Lsi04G010610 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G010610
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionLeucine-rich repeat and IQ domain-containing protein 3, putative isoform 1
Locationchr04 : 12554371 .. 12556005 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGAAGATACTCTAGGTATTGTTTAAGAGAGTTGAAAGTTCAGGAATGATAGCCTTTTTGCATTCTACTTTTTCACAAAGAAAAATGGGACTTCATGCATCTTACAATGTTCTTGGTGTTTGAAGAGAATTTACATAGCCCTCATACTAGATCTGTGGTATAAATGCAGGCTATGATGTATGCACAACCATTGGTCTTATGCCAAGCACGAACATTAGCATCATCGGTAAGTGTTCTCGTACTTCTCTACAGTCTGTTTTTCTTTTTAATATAATTTTTAATTTTTTTTAATATAATGTATTTTGTTCTTTTGTTCTTTTTTATAAATATTCTCATTTTAATTTGGACCATGTAATAGCATGTAACATAGATAGTTTAGTTACATTCTTCATTTTTATTGTCTGTTATTTATATTGAATATGCTCGTTGTACATGTACCATGTATGTGGATAATTTCAATTCCATGACCAGAGGTCCAAGTTGTTGCCACGGTTCATACTCCATGACGAGTATATTAATGGTGTCTTATGTTGGCAGATATAAAAAATCTTGATAGAGGTGTCACCGTTAAGATGTCTAACATTGGCACTAAGGTCAAATGCTCACTTTCCGTGTCTGTAATTTGTACGACAGATGGCATTCAGGTGTGTTTTGTACCATAATATTTGTGAATGTAATAAAAATTAGATTAAAATTTGTTGATTTTATCTCTGTTTTCCAGGTGCCACAAATTTTGGAACAGATGGGGCCTTGTGAGTATGTGAGTGCCTTGACTTTATAGACATGACAGCTCTTCTTAATTGCTTTTTGCCCTCTGAAATAATTGCTCTTTAGGTTCTATCATTAAATATATTTTCTTGTGCGCATCACCAAGACAATTGTGTATTTTTGGATAAGGCATTTGACTACCACTTTTTTAACCCTGGTATTGATCAACATAAACATTATGTGAATTAGATTGAAATTTACAATATCTTGATCTATTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTTTATTTTGAGGTAATATCTTAGTCTATCCACCTTCATTTTTTAATCATCCGGTCTCTTTTTGTATGATTGTCAAGACTATTACTGTCTAATTTGGACTGTCAAATTTTAATATTTGTTATATGATACGAAAACTTGAAGAATTTAAGAAGATAAACACAAACAAGAGAGAATAATAAATACCCCCAAGAACCAAAAAGAGCCAGAAAAGTACTATTCAATTGACGTGTTAGGAACCAAAAGAAAAGCAGAAAAGTCAAGTAGTTCATCTAGATATAAAGAAATACATCTTGGATACGAGTACACAGCGTTTTTTGTACTGAAAATTGGACTCATCAGATTACTTTACAATTGAAGTTGTTTCTTATAAGCCTCTATGGAGGTGCGCATCCCTCTTATAAGCCTCTCTACAGGTTTGGCATGAGTCTGCACATGGGAACTGGTTATATCAGCTTTCTCCATGTCCACCATTTCTGCCTTCCACAACTGTTTCACCTTGGATGCCTTTGTCATGTGGTCAATTTTTTTCTGATATATTGATATCCTTTTTGTAGATTTCAAATACTCAAGAGTCATAAGACTCAGAACTGTTCCTATCCAATTTCATCTTGAAAACCTA

mRNA sequence

ATGTTGGAAGATACTCTAGGCTATGATGTATGCACAACCATTGGTCTTATGCCAAGCACGAACATTAGCATCATCGATATAAAAAATCTTGATAGAGGTGTCACCGTTAAGATGTCTAACATTGGCACTAAGGTCAAATGCTCACTTTCCGTGTCTGTAATTTGTACGACAGATGGCATTCAGGTGCCACAAATTTTGGAACAGATGGGGCCTTGTGAGTATGTGAGTGCCTTGACTTTATAGACATGACAGCTCTTCTTAATTGCTTTTTGCCCTCTGAAATAATTGCTCTTTAGGTTCTATCATTAAATATATTTTCTTGTGCGCATCACCAAGACAATTGTGTATTTTTGGATAAGGCATTTGACTACCACTTTTTTAACCCTGGTATTGATCAACATAAACATTATGTGAATTAGATTGAAATTTACAATATCTTGATCTATTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTTTATTTTGAGGTAATATCTTAGTCTATCCACCTTCATTTTTTAATCATCCGGTCTCTTTTTGTATGATTGTCAAGACTATTACTGTCTAATTTGGACTGTCAAATTTTAATATTTGTTATATGATACGAAAACTTGAAGAATTTAAGAAGATAAACACAAACAAGAGAGAATAATAAATACCCCCAAGAACCAAAAAGAGCCAGAAAAGTACTATTCAATTGACGTGTTAGGAACCAAAAGAAAAGCAGAAAAGTCAAGTAGTTCATCTAGATATAAAGAAATACATCTTGGATACGAGTACACAGCGTTTTTTGTACTGAAAATTGGACTCATCAGATTACTTTACAATTGAAGTTGTTTCTTATAAGCCTCTATGGAGGTGCGCATCCCTCTTATAAGCCTCTCTACAGGTTTGGCATGAGTCTGCACATGGGAACTGGTTATATCAGCTTTCTCCATGTCCACCATTTCTGCCTTCCACAACTGTTTCACCTTGGATGCCTTTGTCATGTGGTCAATTTTTTTCTGATATATTGATATCCTTTTTGTAGATTTCAAATACTCAAGAGTCATAAGACTCAGAACTGTTCCTATCCAATTTCATCTTGAAAACCTA

