Lsi04G010710 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G010710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	40S ribosomal protein S4-1
Location	chr04 : 12832087 .. 12833866 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGTGGATCCGTCTTCGTTTCCAGAAATATGCATAGGATGATAGTTTAATCCATAAGTTTTCCTATGAAGTTAATGTGTTCTATGGGTTTGACAGGCCAGAGGTTTGAAGAAACACTTGAAGAGGCTGAATGCTCCGAAGCATTGGATGCTGGACAAACTTGGTGGTGCATTTGTGAGTGAATTTTTTCTAGTTTCCGTTTCAGTTTAGTTATTTCTGTTCTTTGTTCTGCCCTTTTGATGAATCCCTTTGTAGGCCCCCAAACCTTCATCAGGACCTCATAAATCCAGGGAATGTCTTCCATTAATCCTCATATTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTTATTGCTATTTTGATGCAACGCCATGTTTTAGTTGATGGCAAGGTCAGGACTGATAAGACCTATCCGGCTGGCTTCATGGGTATGCTCATCTCATCTCAAACTTTGTATTTCTACTCAATATTAGTTTTGTAATACATATTGAATTGGGTCTTGATTCTTCTGTGATCTAAATTAAGAGTTTTAAGGGTATGGAGTTTTAACTTAAGTTGAATGTTGGCTGCTGCTACTCCTCATTTTCCTCTCCCTAGTCTTCTTGATGGAAGTCAAAACAGTTTTCAACCAATCCTTCTACCATAAAAACTACTGTCTCTCATATAAAAGGAGAATGCAACTTTAACTTTATCACCAAACTTACCATTTGCAACAACAAGACACTAACACTCATCGGATGTTCATATTGCATGGAAGTTGTTTGCTTGGAACTGCTCTGTCTCCTAGCTATTGTATAGTATGCGTTCTGTTTAATATTTTGATAGGCTTGACACTTCTTTTTGTTCTAGATGTTGTGTCCATTCCCAAGACAAACGAGAATTTCCGCCTTCTTTACGACACGAAAGGTCGTTTCCGTCTTCACTCAATCAGGGATGAAGAGGCTAAGGTTTGCTATTTCACTAATTATTTGTTACAACAATCCTGTTTATAGAATCAGAATTTTTCTATATGATTTCTGCAAATATCTGTTAGGCCAACGATTATCCATCAAGACAAGTTAGTTACACGGGAATGATGTATGTTTTAGGAATGTTGGCACTGTAGGGTGCGGACGGGTTAGAGAAAGGGGAAGTTGTTAGTATCAGTAGAAGGGAGTAGTAGTATAAATGTATGATTGGGGAGGGTCTCTGATCTTTTTCATTTTATGCTTTTGGTATCAGAGAACTTCTCTGAATACATAGTGAGGACGATACTATCGTTTGAGATTCATGAAGTAAGTCAAATATATACGCAATGCGATGATCAATGATTACTCTGATATGGTCTTTGCAGTTCAAGCTCTGTAAGGTTCGCTCAGTGCAGTTTGGGCAGAAGGGAATCCCTTATCTGAACACTTACGATGGACGTACAATCCGTTACCCCGACCCCCTCATCAAAGCAAATGACACCATCAAGTTGGACCTTGACTCAAACAAAATCGTTGATTTCATTAAGTTCGATGTAGGAAATGTCGTGATGGTTACTGGTGGAAGAAACAGAGGCAGAGTGGGAGTAATTAAGAATAGAGAGAAGCACAAGGGAAGCTTTGAGACCATTCACATTCAGGATGCAACCGGCCATGAATTTGCCACTCGGCTCGGCAATGTGTTTACAATCGGGAAGGGGACAAAGCCGTGGGTGTCCCTCCCCAAGGGCAAGGGCATCAAACTATCCATCATTGAAGAAGCGAGGAAGAGGCTTGCAAGCCAAGCAGCAGTTACTGCTTAA

