Lsi04G010090 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G010090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	UPF0176 protein
Location	chr04 : 11341233 .. 11351035 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTTGGGATGACTTTGAATGTTTATCTTTATTGTTTCTATGTGGGTTGAGTTGTTATTAGTGTTAAAGTTGGGGTGTTACTAGATGTTTATGATGTTAAAGTTGTTTTTTGTGACTTATTACTTTCTTAAATGTGTTTTTGACTTTTGTTTTTGTTAATTGTTTTTCAGGACCAACTTTCAATGAAGATCACTTTTCTTAGCAAGTTAACTAGAAGCCAGAGTCTGAACTTTATTTTCTAATTTGTTTAGAGACCAAATTACTTAATTGTTATGTGTTTTGAGGACTAAATTATTATTTTTGTGATGTAACTTTATTTACGTGTTTATGTAAAACACTTGTAAGACTTTTAAGATAATGTTGAATTGCAGCTTTGTTATGTAATTTGTTTACTTTTAGGTACAAAATAGAGTAATCAACAAAGGATTACATTAAAAAAAACAATACAATTATAAAATAGTTTTTTGGAAAAAAATACGCATATGCCAACGCAACAAAGTATTATCAGGCGTCAGCATTTCAAGGATATGTCGACGACAAACTGTAATCGTTAGCATAGAAGAACTACCGACGCCAAGTGTATGTCGTCGATATTGCGAGGATATGCCGACGGTACTTTCGAACCATCGGTATTTAATAACTGTTGACGCCATATTTCTTCGTCGGCATATATACCTTTAGCAAACGTATTTTGCTAGCGTCGGCATCGGTCGGACTTGACGACGACCGTCGGTAGTTTCGACATACGCCGACGCCTTTTTTTACGCGCCGAGGAAGGATATGCCGACGGACTTACGCCGACGAAATTTGCCGACGGAGGTTTAGCATTGGTATAGGTTATGCCGACGCATTTTTCGACCTACGTCGACGATTTGTGGCGCCGACAAAAGGGAAAATTCTTGTAGTGTATACTAGATTCAATTCTATTTTATGAGATTATTATCATATTATCGTATGCTTGTAGATGTATGGTTACTACTTTTGATTGACGCTCAATTCGTGACACTTGGTTGTATGTTGATTCGTAGAAAGCGGTAGGTTAGGTTAGCTTGTGAATCAAATTAGAAGAGTATTGATCTAACCAACCTAGGATTGAACCAAATGAACATTTAACTAGATGCTTGAAAGTTAGATGTTCACCCTAATGTTCCCTAGATCTTAATGCAATTAGAACAACTTGATTTTCATGTTTTTCATCTAATCAATTTGGACTAGTTAGTTGTTTAGGACAATTTAGTTAGTCTTCAACTTGAAATAATAAATAAGTATATATATATATATATATATATATAAAAGTTCACTACTCTATATGTGTAAGAGATAATTAATAAATTATATATATATTGAAGCGGGGTGGGGACAGGGAATATGATTCTTATCCCCGTTTAGCCATCGGGAAGAAAAGCCTTCCCGCTCCCTCCCGCATTCCCCACCAAATTAGGGATTCGCCCCCTGGGACAGAATCCCCGCGGGTTAAATTAACATATCTACTCTAACATCTTCTCTAAAGTATGGTGATGTTTGATGGTGAACACAACTGCAAAGTATCATAAATGACTAGAGCTTCTATCCAACTAATCTCACCATTAGATATCCATATGAGAACAATTAGTTGAAATCATAGTATTAAATTTTCATCGATATGTCGATATTTCCACATTTCCATGGGTTCGATATCGATATGAGAGGTGAATCGATTTTTCCATTATATCGTATAAAATTCCACGAAACACAAAAAATAAGTATTAAAATGCTACTAATATAAATATAATATAAATAATAGACATGTTTACTTATTTGAAAATAATAAAATGTTTATTTACTAATTTAATTTTTTTTAATTTTTGTTTTATAATTTTTCCAGTATATCCATTGAAATCGATATTTTATCGATATTTCCATCGAAATTTCCGTAAAATTAAAACCTCGATATTTCTATCGATATCGATATTTTAAACCATGGTTGAAATAACAAAATAATAATAATAAATAAATAAAGTAGAATCCTAAACAAATATGTGGTGAAAGTGTTGGTATAAGATTGATGAAAAAATGTCATTTTTATAATTGTTGATGAGAAACTGTTATCAAATTTTTGGTTTTCCAAAACTTTTGAAATTTTGCAATTAATTGTAATTAAAAGAAAAAAAATCTTTAAATTGTAGAAAAACTTTTTGTATTTCTATATAATGTTTATAATTAATTACTTTTTTTTTAAAAAAATATATATATAAGGAATTATTTTTAGGGGTCTTTTCAAAAATAGAAAAAAAAAACTAATTACACATATAGAAAAAAAAGTGGAAAATAGAAAAGTACGGGTGTACTCTTTTCTATATGTGTAATTAGTTTTGTTTTTTTTTCTATACACAACAATTTCTCTTATTTTTAATAGATTTTTATTATTATTTATTAATGATATATTTATATTTATAAATTTATAAATGAAAGAAGTGACAAATTTATATTTTAATTAAATTATTAAGTTATATTAAGAAAATGTGGGTGGGTGTTAATTAAGCATTTATTTTCTAATTTAAAAGAAGATAATTTAATAAGAATAAAATTATTAGTAGAATTAATTGCAAGTGGTATATTGGGTAAATTCAAAATTGATAAATGGGCAAAATAGTCTAATTTTTTTTTCTAAGATTGCTCATTTTTAATAGTTTATAGATATAGATTATGGATATAGATTATAGATTATAGATTTGATTTGAGACTCTAGTTTTGATTTTGCAGTTTCTAAAAATAATTTAATATAAATAATAGAAAAATTATCTTAAATGGTAAAACGGTTGAAAATAATTACAAATACAGTAATGATAGACTACATCTGTGTCTATCAGTGATAGAAGATAGTATGTCTATCACTAATAGACAATGACATTTTGCTATATTTATAAATATTTTGATTCATTTTGCTGTATTTAAAAATAGTCCATAATACATATTTTCTTGTAACTCAATTTCAAAGTAATGCATTGTATTCACACAAAATTTAAAATATAATAATAATAATTTGTGAAAATGAACTCAATTTTATATTAATTTCGTATGAGTATAATATGAGAATAGTGTAATACAACGTTTCATGTATATCTACGGATTCTTTCTATTTCAAATGTAAATTTGTCTCGAGAGATTCACCACTTATTTTTAAATCAGGATTTATCTCAACCATTTGTAATTTTGTCTCAAAACCGAATCTTCAAGTTCAATTTGGTGTCGTGAGATCTCTAGATCTTCAACAAGATTTTTAATCTTAAGTTTTCTAAACTTTTTTTTGGAGTTTTTTTCTGAAATTTTCTATATCCTTTTTAATTCTTATTTTTGAGATTGTAACTTTAAAAATGAAGGATGAGACCTCTTGTGGGCACTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTAACTTATTTATTTTTATTTGAGCTTTGGGGCAAATTTTTTAGATTTTTTTATTATTATTTAGTTGATGTTGGACTCATTTCTATATGATTCAATTTGATCAAACCAGACTGACTTGATCAAATGTGACTATATTGAAGACACAACATTGTTTAGGGTTCGCTAGTTTTTGATCTTTCAATTTAATTTGAAACACATATTAATTTTTAATTATTTCAATTTTAATATTACATAATTTATTATCAATCTATGTTAAATTACCAAAAAATTACTATAAAAAAATATCAAATTATTTACAGACATAGAAAAATTTCACTGTCTACCGATAGTAAACTTTTTATATAATTATAAATAGTTTAGCTCATTTTTCTATATTTAAAAATATTCCTAAATGACCTATTATTCTGGAAATTTCTCATTTAACACATCCACCACACTATACTAAATATCATATATTAGTTATAATAAATAAATATATGTCTACTTTACTATATATGTAATTTCCTTCCACAACTCTTTTTTTATTAAATTATTATTTTGGTACCTATACTTTTAAGCTTGTTTATTTTTAGTCTTTAAATTGTTATTTTGGTACCTATACTTTGAAGTTTGTTTAGTTTTATTCTTTCTACTTTCAATTATTCAAATTTAGTCTTTATACTTTTAATAAATCTTAAATTTAATCTCCACTACTAATTAATTTTTGATTTTTTAAAAAATGTTTTTGTTATCCGATAACATTTTTACTAAATTTTAAAAACATATTCACATATTATATTATATTTTATTGATTAAAAATTATTATTTTATTAATTTTGATAAAAGATAACTTTGAGGGACTGAATTTAAGATTTAATGAAAGTATATAAACTAAAATTGAACCAACTCCAAAGTATGATACCAAAATGATATTTTAATTAATTTATTTATATTTTTTATAAAAAAACCTTCACTAATTTTGAAATATTTGGGCTTGGTTCCCGGGCCGAAGTACTATGGGCTTTTCTTTTTCTAAAGTAAAGCCCAACATTAAAATAGAGCGAAGAAAGGACGAAGAAGGCGAACGACTCGTCGTCCACAGCCTCCATGCTCAGATATAGAGCTTCTCCATTGCTAGCCCTGGGAATGGTATCGCCATTGCCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTTCTTCAAACCCTAATCTCATCACATTCAATCCCTCTTTCCCTATTCTGAAACCCTCCCTTTCTCTCCCTTCGCATCTATCCTCTTTCCTTCAGAAGCCCACTCGGAGTATGACTCATTCCAGATGCTTCTCTGGACCTTCTCCTACCGTTCCCATTCCCAGCGCATGCGAAGAGGAGGAGATGGATTCAGTCTCTCTTGTTGTTGTTTCCTTCTATAAGTTTGCTGATTTTCCTGACCATGCGGAATTTCGCTCGCCTTTGAAGAAGCTCTGCGAGGAACTGGTACTTGTTTTGTCTTGACTCTTGTCTTGTTTTGTGTGTTTTGGTTGGTGTTGTATATGGTTTAGTTTTGTTTGGGGATTGGGATTTTCTTGATTATGAGGGAATGATGCTGAAGGGTTTTCGGGTATATTAAGTGATTTCTTGCTGTGAAGTGATAGATTTGGAATTTGGGGTGAATTTTTGGTTCTGTGAACCAATGGAAGTTGTTGAGTAGTTCACCAACTTCTGAAGATAATTACTACTGATTGCTTCATGGAAGAGCAAAAGTTTCCCATTTTTACCATAATGTGCTGTGTATGTAGTTGCCTACCCATTTCTTTGAAACAAAGGCACTTCAGCGAATCGCAAAGTAATCTTGTCTGTCACATAAATTTTCCTCTCCTTCAAACTCGATGCAAAACAACCACCTCTATGATTGGTTGTTATCTTGGTGAGGAACCTACATTATTCTGAAAGAGCTCCAAAAGCTTGTAGTAAAAGAAACACCTCCATCAAATATGTTTGAGATCCTCTAATTCATATTTACACAGCAAAAGGAACCAACACAATGACAGGTCAAGCATCTGGGAGGAAGAACTATGAAGATAGGCAATGATGTTCATCCTCGTTTCCTCCTTAAAGAATCAAGCCAAGAGAAGACCCCCATATTCTTTGGGATCTTAGCCTTCCATAGGTTAGAATAGAAATGATTGGAAAATGGAGATGAGAAAGGAAAGAGAAAATCTCAAGTAGCAGAAGTGAAAAGCTTAATGAAATAAGACTTACACAATTCTTCTTCTTCTTCTTCTTCAAAAAAAAAAAAAAGAAATACGACTTACACAAAAATACTCAAGAAGGATTAAGAGATCGACAGTGATCATGTAAACCCCAGACCTATTTACCTTCAAATCAATGATAGAAGGGAAGTCAGATCTGACAAATCTTCCACCTCTTTGTTGGAAAGGAAAGAGCTTTTTATTTTATTTTTAAAAAAACCAAACTTTCATGAGCATCCAAAAGAGAGAAAAAAAAAGAAAAAGATTAAAAGCCCACAGAAAACAGGTAGTCCTTCTAAAGGAAGGGACTTCAGGAAAGAGCTCCCTTTAGAAATAAAATAGAAGAGAACCCTTCAAAGCAGGAAAAGACTGAGGTTACAAATACTCCCTTGACAAGCAGTGGGTTGCAGACTAGGAATATCAAACGAAAGGGATCACCATCAATCCATTGGTTGTCCCAGACTTCAAAATTGATTTGTTTTCCATCATTAGGAAAGTTGACAATCAACTAGTTCTTATCCGAAAAAGATGAACAAACATTATAAATTGATTTGGTCATCATGCTTTAGCAAAAACATACAGGTATTAGCTGGATATATTTAACATATGCTAGTAGCATTCCTTCAACATATTAAAGGAATGGTGAAAGTTTAATAATTTCATTGCTATGGCAAGCCTAAAAGGAGGTTTCCCTCTCTTTTGGTAATTTTACATGATCTTGAGGAGGAAATGATTCTTCTCATTCCCTAATTGATAAATTCTTCATTACCAAGGATTGGGATGATCTCTTTCCAACACCAGAATCTCAAGAGAATCTAGAACAATTTCGGATCATTTTCCATTATTGTTAAAAGCTTGTGTAATCATATGGGGACCTTCTCCTTTTCAGTTTTGCTATAGTTGGTTGGCACAAAAGGAGTGCTGTGGAAAGATTGAAGCCTCCGTTGCTGATTTTAGAGTACAAGGATGGCTGAATTTGTTATTGATGCTAAACTTAGAAGAATAAAAGATGCATTAAAGTCTTGGTTTGCTGTTTTTGAGAAAGAAAGGAAGAGAAAAGTGGGAAGAAGTCTTCGAAGTACTTGGATAATATCTCTTGAGCTTGGTTACAAGTTGAAATTTGGCTACCTTTAATCTTGGCCGAGACTTAAATGTTGAAGAGATGCTGGATTTTCATAATAACAGTGGAAGAGGGTAAAGAGTAGTTGAAAGGAATGTTTCCAGAAAATGGTCATTGGCAGCTTCAGGAGATCGTAACTCAGCTCTTAGTTGGTGCGCCCTTAAAGGCTCACATCAGTTGTGGGTTTAATGCAGTCAAAGTCATTCTTTCAAAACTCTGGTTTGAAAGGATTCAACGCAGTTTTCAAGATAAGTCACTTCATTGCTTAGACCATTTTGAGATCGCTCGAGTGAAAGCCTCCTCTTGGTGCTCTTTTTCCAATGTTTTTATAGACTATTCAATTCAAGTCATTAGTTTAAAATGGAGTGCTTTTGTTTCTTCTTCTTCTATTAGTTAGCTTGTAATCTCTTGCTAAGTGTTTGCATTATACTTGATTTCATCTCTTGTTGGTTATTTCTGTGTTGTCTTCTATATTGTATTTTGAGAAGCATTAGTCTCATTTCATTATTTCAATGAAGTGGTTTGTTTCCGTTTCAAAAAAAAAAAAGAAAAAAGAAAAGACATATGCTAGTAAGGAGTCAAAGTGATTTGACAACATAGAGAACTCTGTTTATTTCATGTAGTTGAAAGGTGACCTTGAGTTTTATTCCCCCAGTATAAAGAATGAAGTGAATACAAGTTAGCTGCTAATAGAGACTGGATATGGAAACATTTTCTGTTTTCTTTTTCAGTATCTAGACTTCATTTGTTATTATAAATTTAGACCGCTTTTTGCTGCCCTGTTTGGATTACATTACTAAGCTAATCTTGCTCAGCGTGTTTCAGGAGGTATCATTCTCGCACCTGAAGGAATTAATGGGAGCATATGTGGATCACGAGAATCTGTCCGAAGGGTTCTTGGATTCATTGAAAGTGATGAACGGCTAAAAGAATTAAGGCAGGTGGAAACACCTGTTAGTCCTGAAGAAGAAGCCATCCACCACGGACATACTAGCAGTTCCCCTCTTGCAGCAGGGGAAGATGCACCTTTTCGTTGGGATCATGTCAGGGTCAAATTAAAGAAAGAGGTACTCAAATCTTAATTTTTTTTCTTTATTTTCTTAAGGATATGAGAATTGAAACGGAGGTAGATGTAGAATATAAGAGCACGGCTTGGTTTTCTTATTTGTTGATTTATATTCATTTATTGATGCTTTCGTCCCAATGCTATGTTTGTTTGTGCAGATTGTCACTCTTGGAATGCCTGTTATATCACCTGTTGAAAGGGTTGGACAATATGTGAAACCAAGGGATTGGAATGCACTGATAAGTGACCCAGATACTGTGAGTAATCGTACTTGTCTTAATTTTAATTATAATATTTAAGTTGCCAATTGTTCTGTGGGATTCGTGTTTCTGCACATATTCTGATTATTGAATTGTTATTAAACTTAAATCTATTGCCACGGTAGGAGTTGCATTTAGTTGGTTAAATGGACATATATATTGTGATTATCTGGCTGAGTATTCTGAGATTTTAGACATCTTCTCGTTGAAGGGAATAAGGTGACCATGCTAAATAATTAAATGTTAATGTAGGTGGTTATTGATGTGCGAAATCACTACGAAACAAGGATTGGGAAGTTCAAAACAGCAGTTGATCCTTGTACTACAGCATTTCGAGATTTTCCAGCTTGGGTGGAGGATAGTTTCCAACTTCCTAAATCAGATTGCAAGTATTCAAATCAAGGAGTTGAAGAAGAAACAGTTAACCCTGAAGAGAACTCGCCTCCACGAGTTGCCATGTACTGTACTGGAGGAATCCGTTGTGAGAAAGCTTCAAGTTACCTCCTTAGCAAAGGCTTTAAAGAGGTGAACTTGTTGATTTCTATATAACATGATTTACTTTTGGATAAACTTTGGACTTCACACCTATATGATTGCCACACTCCGAAAGCACTCTAAATAACTCCTTGGATAATCGCTGCCTTGAAAAATCACAAGCTTTTCAGAAAAAAAAAAAATGTTCCGAGGTCGATGATCAATGCATGCATTTAATCTGGAAAATGTTTAATCAAACCGTTTTCTATGCCATCCGAACTGCATTCTCATGGATTTTTCTGGCTGAGATACTATTAATCTGATGCATTATCTTACCTGAATCTTTTTAAGGTTTATCATTTGGAAGGTGGAATTCTGAAATATCTGGAGGAAGTTCCAAAGTCAGAGAGCCTATGGGAAGGAGAATGCTTTGTATTTGACAAGCGTGTCTCAGTTGAGCATGGTCTGGAGCAGGGCACATTCAAGCTTTGTTATGGGTGCAAGCAACCAGTGAGTGATGCTGACATGGAATCTCCCGAGTGGGAGTATGGAGTTTCTTGTCCTCACTGCTACTCAACGAAATCTGAAGAAGAGAAGGAGAGGGCAAGAGCTCGGCAAAGGCAATTTGAGACTTGGGGCATCATTGGTGGTCCGGACAAAGGCCGGCGACCAACACAAAGTGATAACAATATTAATCTTCCAAATTAAATTTGATCCTTTGCTGCTTAAGGTTCTTTTTTCATTTTTGTATTAGAGACTTACACAAAGGATAGATCAAAATGTCCATCTCCACCTTAATTATTGTCTTGTGTACAATATTATACCCTTTTTGTTGATTATGAAAAAATTGAGAAATTTTGGAACTTGGTCCTCTCTATTAAATGAATTTCGATACATCCAGATTCGAAGACTGTTTTTCTGGTTCTCTGTTTTCATGACACGTGAGCAACAAAGAAAGCCGTGAAGTGATGAGAACAAACAAAGATTTATTTCACTAAAATCGTTACAAGTATGGCTCCTTTCTGAGCTAAGAGATAGAGAAACATAAAAGAAAT