Coding sequence (CDS)

ATGTTGGAAGATACTCTAGGCTATGATGTATGCACAACCATTGGTCTTATGCCAAGCACGAACATTAGCATCATCGATATAAAAAATCTTGATAGAGGTGTCACCGTTAAGATGTCTAACATTGGCACTAAGGTCAAATGCTCACTTTCCGTGTCTGTAATTTGTACGACAGATGGCATTCAGGTGCCACAAATTTTGGAACAGATGGGGCCTTGTGAGTATGTGAGTGCCTTGACTTTATAG

Protein sequence

MLEDTLGYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQILEQMGPCEYVSALTL
Homology
[Close]
BLAST of Lsi04G010610 vs. TrEMBL
Match: A0A0A0KQL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217160 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.0e-25
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 1 

Query: 7   GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 66
           GYDVCTTIGL+ +TNISIIDIKN DRGV VKMSNI TKVKCSLSVSVICTTDGIQ PQIL
Sbjct: 116 GYDVCTTIGLVQNTNISIIDIKNPDRGVAVKMSNIDTKVKCSLSVSVICTTDGIQGPQIL 175

Query: 67  EQMGPCEYVSAL 79
           E++GPC+Y ++L
Sbjct: 176 EKIGPCDYATSL 187

[Close]
BLAST of Lsi04G010610 vs. TrEMBL
Match: M5X4X3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025595mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.2e-14
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 7   GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 66
           GYDVCTTIG   S +I+IID KN + GV VKMSN G K+ CSLSVSVIC  + +Q P  L
Sbjct: 36  GYDVCTTIGRASSIDINIIDKKNPNSGVIVKMSNSGLKLNCSLSVSVICDPNRVQGPHSL 95

Query: 67  EQMGPCEYVSALT 80
           E+ G C+Y + LT
Sbjct: 96  EKTGKCDYATVLT 108

[Close]
BLAST of Lsi04G010610 vs. TrEMBL
Match: A0A0S3S0X3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G412300 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.3e-14
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 1 

Query: 7   GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 66
           GY VCT IG  P  +  IID KN   GV VKMSN G K  CSL+VSVIC ++G+Q PQ L
Sbjct: 122 GYHVCTAIGRGPKIDFDIIDKKNPHTGVIVKMSNSGPKFNCSLAVSVICNSNGVQGPQAL 181

Query: 67  EQMGPCEYVSAL 79
           E++G C+YV+ L
Sbjct: 182 ERLGACDYVTEL 193

[Close]
BLAST of Lsi04G010610 vs. TrEMBL
Match: A0A0L9UA46_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g300500 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.3e-14
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 1 

Query: 7   GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 66
           GY VCT IG  P  +  IID KN   GV VKMSN G K  CSL+VSVIC ++G+Q PQ L
Sbjct: 122 GYHVCTAIGRGPKIDFDIIDKKNPHTGVIVKMSNSGPKFNCSLAVSVICNSNGVQGPQAL 181

Query: 67  EQMGPCEYVSAL 79
           E++G C+YV+ L
Sbjct: 182 ERLGACDYVTEL 193

[Close]
BLAST of Lsi04G010610 vs. TrEMBL
Match: I1MYZ4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G024100 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-13
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1 

Query: 7   GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 66
           GY VCT IG  P  ++ IID KN   GV VKMSN G K  CSL+VSV+C  +G+Q PQ L
Sbjct: 117 GYHVCTAIGRGPKIDVDIIDKKNPHTGVIVKMSNSGPKYNCSLAVSVLCNLNGVQGPQAL 176

Query: 67  EQMGPCEYVSAL 79
           E++G C+YV+ L
Sbjct: 177 ERLGACDYVTEL 188

[Close]
BLAST of Lsi04G010610 vs. TAIR10
Match: AT2G40316.1 (AT2G40316.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-11
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1 

Query: 3   EDTLGYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQV 62
           E+  GYDVCT++G   ST + IID ++  +GV V+MS       CSLSVSVIC    +  
Sbjct: 107 ENVRGYDVCTSLGHASSTKVDIIDKEDPGKGVIVQMSTGNRNQNCSLSVSVICQKTKVDG 166

Query: 63  PQILEQMGPCEYVSAL 79
           P  L + G C+Y + L
Sbjct: 167 PLTLAKSGTCQYATQL 182

[Close]
BLAST of Lsi04G010610 vs. NCBI nr
Match: gi|659109713|ref|XP_008454838.1| (PREDICTED: uncharacterized protein LOC103495149 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 7.3e-28
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 1 