mRNA sequence

ATGGCCAGAGGTTTGAAGAAACACTTGAAGAGGCTGAATGCTCCGAAGCATTGGATGCTGGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCATCAGGACCTCATAAATCCAGGGAATGTCTTCCATTAATCCTCATATTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTTATTGCTATTTTGATGCAACGCCATGTTTTAGTTGATGGCAAGGTCAGGACTGATAAGACCTATCCGGCTGGCTTCATGGATGTTGTGTCCATTCCCAAGACAAACGAGAATTTCCGCCTTCTTTACGACACGAAAGGTCGTTTCCGTCTTCACTCAATCAGGGATGAAGAGGCTAAGTTCAAGCTCTGTAAGGTTCGCTCAGTGCAGTTTGGGCAGAAGGGAATCCCTTATCTGAACACTTACGATGGACGTACAATCCGTTACCCCGACCCCCTCATCAAAGCAAATGACACCATCAAGTTGGACCTTGACTCAAACAAAATCGTTGATTTCATTAAGTTCGATGTAGGAAATGTCGTGATGGTTACTGGTGGAAGAAACAGAGGCAGAGTGGGAGTAATTAAGAATAGAGAGAAGCACAAGGGAAGCTTTGAGACCATTCACATTCAGGATGCAACCGGCCATGAATTTGCCACTCGGCTCGGCAATGTGTTTACAATCGGGAAGGGGACAAAGCCGTGGGTGTCCCTCCCCAAGGGCAAGGGCATCAAACTATCCATCATTGAAGAAGCGAGGAAGAGGCTTGCAAGCCAAGCAGCAGTTACTGCTTAA

Coding sequence (CDS)

ATGGCCAGAGGTTTGAAGAAACACTTGAAGAGGCTGAATGCTCCGAAGCATTGGATGCTGGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCATCAGGACCTCATAAATCCAGGGAATGTCTTCCATTAATCCTCATATTGCGAAACCGATTGAAATATGCTCTCACATACCGTGAGGTTATTGCTATTTTGATGCAACGCCATGTTTTAGTTGATGGCAAGGTCAGGACTGATAAGACCTATCCGGCTGGCTTCATGGATGTTGTGTCCATTCCCAAGACAAACGAGAATTTCCGCCTTCTTTACGACACGAAAGGTCGTTTCCGTCTTCACTCAATCAGGGATGAAGAGGCTAAGTTCAAGCTCTGTAAGGTTCGCTCAGTGCAGTTTGGGCAGAAGGGAATCCCTTATCTGAACACTTACGATGGACGTACAATCCGTTACCCCGACCCCCTCATCAAAGCAAATGACACCATCAAGTTGGACCTTGACTCAAACAAAATCGTTGATTTCATTAAGTTCGATGTAGGAAATGTCGTGATGGTTACTGGTGGAAGAAACAGAGGCAGAGTGGGAGTAATTAAGAATAGAGAGAAGCACAAGGGAAGCTTTGAGACCATTCACATTCAGGATGCAACCGGCCATGAATTTGCCACTCGGCTCGGCAATGTGTTTACAATCGGGAAGGGGACAAAGCCGTGGGTGTCCCTCCCCAAGGGCAAGGGCATCAAACTATCCATCATTGAAGAAGCGAGGAAGAGGCTTGCAAGCCAAGCAGCAGTTACTGCTTAA

Protein sequence

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLASQAAVTA

Homology

[Close]

BLAST of Lsi04G010710 vs. Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 510.4 bits (1313), Expect = 1.2e-143
Identity = 246/261 (94.25%), Postives = 258/261 (98.85%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKIV+FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Lsi04G010710 vs. Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 510.0 bits (1312), Expect = 1.6e-143
Identity = 246/261 (94.25%), Postives = 257/261 (98.47%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKIV+FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Lsi04G010710 vs. Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 2.7e-143
Identity = 245/264 (92.80%), Postives = 260/264 (98.48%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VI+ILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIVDFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIE+ARKRLA+Q+A  A
Sbjct: 241 GKGIKLTIIEDARKRLAAQSATPA 264

[Close]

BLAST of Lsi04G010710 vs. Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 7.8e-143
Identity = 244/261 (93.49%), Postives = 257/261 (98.47%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKIV+FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Lsi04G010710 vs. Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 3.3e-141
Identity = 246/261 (94.25%), Postives = 254/261 (97.32%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH+I  +E K
Sbjct: 61  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIVDFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
            KGIKLSIIEEARKRLA+Q A
Sbjct: 241 RKGIKLSIIEEARKRLAAQNA 261

[Close]

BLAST of Lsi04G010710 vs. TrEMBL
Match: A0A0A0K4K7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 6.8e-146
Identity = 257/264 (97.35%), Postives = 263/264 (99.62%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Lsi04G010710 vs. TrEMBL
Match: A0A0A0KQK7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_5G212590 PE=3 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 1.5e-145
Identity = 258/264 (97.73%), Postives = 262/264 (99.24%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSIRDEEAK
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIEEARKRLASQ+AVTA
Sbjct: 241 GKGIKLTIIEEARKRLASQSAVTA 264