mRNA sequence

ATGTGGAGCGAAGAAAGGACGAAGAAGGCGAACGACTCGTCGTCCACAGCCTCCATGCTCAGATATAGAGCTTCTCCATTGCTAGCCCTGGGAATGGTATCGCCATTGCCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTTCTTCAAACCCTAATCTCATCACATTCAATCCCTCTTTCCCTATTCTGAAACCCTCCCTTTCTCTCCCTTCGCATCTATCCTCTTTCCTTCAGAAGCCCACTCGGAGTATGACTCATTCCAGATGCTTCTCTGGACCTTCTCCTACCGTTCCCATTCCCAGCGCATGCGAAGAGGAGGAGATGGATTCAGTCTCTCTTGTTGTTGTTTCCTTCTATAAGTTTGCTGATTTTCCTGACCATGCGGAATTTCGCTCGCCTTTGAAGAAGCTCTGCGAGGAACTGCGTGTTTCAGGAGGTATCATTCTCGCACCTGAAGGAATTAATGGGAGCATATGTGGATCACGAGAATCTGTCCGAAGGGTTCTTGGATTCATTGAAAGTGATGAACGGCTAAAAGAATTAAGGCAGGTGGAAACACCTGTTAGTCCTGAAGAAGAAGCCATCCACCACGGACATACTAGCAGTTCCCCTCTTGCAGCAGGGGAAGATGCACCTTTTCGTTGGGATCATGTCAGGGTCAAATTAAAGAAAGAGGATATGAGAATTGAAACGGAGGTAGATGTAGAATATAAGAGCACGGCTTGGTTTTCTTATTTGTTGATTTATATTCATTTATTGATGCTTTCGTCCCAATGCTATATTGTCACTCTTGGAATGCCTGTTATATCACCTGTTGAAAGGGTTGGACAATATGTGAAACCAAGGGATTGGAATGCACTGATAAGTGACCCAGATACTGTGGTTATTGATGTGCGAAATCACTACGAAACAAGGATTGGGAAGTTCAAAACAGCAGTTGATCCTTGTACTACAGCATTTCGAGATTTTCCAGCTTGGGTGGAGGATAGTTTCCAACTTCCTAAATCAGATTGCAAGTATTCAAATCAAGGAGTTGAAGAAGAAACAGTTAACCCTGAAGAGAACTCGCCTCCACGAGTTGCCATGTACTGTACTGGAGGAATCCGTTGTGAGAAAGCTTCAAGTTACCTCCTTAGCAAAGGCTTTAAAGAGGTTTATCATTTGGAAGGTGGAATTCTGAAATATCTGGAGGAAGTTCCAAAGTCAGAGAGCCTATGGGAAGGAGAATGCTTTGTATTTGACAAGCGTGTCTCAGTTGAGCATGGTCTGGAGCAGGGCACATTCAAGCTTTGTTATGGGTGCAAGCAACCAGTGAGTGATGCTGACATGGAATCTCCCGAGTGGGAGTATGGAGTTTCTTGTCCTCACTGCTACTCAACGAAATCTGAAGAAGAGAAGGAGAGGGCAAGAGCTCGGCAAAGGCAATTTGAGACTTGGGGCATCATTGGTGGTCCGGACAAAGGCCGGCGACCAACACAAAGTGATAACAATATTAATCTTCCAAATTAAATTTGATCCTTTGCTGCTTAAGGTTCTTTTTTCATTTTTGTATTAGAGACTTACACAAAGGATAGATCAAAATGTCCATCTCCACCTTAATTATTGTCTTGTGTACAATATTATACCCTTTTTGTTGATTATGAAAAAATTGAGAAATTTTGGAACTTGGTCCTCTCTATTAAATGAATTTCGATACATCCAGATTCGAAGACTGTTTTTCTGGTTCTCTGTTTTCATGACACGTGAGCAACAAAGAAAGCCGTGAAGTGATGAGAACAAACAAAGATTTATTTCACTAAAATCGTTACAAGTATGGCTCCTTTCTGAGCTAAGAGATAGAGAAACATAAAAGAAAT

Coding sequence (CDS)

ATGTGGAGCGAAGAAAGGACGAAGAAGGCGAACGACTCGTCGTCCACAGCCTCCATGCTCAGATATAGAGCTTCTCCATTGCTAGCCCTGGGAATGGTATCGCCATTGCCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTTCTTCAAACCCTAATCTCATCACATTCAATCCCTCTTTCCCTATTCTGAAACCCTCCCTTTCTCTCCCTTCGCATCTATCCTCTTTCCTTCAGAAGCCCACTCGGAGTATGACTCATTCCAGATGCTTCTCTGGACCTTCTCCTACCGTTCCCATTCCCAGCGCATGCGAAGAGGAGGAGATGGATTCAGTCTCTCTTGTTGTTGTTTCCTTCTATAAGTTTGCTGATTTTCCTGACCATGCGGAATTTCGCTCGCCTTTGAAGAAGCTCTGCGAGGAACTGCGTGTTTCAGGAGGTATCATTCTCGCACCTGAAGGAATTAATGGGAGCATATGTGGATCACGAGAATCTGTCCGAAGGGTTCTTGGATTCATTGAAAGTGATGAACGGCTAAAAGAATTAAGGCAGGTGGAAACACCTGTTAGTCCTGAAGAAGAAGCCATCCACCACGGACATACTAGCAGTTCCCCTCTTGCAGCAGGGGAAGATGCACCTTTTCGTTGGGATCATGTCAGGGTCAAATTAAAGAAAGAGGATATGAGAATTGAAACGGAGGTAGATGTAGAATATAAGAGCACGGCTTGGTTTTCTTATTTGTTGATTTATATTCATTTATTGATGCTTTCGTCCCAATGCTATATTGTCACTCTTGGAATGCCTGTTATATCACCTGTTGAAAGGGTTGGACAATATGTGAAACCAAGGGATTGGAATGCACTGATAAGTGACCCAGATACTGTGGTTATTGATGTGCGAAATCACTACGAAACAAGGATTGGGAAGTTCAAAACAGCAGTTGATCCTTGTACTACAGCATTTCGAGATTTTCCAGCTTGGGTGGAGGATAGTTTCCAACTTCCTAAATCAGATTGCAAGTATTCAAATCAAGGAGTTGAAGAAGAAACAGTTAACCCTGAAGAGAACTCGCCTCCACGAGTTGCCATGTACTGTACTGGAGGAATCCGTTGTGAGAAAGCTTCAAGTTACCTCCTTAGCAAAGGCTTTAAAGAGGTTTATCATTTGGAAGGTGGAATTCTGAAATATCTGGAGGAAGTTCCAAAGTCAGAGAGCCTATGGGAAGGAGAATGCTTTGTATTTGACAAGCGTGTCTCAGTTGAGCATGGTCTGGAGCAGGGCACATTCAAGCTTTGTTATGGGTGCAAGCAACCAGTGAGTGATGCTGACATGGAATCTCCCGAGTGGGAGTATGGAGTTTCTTGTCCTCACTGCTACTCAACGAAATCTGAAGAAGAGAAGGAGAGGGCAAGAGCTCGGCAAAGGCAATTTGAGACTTGGGGCATCATTGGTGGTCCGGACAAAGGCCGGCGACCAACACAAAGTGATAACAATATTAATCTTCCAAATTAA

Protein sequence

MWSEERTKKANDSSSTASMLRYRASPLLALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFNPSFPILKPSLSLPSHLSSFLQKPTRSMTHSRCFSGPSPTVPIPSACEEEEMDSVSLVVVSFYKFADFPDHAEFRSPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQVETPVSPEEEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWFSYLLIYIHLLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKTAVDPCTTAFRDFPAWVEDSFQLPKSDCKYSNQGVEEETVNPEENSPPRVAMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLCYGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQFETWGIIGGPDKGRRPTQSDNNINLPN