Query: 7   GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 66
           GYDVCTTIGL+PSTNISIIDIKN DRGV VKMSNIGTKVKCSLSVSVICTTDGIQVPQIL
Sbjct: 116 GYDVCTTIGLVPSTNISIIDIKNPDRGVAVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 175

Query: 67  EQMGPCEYVSAL 79
           E++GPC+Y ++L
Sbjct: 176 EKIGPCDYATSL 187

[Close]
BLAST of Lsi04G010610 vs. NCBI nr
Match: gi|778701388|ref|XP_011655014.1| (PREDICTED: uncharacterized protein LOC101220308 isoform X1 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 5.8e-25
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 1 

Query: 7   GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 66
           GYDVCTTIGL+ +TNISIIDIKN DRGV VKMSNI TKVKCSLSVSVICTTDGIQ PQIL
Sbjct: 116 GYDVCTTIGLVQNTNISIIDIKNPDRGVAVKMSNIDTKVKCSLSVSVICTTDGIQGPQIL 175

Query: 67  EQMGPCEYVSAL 79
           E++GPC+Y ++L
Sbjct: 176 EKIGPCDYATSL 187

[Close]
BLAST of Lsi04G010610 vs. NCBI nr
Match: gi|778701395|ref|XP_011655016.1| (PREDICTED: uncharacterized protein LOC101220308 isoform X2 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 5.8e-25
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 1 

Query: 7   GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 66
           GYDVCTTIGL+ +TNISIIDIKN DRGV VKMSNI TKVKCSLSVSVICTTDGIQ PQIL
Sbjct: 100 GYDVCTTIGLVQNTNISIIDIKNPDRGVAVKMSNIDTKVKCSLSVSVICTTDGIQGPQIL 159

Query: 67  EQMGPCEYVSAL 79
           E++GPC+Y ++L
Sbjct: 160 EKIGPCDYATSL 171

[Close]
BLAST of Lsi04G010610 vs. NCBI nr
Match: gi|694386897|ref|XP_009369219.1| (PREDICTED: uncharacterized protein LOC103958653 isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-14
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 7   GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 66
           GYDVCTTIG   S N++IID KN + GV VKMS+ G K  CSLSVSVIC  + +Q P +L
Sbjct: 95  GYDVCTTIGRASSMNMNIIDRKNANTGVIVKMSSSGLKFNCSLSVSVICDPNRVQGPHLL 154

Query: 67  EQMGPCEYVSALT 80
           E+ G C+Y + LT
Sbjct: 155 EKTGKCDYATVLT 167

[Close]
BLAST of Lsi04G010610 vs. NCBI nr
Match: gi|694386895|ref|XP_009369218.1| (PREDICTED: uncharacterized protein LOC103958653 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-14
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 7   GYDVCTTIGLMPSTNISIIDIKNLDRGVTVKMSNIGTKVKCSLSVSVICTTDGIQVPQIL 66
           GYDVCTTIG   S N++IID KN + GV VKMS+ G K  CSLSVSVIC  + +Q P +L
Sbjct: 113 GYDVCTTIGRASSMNMNIIDRKNANTGVIVKMSSSGLKFNCSLSVSVICDPNRVQGPHLL 172

Query: 67  EQMGPCEYVSALT 80
           E+ G C+Y + LT
Sbjct: 173 EKTGKCDYATVLT 185

The following BLAST results are available for this feature:
BLAST of Lsi04G010610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G010610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQL1_CUCSA4.0e-2581.94Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217160 PE=4 SV=1[more]
M5X4X3_PRUPE3.2e-1458.90Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025595mg PE=4 S... [more]
A0A0S3S0X3_PHAAN9.3e-1456.94Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G412300 PE=... [more]
A0A0L9UA46_PHAAN9.3e-1456.94Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g300500 PE=4 SV=1[more]
I1MYZ4_SOYBN1.2e-1355.56Uncharacterized protein OS=Glycine max GN=GLYMA_18G024100 PE=4 SV=1[more]
BLAST of Lsi04G010610 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40316.13.0e-1143.42 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Lsi04G010610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109713|ref|XP_008454838.1|7.3e-2887.50PREDICTED: uncharacterized protein LOC103495149 [Cucumis melo][more]
gi|778701388|ref|XP_011655014.1|5.8e-2581.94PREDICTED: uncharacterized protein LOC101220308 isoform X1 [Cucumis sativus][more]
gi|778701395|ref|XP_011655016.1|5.8e-2581.94PREDICTED: uncharacterized protein LOC101220308 isoform X2 [Cucumis sativus][more]
gi|694386897|ref|XP_009369219.1|3.5e-1457.53PREDICTED: uncharacterized protein LOC103958653 isoform X2 [Pyrus x bretschneide... [more]
gi|694386895|ref|XP_009369218.1|3.5e-1457.53PREDICTED: uncharacterized protein LOC103958653 isoform X1 [Pyrus x bretschneide... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G010610.1Lsi04G010610.1mRNA