[Close]

BLAST of Lsi04G010710 vs. TrEMBL
Match: A0A0A0K3Y8_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G281390 PE=3 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 2.0e-145
Identity = 257/264 (97.35%), Postives = 261/264 (98.86%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKH GSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQA VTA
Sbjct: 241 GKGIKLSIIEEARKRLASQATVTA 264

[Close]

BLAST of Lsi04G010710 vs. TrEMBL
Match: A0A0R4J581_SOYBN (40S ribosomal protein S4 OS=Glycine max GN=GLYMA_14G056900 PE=3 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 1.3e-144
Identity = 252/264 (95.45%), Postives = 261/264 (98.86%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRD+EAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLI+ANDT+KLDL+ NKIVDFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTVKLDLEENKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATR+GNVFTIGKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKR+A+Q A TA
Sbjct: 241 GKGIKLSIIEEARKRIAAQQATTA 264

[Close]

BLAST of Lsi04G010710 vs. TrEMBL
Match: A0A067K6J4_JATCU (40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_16213 PE=3 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 3.7e-144
Identity = 255/262 (97.33%), Postives = 258/262 (98.47%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRD+EAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAV 263
           GKGIKLSIIEEARKRLA+   V
Sbjct: 241 GKGIKLSIIEEARKRLATAQTV 262

[Close]

BLAST of Lsi04G010710 vs. TAIR10
Match: AT5G58420.1 (AT5G58420.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 510.4 bits (1313), Expect = 6.7e-145
Identity = 246/261 (94.25%), Postives = 258/261 (98.85%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKIV+FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Lsi04G010710 vs. TAIR10
Match: AT5G07090.1 (AT5G07090.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 510.0 bits (1312), Expect = 8.8e-145
Identity = 246/261 (94.25%), Postives = 257/261 (98.47%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKIV+FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Lsi04G010710 vs. TAIR10
Match: AT2G17360.1 (AT2G17360.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 507.7 bits (1306), Expect = 4.4e-144
Identity = 244/261 (93.49%), Postives = 257/261 (98.47%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKIV+FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNV+TIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Lsi04G010710 vs. NCBI nr
Match: gi|449465362|ref|XP_004150397.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus])

HSP 1 Score: 524.6 bits (1350), Expect = 9.8e-146
Identity = 257/264 (97.35%), Postives = 263/264 (99.62%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFT+GKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Lsi04G010710 vs. NCBI nr
Match: gi|659109681|ref|XP_008454823.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis melo])

HSP 1 Score: 524.6 bits (1350), Expect = 9.8e-146
Identity = 259/264 (98.11%), Postives = 262/264 (99.24%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSIRDEEAK
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLTIIEEARKRLASQAAVTA 264

[Close]

BLAST of Lsi04G010710 vs. NCBI nr
Match: gi|659123052|ref|XP_008461463.1| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 523.9 bits (1348), Expect = 1.7e-145
Identity = 257/264 (97.35%), Postives = 263/264 (99.62%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVS+PK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSVPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Lsi04G010710 vs. NCBI nr
Match: gi|659123125|ref|XP_008461503.1| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 523.9 bits (1348), Expect = 1.7e-145
Identity = 256/264 (96.97%), Postives = 263/264 (99.62%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHVLVDGKVRTDKT+PAGFMD++SIPKTNENFRLLYDTKGRFRLHS+RDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNT+DGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Lsi04G010710 vs. NCBI nr
Match: gi|778701356|ref|XP_011655007.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus])

HSP 1 Score: 523.5 bits (1347), Expect = 2.2e-145
Identity = 258/264 (97.73%), Postives = 262/264 (99.24%), Query Frame = 1


Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 120
           VIAILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSIRDEEAK
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNV 180
           FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIEEARKRLASQ+AVTA
Sbjct: 241 GKGIKLTIIEEARKRLASQSAVTA 264

The following BLAST results are available for this feature:

BLAST of Lsi04G010710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS43_ARATH	1.2e-143	94.25	40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2	[more]
RS42_ARATH	1.6e-143	94.25	40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4	[more]
RS4_SOLTU	2.7e-143	92.80	40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1	[more]
RS41_ARATH	7.8e-143	93.49	40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1	[more]
RS4_GOSHI	3.3e-141	94.25	40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1	[more]