Homology

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BLAST of Lsi04G010090 vs. Swiss-Prot
Match: STR7_ARATH (Rhodanese-like domain-containing protein 7 OS=Arabidopsis thaliana GN=STR7 PE=2 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 1.0e-143
Identity = 285/480 (59.38%), Postives = 332/480 (69.17%), Query Frame = 1


Query: 29  ALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFNPSFPILKPSLSLPSHLSSFLQ---KPT 88
           +L +V  L S     S S  S    N N +  N S P L+   S P  LSS      K T
Sbjct: 12  SLAVVRMLSSPPPPHSHSPFSGGGVNSNSVGGN-SKPELQFPQSQPHKLSSSPSSSLKST 71

Query: 89  RSMTHSRCFSGPSPTVPIPSACEEEEMDSV--SLVVVSFYKFADFPDHAEFRSPLKKLCE 148
            + +++        TV    +   E +DS   SLVVVSFYKFADFP+HA+FR PLK LCE
Sbjct: 72  VACSNAGAIRRSMATVSQAFSERTESIDSDLGSLVVVSFYKFADFPEHADFRKPLKDLCE 131

Query: 149 ELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQVETPVSPEEEAIHHGH 208
           +LRVSGGIILAPEGINGSICG RESV  VL FI+ D RL  LRQVETPVSPE+EAIHHGH
Sbjct: 132 KLRVSGGIILAPEGINGSICGIRESVEEVLAFIQRDVRLNGLRQVETPVSPEQEAIHHGH 191

Query: 209 TSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWFSYLLIYIHLLMLSSQC 268
           +SSSPLAAGED            + + +R++ + +                         
Sbjct: 192 SSSSPLAAGED---------APFRWDHVRVKLKKE------------------------- 251

Query: 269 YIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKTAVDPCTTA 328
            IVTLG+P +SP+ERVG YV P +WN LISDP+TVVIDVRN YETRIGKFK AVDPCTTA
Sbjct: 252 -IVTLGIPSVSPIERVGTYVSPEEWNELISDPETVVIDVRNTYETRIGKFKGAVDPCTTA 311

Query: 329 FRDFPAWVEDSFQLPK----SDCKYSNQGVEEETVNPEE----NSPPRVAMYCTGGIRCE 388
           FR+FP+WVE+ F L +    +  K   +   E T   ++     + PR+AMYCTGGIRCE
Sbjct: 312 FRNFPSWVENQFALKQEGNETQAKVEKEDFSEITHKEDKAEKPKTLPRIAMYCTGGIRCE 371

Query: 389 KASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLC 448
           KASS LLS+GF+EVYHL+GGILKYLEEVPK+ESLWEGECFVFDKRVSVEHGL QGT KLC
Sbjct: 372 KASSLLLSQGFEEVYHLKGGILKYLEEVPKTESLWEGECFVFDKRVSVEHGLAQGTHKLC 431

Query: 449 YGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQFETWGIIGGPDKGRRP 496
           YGCKQP+SD DME+PE+EYGVSCP+CYS KSEEEKERARARQ QFE WG+IGGPDKGRRP
Sbjct: 432 YGCKQPISDEDMEAPEYEYGVSCPYCYSKKSEEEKERARARQTQFEEWGVIGGPDKGRRP 455

[Close]

BLAST of Lsi04G010090 vs. Swiss-Prot
Match: Y4491_AGRFC (UPF0176 protein Atu4491 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=Atu4491 PE=3 SV=2)

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-67
Identity = 122/217 (56.22%), Postives = 154/217 (70.97%), Query Frame = 1


Query: 265 IVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKTAVDPCTTAF 324
           IVT+G+P I P   VG YV PRDWNALISDPDT+VID RN YET IG FK AVDP T  F
Sbjct: 107 IVTMGVPDIDPNRIVGTYVDPRDWNALISDPDTIVIDTRNDYETAIGVFKGAVDPQTKTF 166

Query: 325 RDFPAWVEDSFQLPKSDCKYSNQGVEEETVNPEENSPPRVAMYCTGGIRCEKASSYLLSK 384
           R+FP WV++                     NP  ++ P++AMYCTGGIRCEKA++++  +
Sbjct: 167 REFPDWVKN---------------------NPGLHNKPKIAMYCTGGIRCEKATAFMKEQ 226

Query: 385 GFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLCYGCKQPVSD 444
           GF EVYHL+GGILKYLEEVP+ ESLWEG CFVFD+RVSV HGL +G  +LC+ C+ P++ 
Sbjct: 227 GFDEVYHLKGGILKYLEEVPEEESLWEGACFVFDERVSVVHGLAEGDHQLCHACRNPITP 286

Query: 445 ADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQFE 482
               SP++E GVSCP CY  +SE++++R R RQ+Q E
Sbjct: 287 DVRLSPKFEEGVSCPSCYDERSEDDRQRFRDRQQQIE 302

[Close]

BLAST of Lsi04G010090 vs. Swiss-Prot
Match: Y2319_METFK (UPF0176 protein Mfla_2319 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla_2319 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.5e-67
Identity = 130/254 (51.18%), Postives = 171/254 (67.32%), Query Frame = 1


Query: 228 KEDMRIETEVDVEYKSTAWFSYLLIYIHLLMLSSQCYIVTLGMPVISPVERVGQYVKPRD 287
           ++D R+   VD+++K + +   +  Y   + L  +  IVTLG+P ISP ++VG YVKP D
Sbjct: 64  RQDSRM---VDIDHKES-FADEMPFYRMKVRLKKE--IVTLGVPGISPNKKVGTYVKPED 123

Query: 288 WNALISDPDTVVIDVRNHYETRIGKFKTAVDPCTTAFRDFPAWVEDSFQLPKSDCKYSNQ 347
           WN LISDPD VVID RN+YE  IG FK A+DP TT FR FP +V                
Sbjct: 124 WNTLISDPDVVVIDTRNNYEYEIGTFKGAIDPATTTFRQFPEFVR--------------- 183

Query: 348 GVEEETVNPEENSPPRVAMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKYLEEVPKSE 407
               + ++P +N   +VAM+CTGGIRCEKASSY+L +GFKEVYHL+GGILKYLE +P+ E
Sbjct: 184 ----KNLDPAKNK--KVAMFCTGGIRCEKASSYMLEQGFKEVYHLQGGILKYLETIPEEE 243

Query: 408 SLWEGECFVFDKRVSVEHGLEQGTFKLCYGCKQPVSDADMESPEWEYGVSCPHCYSTKSE 467
           SLWEGECFVFD+RV+V+HGL+ G +  C+ C+ P+S ADM S ++  G+SCP CY   S 
Sbjct: 244 SLWEGECFVFDQRVAVKHGLQVGDYDQCFACRHPISAADMASSKYVKGISCPRCYDRMSA 290

