   +       G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 78  LAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYHSEC 137
           L    I  LP+  +   T  KDP        EC +CL  FE+ E  ++LP C+H +H +C
Sbjct: 95  LDPNVIKSLPVFTFSDET-HKDPI-------ECAVCLSEFEESETGRVLPNCQHTFHVDC 154

Query: 138 VDRWLRSQSSCPLCR 140
           +D W  S S+CPLCR
Sbjct: 155 IDMWFHSHSTCPLCR 161

[Close]
BLAST of Lsi04G010860 vs. NCBI nr
Match: gi|659109653|ref|XP_008454808.1| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis melo])

HSP 1 Score: 264.2 bits (674), Expect = 1.4e-67
Identity = 130/153 (84.97%), Postives = 137/153 (89.54%), Query Frame = 1 

Query: 2   KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP 61
           +LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA++P  R PRSPP
Sbjct: 16  ELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSASLPVRRQPRSPP 75

Query: 62  QL-GLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCY 121
           Q  GL ATAIN LPITLYK P AE+DP A A+ AGEC ICLGVFEDGEKVKILPPCRHCY
Sbjct: 76  QQQGLGATAINSLPITLYKAPAAEEDPPAAASDAGECSICLGVFEDGEKVKILPPCRHCY 135

Query: 122 HSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV 154
           HSECVDRWLRS SSCPLCRVS CID SNNL++V
Sbjct: 136 HSECVDRWLRSHSSCPLCRVSLCIDPSNNLEMV 168

[Close]
BLAST of Lsi04G010860 vs. NCBI nr
Match: gi|700195498|gb|KGN50675.1| (hypothetical protein Csa_5G210015 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 5.4e-64
Identity = 126/153 (82.35%), Postives = 132/153 (86.27%), Query Frame = 1 

Query: 2   KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP 61
           +LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA +P  R P SPP
Sbjct: 16  ELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAPLPVHRLPSSPP 75

Query: 62  QLGLAATAINCLPITLYKTPTAEKD-PRAVAAAAGECPICLGVFEDGEKVKILPPCRHCY 121
           Q GL AT I  LPITLYK P A++D P A A  AGEC ICLGVFEDGEKVKILPPCRHCY
Sbjct: 76  QQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFEDGEKVKILPPCRHCY 135

Query: 122 HSECVDRWLRSQSSCPLCRVSPCIDTSNNLQIV 154
           HSECVDRWLRS SSCPLCRVS CID SNNL++V
Sbjct: 136 HSECVDRWLRSHSSCPLCRVSLCIDPSNNLEMV 168

[Close]
BLAST of Lsi04G010860 vs. NCBI nr
Match: gi|778708415|ref|XP_004148199.2| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.6e-63
Identity = 125/152 (82.24%), Postives = 131/152 (86.18%), Query Frame = 1 

Query: 2   KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP 61
           +LDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA +P  R P SPP
Sbjct: 16  ELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAPLPVHRLPSSPP 75

Query: 62  QLGLAATAINCLPITLYKTPTAEKD-PRAVAAAAGECPICLGVFEDGEKVKILPPCRHCY 121
           Q GL AT I  LPITLYK P A++D P A A  AGEC ICLGVFEDGEKVKILPPCRHCY
Sbjct: 76  QQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFEDGEKVKILPPCRHCY 135

Query: 122 HSECVDRWLRSQSSCPLCRVSPCIDTSNNLQI 153
           HSECVDRWLRS SSCPLCRVS CID SNNL++
Sbjct: 136 HSECVDRWLRSHSSCPLCRVSLCIDPSNNLEM 167

[Close]
BLAST of Lsi04G010860 vs. NCBI nr
Match: gi|698500514|ref|XP_009796011.1| (PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana sylvestris])

HSP 1 Score: 160.6 bits (405), Expect = 2.2e-36
Identity = 80/146 (54.79%), Postives = 100/146 (68.49%), Query Frame = 1 

Query: 2   KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRSPP 61
           + DD  FQIRGRT FFV VLFA+IL+ T +FLYARWVC+F   ++  AA         PP
Sbjct: 34  EFDDNDFQIRGRTLFFVVVLFAIILIATLLFLYARWVCKFRSPSSAEAARSSHAPSVPPP 93

Query: 62  QLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHCYH 121
             GL    I+ LPI L+++     D R   AA  EC ICLG+F+DG+KVK+LP C+HCYH
Sbjct: 94  PQGLDPAFIDNLPIILHRS----SDCRGNTAAEVECCICLGIFQDGDKVKVLPSCQHCYH 153

Query: 122 SECVDRWLRSQSSCPLCRVSPCIDTS 148
           SECVD+WLR+QSSCPLCR S   D++
Sbjct: 154 SECVDKWLRNQSSCPLCRASIQFDSA 175

[Close]
BLAST of Lsi04G010860 vs. NCBI nr
Match: gi|697113112|ref|XP_009610438.1| (PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana tomentosiformis])