BLAST of Lsi04G010710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4K7_CUCSA	6.8e-146	97.35	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G282410 PE=3 SV=1	[more]
A0A0A0KQK7_CUCSA	1.5e-145	97.73	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_5G212590 PE=3 SV=1	[more]
A0A0A0K3Y8_CUCSA	2.0e-145	97.35	40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G281390 PE=3 SV=1	[more]
A0A0R4J581_SOYBN	1.3e-144	95.45	40S ribosomal protein S4 OS=Glycine max GN=GLYMA_14G056900 PE=3 SV=1	[more]
A0A067K6J4_JATCU	3.7e-144	97.33	40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_16213 PE=3 SV=1	[more]

BLAST of Lsi04G010710 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58420.1	6.7e-145	94.25	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.1	8.8e-145	94.25	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.1	4.4e-144	93.49	Ribosomal protein S4 (RPS4A) family protein	[more]

BLAST of Lsi04G010710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465362\|ref\|XP_004150397.1\|	9.8e-146	97.35	PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus]	[more]
gi\|659109681\|ref\|XP_008454823.1\|	9.8e-146	98.11	PREDICTED: 40S ribosomal protein S4-3 [Cucumis melo]	[more]
gi\|659123052\|ref\|XP_008461463.1\|	1.7e-145	97.35	PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo]	[more]
gi\|659123125\|ref\|XP_008461503.1\|	1.7e-145	96.97	PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo]	[more]
gi\|778701356\|ref\|XP_011655007.1\|	2.2e-145	97.73	PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR018199	Ribosomal_S4e_N_CS
IPR013845	Ribosomal_S4e_central_region
IPR013843	Ribosomal_S4e_N
IPR005824	KOW
IPR002942	S4_RNA-bd
IPR000876	Ribosomal_S4e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G010710.1	Lsi04G010710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000876	Ribosomal protein S4e	HAMAP	MF_00485	Ribosomal_S4e	coord: 7..238 score: 36
IPR000876	Ribosomal protein S4e	PIR	PIRSF002116	RPS4a_RPS4e	coord: 1..241 score: 1.3
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 2..264 score: 8.4E
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 47..90 score: 3.
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 42..106 score: 2.
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 42..104 score: 9
IPR005824	KOW	PFAM	PF00467	KOW	coord: 177..210 score: 1.
IPR005824	KOW	SMART	SM00739	kow_9	coord: 174..201 score: 7.
IPR013843	Ribosomal protein S4e, N-terminal	PFAM	PF08071	RS4NT	coord: 3..39 score: 1.3
IPR013845	Ribosomal protein S4e, central region	PRODOM	PD002667		coord: 87..176 score: 4.0
IPR013845	Ribosomal protein S4e, central region	PFAM	PF00900	Ribosomal_S4e	coord: 95..169 score: 1.5
IPR018199	Ribosomal protein S4e, N-terminal, conserved site	PROSITE	PS00528	RIBOSOMAL_S4E	coord: 8..22 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G010710	Melon (DHL92) v3.6.1	lsimedB299
Lsi04G010710	Silver-seed gourd	carlsiB081
Lsi04G010710	Silver-seed gourd	carlsiB605
Lsi04G010710	Cucumber (Chinese Long) v3	cuclsiB394
Lsi04G010710	Watermelon (97103) v2	lsiwmbB298
Lsi04G010710	Wax gourd	lsiwgoB381
Lsi04G010710	Cucurbita maxima (Rimu)	cmalsiB671
Lsi04G010710	Cucurbita maxima (Rimu)	cmalsiB672
Lsi04G010710	Cucurbita moschata (Rifu)	cmolsiB662
Lsi04G010710	Cucurbita moschata (Rifu)	cmolsiB663
Lsi04G010710	Cucurbita pepo (Zucchini)	cpelsiB354
Lsi04G010710	Cucurbita pepo (Zucchini)	cpelsiB355
Lsi04G010710	Wild cucumber (PI 183967)	cpilsiB373
Lsi04G010710	Cucumber (Chinese Long) v2	culsiB369
Lsi04G010710	Melon (DHL92) v3.5.1	lsimeB285
Lsi04G010710	Watermelon (Charleston Gray)	lsiwcgB297
Lsi04G010710	Watermelon (97103) v1	lsiwmB306
Lsi04G010710	Cucumber (Gy14) v2	cgyblsiB338