Query: 468 EEKERARARQRQFE 482
           E++ R   RQRQ E
Sbjct: 304 EKRARIAERQRQIE 290

[Close]

BLAST of Lsi04G010090 vs. Swiss-Prot
Match: Y2887_RHIME (UPF0176 protein R02887 OS=Rhizobium meliloti (strain 1021) GN=R02887 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.0e-67
Identity = 120/215 (55.81%), Postives = 157/215 (73.02%), Query Frame = 1


Query: 265 IVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKTAVDPCTTAF 324
           IVT+G+  I P + VG YV+P+DWNALISDP+T+VID RN YET IG F+ AVDP T  F
Sbjct: 108 IVTMGVENIDPKKVVGTYVEPKDWNALISDPETLVIDTRNDYETAIGLFQGAVDPKTKTF 167

Query: 325 RDFPAWVEDSFQLPKSDCKYSNQGVEEETVNPEENSPPRVAMYCTGGIRCEKASSYLLSK 384
           R+FP WV             +N G+         ++ P++AMYCTGGIRCEKA++++  +
Sbjct: 168 REFPEWVR------------NNSGL---------HNKPKIAMYCTGGIRCEKATAFMKEQ 227

Query: 385 GFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLCYGCKQPVSD 444
           GF+EVYHL+GGILKYLEE+P  ESLWEG CFVFD+RVSV HGL++G   LC+ C+QP++ 
Sbjct: 228 GFEEVYHLKGGILKYLEEIPPEESLWEGACFVFDERVSVTHGLQEGEHTLCHACRQPLTP 287

Query: 445 ADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQ 480
            D++SP  E GVSC HC+ T++EE++ER R RQRQ
Sbjct: 288 EDLQSPLHEEGVSCIHCHDTRTEEDRERYRQRQRQ 301

[Close]

BLAST of Lsi04G010090 vs. Swiss-Prot
Match: Y3638_RHIEC (UPF0176 protein RHE_CH03638 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=RHE_CH03638 PE=3 SV=2)

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-66
Identity = 121/215 (56.28%), Postives = 154/215 (71.63%), Query Frame = 1


Query: 265 IVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKTAVDPCTTAF 324
           IVT+G+  I P + VG YV PRDWNALISDPDT+VID RN YET IG F+ A+DP T  F
Sbjct: 102 IVTMGVEDIDPNKVVGTYVAPRDWNALISDPDTIVIDTRNDYETAIGTFRGALDPKTKTF 161

Query: 325 RDFPAWVEDSFQLPKSDCKYSNQGVEEETVNPEENSPPRVAMYCTGGIRCEKASSYLLSK 384
           R+FP WV              N G+  +         P+VAMYCTGGIRCEKA++++ ++
Sbjct: 162 REFPDWVR------------RNTGLHNK---------PKVAMYCTGGIRCEKATAFMKAE 221

Query: 385 GFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLCYGCKQPVSD 444
           GF EVYHL+GGILKYLEEVP+ ESLWEG CFVFD+RVSVEHGL++G  +LC+ C+ P++ 
Sbjct: 222 GFDEVYHLKGGILKYLEEVPQEESLWEGACFVFDERVSVEHGLKEGEHRLCHACRNPITS 281

Query: 445 ADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQ 480
            ++ SP +E GVSC HCY T++EE++ R R RQ Q
Sbjct: 282 EEITSPLYEEGVSCSHCYHTRTEEDRLRYRQRQLQ 295

[Close]

BLAST of Lsi04G010090 vs. TrEMBL
Match: A0A0A0KM63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223080 PE=3 SV=1)

HSP 1 Score: 753.4 bits (1944), Expect = 1.7e-214
Identity = 391/491 (79.63%), Postives = 419/491 (85.34%), Query Frame = 1


Query: 19  MLRYRASPLLALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFN--PSFPILKPSLSLPSH 78
           ++RYRA PL  LGMVSP PSSSSSS SS SS FSSN NLI+FN  PSFPI +P LS PS 
Sbjct: 2   LIRYRAPPLFPLGMVSPFPSSSSSSFSSLSS-FSSNSNLISFNFSPSFPIPRPFLSFPSL 61

Query: 79  LSSFLQKPTRSMTHSRCFSGPSPTVPIPSACEE-EEMDSVSLVVVSFYKFADFPDHAEFR 138
           LS+FL KP RSMTHS CFSGPSPT PI S+ EE E+++S SLVVVSFYKFADFPDHAEFR
Sbjct: 62  LSAFLHKPCRSMTHSVCFSGPSPTAPIHSSSEESEDVESASLVVVSFYKFADFPDHAEFR 121

Query: 139 SPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQVETPVSPE 198
            PLKKLCEELRVSGGIILAPEGINGSICGSRESV+RVLGFI+SDERLK LRQVETPVSPE
Sbjct: 122 LPLKKLCEELRVSGGIILAPEGINGSICGSRESVQRVLGFIQSDERLKGLRQVETPVSPE 181

Query: 199 EEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWFSYLLIYIH 258
           EEAIH+GHTSSSPLAAGED            + + +R++ + +                 
Sbjct: 182 EEAIHNGHTSSSPLAAGED---------APFRWDHVRVKLKKE----------------- 241

Query: 259 LLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKT 318
                    IVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKT
Sbjct: 242 ---------IVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKT 301

Query: 319 AVDPCTTAFRDFPAWVEDSFQLPKSDCKYSNQGVEEETVNPEENSPPRVAMYCTGGIRCE 378
           AVDPCTTAFRDFPAWVED  QLPK DCK+SNQG  EETVNP+E+SPPRVAMYCTGGIRCE
Sbjct: 302 AVDPCTTAFRDFPAWVEDKLQLPKLDCKHSNQG-GEETVNPKESSPPRVAMYCTGGIRCE 361

Query: 379 KASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLC 438
           KASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLC
Sbjct: 362 KASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLC 421

Query: 439 YGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQFETWGIIGGPDKGRRP 498
           YGCKQPVSDADMESPEWEYGVSCP+C+STKSEEEKERARARQRQFETWGIIGGPDKGRRP
Sbjct: 422 YGCKQPVSDADMESPEWEYGVSCPYCFSTKSEEEKERARARQRQFETWGIIGGPDKGRRP 455

Query: 499 TQSDNNINLPN 507
           TQ+D+N++ PN
Sbjct: 482 TQNDDNVSHPN 455

[Close]

BLAST of Lsi04G010090 vs. TrEMBL
Match: A0A0D2UVX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G206700 PE=3 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 1.3e-164
Identity = 322/502 (64.14%), Postives = 370/502 (73.71%), Query Frame = 1


Query: 13  SSSTASMLRYRASPLLALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFNPSFPILKPSLS 72
           S S   MLR  +  LLAL M+S       SSS SSSS F SNP L    PS P  +P   
Sbjct: 3   SISYHMMLRCGSPLLLALRMLS-------SSSPSSSSLFFSNPKLYHL-PSSP--QPLFV 62