HSP 1 Score: 159.5 bits (402), Expect = 4.8e-36
Identity = 82/142 (57.75%), Postives = 99/142 (69.72%), Query Frame = 1 

Query: 2   KLDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRSPRS-- 61
           + DD  FQIRGRT FFV VLFA+IL+ T +FLYARWVC+F    +  AA     +P S  
Sbjct: 34  EFDDNDFQIRGRTLFFVVVLFAIILIATLLFLYARWVCKFRSPLSAEAA-RSAHAPSSVP 93

Query: 62  PPQLGLAATAINCLPITLYKTPTAEKDPRAVAAAAGECPICLGVFEDGEKVKILPPCRHC 121
           PP  GL    I+ LPI L++T     D R   AA  EC ICLG+F+DG+KVK+LP C+HC
Sbjct: 94  PPPQGLDPAFIDNLPIILHRT----SDCRGNTAAEVECCICLGIFQDGDKVKVLPSCQHC 153

Query: 122 YHSECVDRWLRSQSSCPLCRVS 142
           YHSECVD+WLR+QSSCPLCR S
Sbjct: 154 YHSECVDKWLRNQSSCPLCRAS 170

The following BLAST results are available for this feature:
BLAST of Lsi04G010860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL66_ARATH3.1e-2746.90RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1[more]
ATL74_ARATH1.6e-1556.92RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1[more]
ATL15_ARATH1.4e-1436.17E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1[more]
ATL2_ARATH3.0e-1434.07RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2[more]
ATL72_ARATH3.0e-1441.57RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1[more]
BLAST of Lsi04G010860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLZ2_CUCSA3.8e-6482.35Uncharacterized protein OS=Cucumis sativus GN=Csa_5G210015 PE=4 SV=1[more]
W9SF32_9ROSA8.2e-3552.08RING-H2 finger protein ATL66 OS=Morus notabilis GN=L484_000021 PE=4 SV=1[more]
M5XL13_PRUPE7.0e-3456.93Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012636mg PE=4 SV=1[more]
A0A118K606_CYNCS9.1e-3455.17Zinc finger, RING/FYVE/PHD-type OS=Cynara cardunculus var. scolymus GN=Ccrd_0116... [more]
A0A068V266_COFCA1.2e-3353.85Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039150001 PE=4 SV=1[more]
BLAST of Lsi04G010860 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G11110.11.8e-2846.90 RING/U-box superfamily protein[more]
AT5G01880.19.0e-1756.92 RING/U-box superfamily protein[more]
AT1G22500.17.6e-1636.17 RING/U-box superfamily protein[more]
AT3G10910.11.7e-1541.57 RING/U-box superfamily protein[more]
AT3G16720.11.7e-1534.07 TOXICOS EN LEVADURA 2[more]
BLAST of Lsi04G010860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109653|ref|XP_008454808.1|1.4e-6784.97PREDICTED: RING-H2 finger protein ATL66 [Cucumis melo][more]
gi|700195498|gb|KGN50675.1|5.4e-6482.35hypothetical protein Csa_5G210015 [Cucumis sativus][more]
gi|778708415|ref|XP_004148199.2|1.6e-6382.24PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
gi|698500514|ref|XP_009796011.1|2.2e-3654.79PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana sylvestris][more]
gi|697113112|ref|XP_009610438.1|4.8e-3657.75PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044267 cellular protein metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G010860.1Lsi04G010860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 96..139
score: 1.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 97..138
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 97..139
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 95..140
score: 3.0
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 4..141
score: 2.1
NoneNo IPR availablePANTHERPTHR14155:SF100RING-H2 FINGER PROTEIN ATL66coord: 4..141
score: 2.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 73..145
score: 7.83

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G010860Melon (DHL92) v3.6.1lsimedB299
Lsi04G010860Silver-seed gourdcarlsiB081
Lsi04G010860Silver-seed gourdcarlsiB605
Lsi04G010860Cucumber (Chinese Long) v3cuclsiB394
Lsi04G010860Watermelon (97103) v2lsiwmbB298
Lsi04G010860Wax gourdlsiwgoB381
Lsi04G010860Cucumber (Gy14) v1cgylsiB597
Lsi04G010860Cucurbita maxima (Rimu)cmalsiB671
Lsi04G010860Cucurbita maxima (Rimu)cmalsiB672
Lsi04G010860Cucurbita moschata (Rifu)cmolsiB662
Lsi04G010860Cucurbita moschata (Rifu)cmolsiB663
Lsi04G010860Cucurbita pepo (Zucchini)cpelsiB354
Lsi04G010860Cucurbita pepo (Zucchini)cpelsiB355
Lsi04G010860Wild cucumber (PI 183967)cpilsiB373
Lsi04G010860Cucumber (Chinese Long) v2culsiB369
Lsi04G010860Melon (DHL92) v3.5.1lsimeB285
Lsi04G010860Watermelon (Charleston Gray)lsiwcgB297
Lsi04G010860Watermelon (97103) v1lsiwmB306
Lsi04G010860Cucumber (Gy14) v2cgyblsiB338