Lsi04G010220 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi04G010220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPentatricopeptide repeat-containing protein, putative
Locationchr04 : 11604730 .. 11605026 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCATGAATGTGCATCAAAATGGTCTTTGGGTGTTGCAAAAACCATTCCTGGGCTTATTGTGAAGGATGTAATTAATCCAGATTCCCATTTGTGGGTTTCGTTGGTGAATGTATATGCAAAGTGCAGGTACTCTTCATATGCTCGATTAGTGCTTGCTAAAATGCCTGATCATGATGTTGTTTCTTGGACGGCATTAATTCAAGGTCTTGTAGCAGAAGGATTTGTTAACGATAGTATTTATTTATTTCAGGAGATGCAAATGAAGGAATCATGCCCAATGAGTTCACTCTAG

mRNA sequence

ATGTTGCATGAATGTGCATCAAAATGGTCTTTGGGTGTTGCAAAAACCATTCCTGGGCTTATTGTGAAGGATGTAATTAATCCAGATTCCCATTTGTGGGTTTCGTTGGTGAATGTATATGCAAAGTGCAGGTACTCTTCATATGCTCGATTAGTGCTTGCTAAAATGCCTGATCATGATGTTGTTTCTTGGACGGCATTAATTCAAGGTCTTGTAGCAGAAGGATTTGTTAACGATAGTATTTATTTATTTCAGGAGATGCAAATGAAGGAATCATGCCCAATGAGTTCACTCTAG

Coding sequence (CDS)

ATGTTGCATGAATGTGCATCAAAATGGTCTTTGGGTGTTGCAAAAACCATTCCTGGGCTTATTGTGAAGGATGTAATTAATCCAGATTCCCATTTGTGGGTTTCGTTGGTGAATGTATATGCAAAGTGCAGGTACTCTTCATATGCTCGATTAGTGCTTGCTAAAATGCCTGATCATGATGTTGTTTCTTGGACGGCATTAATTCAAGGTCTTGTAGCAGAAGGATTTGTTAACGATAGTATTTATTTATTTCAGGAGATGCAAATGAAGGAATCATGCCCAATGAGTTCACTCTAG

Protein sequence

MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCPMSSL
BLAST of Lsi04G010220 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.3e-09
Identity = 30/87 (34.48%), Postives = 45/87 (51.72%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           +L  C  +  L V K I GL+VK   + D      L N+YAKCR  + AR V  +MP+ D
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEM 88
           +VSW  ++ G    G    ++ + + M
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVKSM 227

BLAST of Lsi04G010220 vs. Swiss-Prot
Match: PPR88_ARATH (Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-08
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 1

Query: 29  DSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQ 88
           DS  W ++++ YAK R    A L+  KMP+ + VSW+A+I G    G V+ ++ LF++M 
Sbjct: 135 DSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMP 194

Query: 89  MKESCPMSSL 99
           +K+S P+ +L
Sbjct: 195 VKDSSPLCAL 204

BLAST of Lsi04G010220 vs. Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-08
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           +L  CA+       + I GL +K  +  D  +  +LVNVY +  Y   AR VL +MP  D
Sbjct: 146 VLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRD 205

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQ 89
            VSW +L+   + +G V+++  LF EM+
Sbjct: 206 AVSWNSLLSAYLEKGLVDEARALFDEME 233

BLAST of Lsi04G010220 vs. Swiss-Prot
Match: PPR60_ARATH (Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-08
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           +L  CA   +  V +T+  L+ ++ I  D+ L  +LV++YAK      A  +  +M D D
Sbjct: 334 LLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKD 393

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESC 94
           V SWTA+I G  A G   +++ LF +M+ +E+C
Sbjct: 394 VKSWTAMISGYGAHGLAREAVTLFNKME-EENC 425

BLAST of Lsi04G010220 vs. Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-08
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           +L  C+   +LG    I G I+ + I  D  +  +LV++YAKC     A  V + M   D
Sbjct: 299 VLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKD 358

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP 95
           ++SWTA+IQG    G  + +I  F++M      P
Sbjct: 359 ILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKP 392

BLAST of Lsi04G010220 vs. TrEMBL
Match: A0A0A0K4Y9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G388380 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.9e-38
Identity = 82/94 (87.23%), Postives = 84/94 (89.36%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           ML ECASK SLGVAK I GLIVKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD D
Sbjct: 223 MLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRD 282

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP 95
           VVSWTALIQGLVAEGF NDSIYLFQEMQ +   P
Sbjct: 283 VVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 316

BLAST of Lsi04G010220 vs. TrEMBL
Match: M5VT93_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020478mg PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.3e-19
Identity = 50/88 (56.82%), Postives = 60/88 (68.18%), Query Frame = 1