Query: 73  LP--SHLSSFLQKP-TRSMTHSRCFSGPSPTVPIPSACEE--EEMDSVSLVVVSFYKFAD 132
           LP  S LS F      + MT S CFS  +   PIP++        DS SLVVVSFYKFAD
Sbjct: 63  LPFNSPLSGFCASSHPQRMTLSMCFSATTAADPIPTSDPHPPHSPDSQSLVVVSFYKFAD 122

Query: 133 FPDHAEFRSPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQ 192
           FPDHA+ R PLK+LC++L VSGGIILAPEGINGSICG+RESV RVL FI++D+RLK LRQ
Sbjct: 123 FPDHADLRKPLKQLCQDLYVSGGIILAPEGINGSICGTRESVERVLMFIQTDDRLKGLRQ 182

Query: 193 VETPVSPEEEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWF 252
           +E+PVSPE+EAIHHGH+SSSPLAAGEDAPFRWDHVRVKLKKE    E             
Sbjct: 183 IESPVSPEQEAIHHGHSSSSPLAAGEDAPFRWDHVRVKLKKEVFCFEA------------ 242

Query: 253 SYLLIYIHLLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYE 312
           S+L + I        C +        SP+E+VG+YV P DWNALISDPDTVVIDVRN+YE
Sbjct: 243 SHLFVTI--------CDV--------SPIEKVGKYVSPGDWNALISDPDTVVIDVRNNYE 302

Query: 313 TRIGKFKTAVDPCTTAFRDFPAWVEDSFQLPKSDCKY-------SNQGVEEETVNPEENS 372
           TRIG FK AVDPCTTAFRDFP+WVE+ FQ   ++ ++       SN+ + E+    +   
Sbjct: 303 TRIGMFKGAVDPCTTAFRDFPSWVEEQFQPDAANVEHAEMEKEGSNESINEDAEISKPKM 362

Query: 373 PPRVAMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKR 432
           P RVAMYCTGGIRCEKA+S++LSKGF+EVYHL+GGILKYLEE+PK+ESLWEGECFVFDKR
Sbjct: 363 PKRVAMYCTGGIRCEKATSFMLSKGFEEVYHLKGGILKYLEEIPKTESLWEGECFVFDKR 422

Query: 433 VSVEHGLEQGTFKLCYGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQF 492
           V+VEHGL QG FKLCYGCKQPVSDADME+PEWEYGVSCP+CYSTKSEEEKERARARQRQF
Sbjct: 423 VAVEHGLIQGNFKLCYGCKQPVSDADMEAPEWEYGVSCPYCYSTKSEEEKERARARQRQF 466

Query: 493 ETWGIIGGPDKGRRPTQSDNNI 503
           E WGIIGGPDKGRRP    ++I
Sbjct: 483 EAWGIIGGPDKGRRPAAKADSI 466

[Close]

BLAST of Lsi04G010090 vs. TrEMBL
Match: A0A061FZI0_THECC (Rhodanese/Cell cycle control phosphatase superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_045558 PE=3 SV=1)

HSP 1 Score: 574.7 bits (1480), Expect = 1.1e-160
Identity = 307/498 (61.65%), Postives = 364/498 (73.09%), Query Frame = 1


Query: 19  MLRYRASPLLALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFNPSFPILKPSLSLPSHLS 78
           MLR R    LAL M+S             SSS +SNPN I   P        L L + LS
Sbjct: 1   MLRCRPPLSLALRMLS-------------SSSHTSNPNPIFHLPCTSRPTSGLPLKARLS 60

Query: 79  SFLQKPTRSMTHSRCFSGPSPT-VPI-----PSACEE-EEMDSVSLVVVSFYKFADFPDH 138
           +      R MT S+CF+G +   +P+     P  C+  EE DS SLVVVSFY+FADFPDH
Sbjct: 61  NSCSSDRR-MTLSKCFTGAAADPIPVSSSGKPHCCQNPEEPDSDSLVVVSFYRFADFPDH 120

Query: 139 AEFRSPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQVETP 198
           A+ R PLKKLCE+LRVSGGIILAPEGINGSICG+RESV RVLGFI++D+RLK LRQ+E+P
Sbjct: 121 ADLRKPLKKLCEDLRVSGGIILAPEGINGSICGTRESVERVLGFIQTDDRLKGLRQIESP 180

Query: 199 VSPEEEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWFSYLL 258
           VSPE+EAIHHGH++SSPLAAGED            + + +R++ + +             
Sbjct: 181 VSPEQEAIHHGHSTSSPLAAGED---------APFRWDHVRVKLKKE------------- 240

Query: 259 IYIHLLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIG 318
                        IVTLGMP +SP+E+VG+YV P+DWNALISDPDTVVIDVRN+YETRIG
Sbjct: 241 -------------IVTLGMPEVSPIEKVGKYVSPKDWNALISDPDTVVIDVRNNYETRIG 300

Query: 319 KFKTAVDPCTTAFRDFPAWVEDSFQLPKSDCKYSNQGVE--EETVN-----PEENSPPRV 378
            FK AVDPCTTAFR+FP WVED F+L  S+ +++N   +  +E++N     P++  P RV
Sbjct: 301 MFKGAVDPCTTAFREFPPWVEDQFRLDGSELEHANMEKKGLDESINKDAEIPKQKMPKRV 360

Query: 379 AMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVE 438
           AMYCTGGIRCEKASS+LL+KGF+EVYHL+GGILKYLEEVPK+ESLWEGECFVFDKRVSVE
Sbjct: 361 AMYCTGGIRCEKASSFLLNKGFEEVYHLKGGILKYLEEVPKTESLWEGECFVFDKRVSVE 420

Query: 439 HGLEQGTFKLCYGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQFETWG 498
           HGL QG FKLCYGCKQPVSDADME+PEWEYGVSCPHC+ +KSEEEKERARARQRQFETWG
Sbjct: 421 HGLVQGNFKLCYGCKQPVSDADMEAPEWEYGVSCPHCFLSKSEEEKERARARQRQFETWG 449

Query: 499 IIGGPDKGRRPTQSDNNI 503
           IIGG DKGRRP    ++I
Sbjct: 481 IIGGLDKGRRPASKPDSI 449

[Close]

BLAST of Lsi04G010090 vs. TrEMBL
Match: V4VAD7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031468mg PE=3 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 3.2e-160
Identity = 310/500 (62.00%), Postives = 358/500 (71.60%), Query Frame = 1


Query: 19  MLRYRASPLLALGMVSPLPSSSSSSSSSSSSSFSSNPNL-ITFNPSFPILKPS--LSLPS 78
           M+RYR+ PLLAL M+S         S +S    + NP L  T  P+    + S  +S P 
Sbjct: 1   MIRYRSPPLLALRMLS---------SCTSHPKPNPNPRLHFTLKPTSQNSQTSQLISNPI 60