Query: 1  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
          ML  C  + SL   K I G ++K+ I+PD HLWVSLVNVYAKC    YAR VL +MP+ D
Sbjct: 1  MLRTCVLQGSLNEGKAIHGQVIKNGIDPDLHLWVSLVNVYAKCGDCGYARKVLDEMPEQD 60

Query: 61 VVSWTALIQGLVAEGFVNDSIYLFQEMQ 89
          VVSWT LIQG V  GF  D++ LF EM+
Sbjct: 61 VVSWTTLIQGFVVNGFGVDAVKLFCEMK 88

BLAST of Lsi04G010220 vs. TrEMBL
Match: B9RKB2_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1048080 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.3e-19
Identity = 48/94 (51.06%), Postives = 63/94 (67.02%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           ML ECASK +L     I G ++K  + PDSHLWVSL+N+YAKC   ++AR VL  M + D
Sbjct: 99  MLRECASKGNLNEGTAIHGNVIKSGLEPDSHLWVSLINLYAKCGSLAFARKVLVGMRERD 158

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP 95
           VVSWTALI G V+EG  +D +  + EM+ +  CP
Sbjct: 159 VVSWTALIAGYVSEGCGSDGVKAYCEMRKENICP 192

BLAST of Lsi04G010220 vs. TrEMBL
Match: F6HGR7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g02500 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-18
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 1

Query: 5   CASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSW 64
           CASK  L   K I G ++K  INPDSHLW SLVNVYAKC  ++YA  V  ++P+ DVVSW
Sbjct: 43  CASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSW 102

Query: 65  TALIQGLVAEGFVNDSIYLFQEMQ 89
           TALI G VAEG+ + ++ LF EM+
Sbjct: 103 TALITGFVAEGYGSGAVNLFCEMR 126

BLAST of Lsi04G010220 vs. TrEMBL
Match: U5FHM8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06910g PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.7e-18
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 1

Query: 1  MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
          ML ECASK  +   K I G ++   +  DSHLWVSL+N YAKCR   +AR VLA+MP  D
Sbjct: 1  MLRECASKGDVKEGKAIHGNLITSGVELDSHLWVSLINFYAKCRSRFFARKVLAEMPQRD 60

Query: 61 VVSWTALIQGLVAEGFVNDSIYLFQEMQ 89
          VVSWTALI G V EG  ++S+ L+ EM+
Sbjct: 61 VVSWTALISGFVNEGCGSESVSLYCEMR 88

BLAST of Lsi04G010220 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.2e-10
Identity = 30/87 (34.48%), Postives = 45/87 (51.72%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           +L  C  +  L V K I GL+VK   + D      L N+YAKCR  + AR V  +MP+ D
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEM 88
           +VSW  ++ G    G    ++ + + M
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVKSM 227

BLAST of Lsi04G010220 vs. TAIR10
Match: AT1G62260.1 (AT1G62260.1 mitochondrial editing factor 9)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-09
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 1

Query: 29  DSHLWVSLVNVYAKCRYSSYARLVLAKMPDHDVVSWTALIQGLVAEGFVNDSIYLFQEMQ 88
           DS  W ++++ YAK R    A L+  KMP+ + VSW+A+I G    G V+ ++ LF++M 
Sbjct: 135 DSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMP 194

Query: 89  MKESCPMSSL 99
           +K+S P+ +L
Sbjct: 195 VKDSSPLCAL 204

BLAST of Lsi04G010220 vs. TAIR10
Match: AT4G18840.1 (AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-09
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           +L  CA+       + I GL +K  +  D  +  +LVNVY +  Y   AR VL +MP  D
Sbjct: 146 VLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRD 205

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQ 89
            VSW +L+   + +G V+++  LF EM+
Sbjct: 206 AVSWNSLLSAYLEKGLVDEARALFDEME 233

BLAST of Lsi04G010220 vs. TAIR10
Match: AT1G26900.1 (AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-09
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           +L  CA   +  V +T+  L+ ++ I  D+ L  +LV++YAK      A  +  +M D D
Sbjct: 334 LLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKD 393

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESC 94
           V SWTA+I G  A G   +++ LF +M+ +E+C
Sbjct: 394 VKSWTAMISGYGAHGLAREAVTLFNKME-EENC 425

BLAST of Lsi04G010220 vs. TAIR10
Match: AT1G04840.1 (AT1G04840.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-09
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           +L  C+   +LG    I G I+ + I  D  +  +LV++YAKC     A  V + M   D
Sbjct: 299 VLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKD 358

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP 95
           ++SWTA+IQG    G  + +I  F++M      P
Sbjct: 359 ILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKP 392

BLAST of Lsi04G010220 vs. NCBI nr
Match: gi|449458534|ref|XP_004147002.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.6e-38
Identity = 82/94 (87.23%), Postives = 84/94 (89.36%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           ML ECASK SLGVAK I GLIVKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD D
Sbjct: 118 MLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRD 177

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP 95
           VVSWTALIQGLVAEGF NDSIYLFQEMQ +   P
Sbjct: 178 VVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

BLAST of Lsi04G010220 vs. NCBI nr
Match: gi|700189572|gb|KGN44805.1| (hypothetical protein Csa_7G388380 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.6e-38
Identity = 82/94 (87.23%), Postives = 84/94 (89.36%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           ML ECASK SLGVAK I GLIVKDVINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD D
Sbjct: 223 MLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRD 282

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP 95
           VVSWTALIQGLVAEGF NDSIYLFQEMQ +   P
Sbjct: 283 VVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 316

BLAST of Lsi04G010220 vs. NCBI nr
Match: gi|659100922|ref|XP_008451336.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-37
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           ML ECASK SLGVAK I GLIVK+VINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD D
Sbjct: 129 MLRECASKRSLGVAKAIHGLIVKNVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRD 188

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP 95
           VVSWTALIQGLVAEGF NDSIYLFQEMQ +   P
Sbjct: 189 VVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 222

BLAST of Lsi04G010220 vs. NCBI nr
Match: gi|659100932|ref|XP_008451342.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X3 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-37
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           ML ECASK SLGVAK I GLIVK+VINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD D
Sbjct: 100 MLRECASKRSLGVAKAIHGLIVKNVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRD 159

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP 95
           VVSWTALIQGLVAEGF NDSIYLFQEMQ +   P
Sbjct: 160 VVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 193

BLAST of Lsi04G010220 vs. NCBI nr
Match: gi|659100924|ref|XP_008451337.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-37
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 1

Query: 1   MLHECASKWSLGVAKTIPGLIVKDVINPDSHLWVSLVNVYAKCRYSSYARLVLAKMPDHD 60
           ML ECASK SLGVAK I GLIVK+VINPDSHLWVSLVNVYAKCRYS+YARLVLAKMPD D
Sbjct: 118 MLRECASKRSLGVAKAIHGLIVKNVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRD 177

Query: 61  VVSWTALIQGLVAEGFVNDSIYLFQEMQMKESCP 95
           VVSWTALIQGLVAEGF NDSIYLFQEMQ +   P
Sbjct: 178 VVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PPR32_ARATH9.3e-0934.48Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
PPR88_ARATH2.7e-0838.57Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidop... [more]
PP321_ARATH2.7e-0835.23Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN... [more]
PPR60_ARATH3.5e-0834.41Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidop... [more]
PPR10_ARATH4.6e-0832.98Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN... [more]
Match NameE-valueIdentityDescription
A0A0A0K4Y9_CUCSA3.9e-3887.23Uncharacterized protein OS=Cucumis sativus GN=Csa_7G388380 PE=4 SV=1[more]
M5VT93_PRUPE5.3e-1956.82Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020478mg PE=4 SV=1[more]
B9RKB2_RICCO5.3e-1951.06Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
F6HGR7_VITVI2.0e-1857.14Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g02500 PE=4 SV=... [more]
U5FHM8_POPTR7.7e-1854.55Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06910g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G11290.15.2e-1034.48 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G62260.11.5e-0938.57 mitochondrial editing factor 9[more]
AT4G18840.11.5e-0935.23 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G26900.12.0e-0934.41 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G04840.12.6e-0932.98 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449458534|ref|XP_004147002.1|5.6e-3887.23PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-... [more]
gi|700189572|gb|KGN44805.1|5.6e-3887.23hypothetical protein Csa_7G388380 [Cucumis sativus][more]
gi|659100922|ref|XP_008451336.1|2.1e-3786.17PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-... [more]
gi|659100932|ref|XP_008451342.1|2.1e-3786.17PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-... [more]
gi|659100924|ref|XP_008451337.1|2.1e-3786.17PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G010220.1Lsi04G010220.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 33..59
score: 0.4coord: 62..90
score: 3.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 62..94
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 60..94
score: 9.931coord: 29..59
score: 6
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 27..88
score: 1.1
NoneNo IPR availablePANTHERPTHR24015:SF465SUBFAMILY NOT NAMEDcoord: 27..88
score: 1.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G010220Bhi07G000417Wax gourdlsiwgoB381
The following gene(s) are paralogous to this gene:

None