Query: 79  HLSSFLQKPTRSMTHSRCFSGPSPTVPIP-------SACEEEEMDSVSLVVVSFYKFADF 138
            +S  +Q  T       CF+G +    I        S  E  + +S SLVV+SFYKFADF
Sbjct: 61  RISQAMQVSTS------CFTGSTDPTTISGRPVLTNSVPESGDPNSSSLVVISFYKFADF 120

Query: 139 PDHAEFRSPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQV 198
           PDHA  R PLK+LCEELRVSGGIILAPEGINGSICG+RESV RVLGFI+SDE LK LRQ+
Sbjct: 121 PDHANLRKPLKRLCEELRVSGGIILAPEGINGSICGTRESVERVLGFIQSDEHLKGLRQI 180

Query: 199 ETPVSPEEEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWFS 258
           E+PVSPEEEAIHHGHTS+SPLAAGED            + + +R++ + +          
Sbjct: 181 ESPVSPEEEAIHHGHTSNSPLAAGED---------APFRWDHVRVKLKKE---------- 240

Query: 259 YLLIYIHLLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYET 318
                           IVTLGMP ++P+ERVG+YVKPR+WNALISDPDTVVIDVRN YET
Sbjct: 241 ----------------IVTLGMPTVAPIERVGKYVKPREWNALISDPDTVVIDVRNDYET 300

Query: 319 RIGKFKTAVDPCTTAFRDFPAWVEDSFQLPKSDCKYSNQGVEEETVN-----PEENSPPR 378
           RIGKFK AVDP TTAFR+FP+WVED FQ  K+  K S   + +E  +     P++  P R
Sbjct: 301 RIGKFKGAVDPVTTAFREFPSWVEDQFQNDKTTHKESKVEITDEITDKEVGSPKKRMPKR 360

Query: 379 VAMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSV 438
           VAMYCTGGIRCEKASS+LLSKGF+EVYHLEGGILKYLEEVPK ESLWEGECFVFDKRVSV
Sbjct: 361 VAMYCTGGIRCEKASSFLLSKGFEEVYHLEGGILKYLEEVPKKESLWEGECFVFDKRVSV 420

Query: 439 EHGLEQGTFKLCYGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQFETW 498
           +HGL QGTFKLCYGCKQPVSDADMESP WEYGV+CP+CYS+KSEEEKERARARQRQFETW
Sbjct: 421 KHGLVQGTFKLCYGCKQPVSDADMESPLWEYGVTCPYCYSSKSEEEKERARARQRQFETW 450

Query: 499 GIIGGPDKGRRPTQSDNNIN 504
           GIIGGPDKGRRP    + IN
Sbjct: 481 GIIGGPDKGRRPRSKPDGIN 450

[Close]

BLAST of Lsi04G010090 vs. TrEMBL
Match: B9S4H2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0690200 PE=3 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 7.1e-160
Identity = 311/507 (61.34%), Postives = 365/507 (71.99%), Query Frame = 1


Query: 21  RYRASPLLALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFNPSFPILKPSLSLPS----- 80
           R RA PLL+L M+S           S+SSSF    +L  F  S   +KPS   P+     
Sbjct: 4   RCRAPPLLSLRMIS-----------SASSSFPHTLDLRRFLLS---IKPSSQTPNSSSHQ 63

Query: 81  -HLSSF--------LQKPTRSMTHSRCFS--GPSPTVPIPSACEEEEMDS---VSLVVVS 140
            HL  F        L+K  R+MT  +CFS  G + T P+P     E  D     SLVVVS
Sbjct: 64  HHLPPFSTISPFDSLKKLPRNMTFPKCFSTYGAAATPPVPILDTPELNDPNPLTSLVVVS 123

Query: 141 FYKFADFPDHAEFRSPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDER 200
           FYKFADFPDHA+ R PLK+LCE LRVSGGIILAPEGINGSICG+RESV +VL FI+SD+R
Sbjct: 124 FYKFADFPDHADMRKPLKELCERLRVSGGIILAPEGINGSICGTRESVEKVLDFIKSDDR 183

Query: 201 LKELRQVETPVSPEEEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEY 260
           LK LRQ+E+PVSPEEEA+HHGH+SSSPLAAG+D            + + +R++ + +   
Sbjct: 184 LKGLRQMESPVSPEEEAVHHGHSSSSPLAAGDD---------APFRWDHVRVKLKKE--- 243

Query: 261 KSTAWFSYLLIYIHLLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVID 320
                                  IVTLGMP +SP+ERVG+YVKP++WN LI+DPDTVVID
Sbjct: 244 -----------------------IVTLGMPTVSPIERVGKYVKPKEWNELINDPDTVVID 303

Query: 321 VRNHYETRIGKFKTAVDPCTTAFRDFPAWVEDSFQLPKS-DCKYSNQGVEEETVNPEENS 380
           VRN+YETRIGKFK AVDPCT +FR+FP+WVE+ FQL  + +  +S    + E  +P+   
Sbjct: 304 VRNNYETRIGKFKGAVDPCTASFREFPSWVENQFQLSDTGEVDHSEGNNDTEVKSPKAKM 363

Query: 381 PPRVAMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKR 440
           P RVAMYCTGGIRCEKASS+LLSKGF EVYHLEGGILKYLEEVPKSES WEGECFVFDKR
Sbjct: 364 PRRVAMYCTGGIRCEKASSFLLSKGFNEVYHLEGGILKYLEEVPKSESWWEGECFVFDKR 423

Query: 441 VSVEHGLEQGTFKLCYGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQF 500
           V+VEHGL+QGTFKLCYGCKQPVSDADME+PEWE+GVSCPHCYS KSEEEKERARARQRQF
Sbjct: 424 VAVEHGLQQGTFKLCYGCKQPVSDADMEAPEWEHGVSCPHCYSLKSEEEKERARARQRQF 461

Query: 501 ETWGIIGGPDKGRRPT-QSDNNINLPN 507
           ETWGIIGGPDKGR+PT + D+N N  N
Sbjct: 484 ETWGIIGGPDKGRQPTSKPDSNENNSN 461

[Close]

BLAST of Lsi04G010090 vs. TAIR10
Match: AT2G40760.1 (AT2G40760.1 Rhodanese/Cell cycle control phosphatase superfamily protein)

HSP 1 Score: 511.5 bits (1316), Expect = 5.8e-145
Identity = 285/480 (59.38%), Postives = 332/480 (69.17%), Query Frame = 1


Query: 29  ALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFNPSFPILKPSLSLPSHLSSFLQ---KPT 88
           +L +V  L S     S S  S    N N +  N S P L+   S P  LSS      K T
Sbjct: 12  SLAVVRMLSSPPPPHSHSPFSGGGVNSNSVGGN-SKPELQFPQSQPHKLSSSPSSSLKST 71

Query: 89  RSMTHSRCFSGPSPTVPIPSACEEEEMDSV--SLVVVSFYKFADFPDHAEFRSPLKKLCE 148
            + +++        TV    +   E +DS   SLVVVSFYKFADFP+HA+FR PLK LCE
Sbjct: 72  VACSNAGAIRRSMATVSQAFSERTESIDSDLGSLVVVSFYKFADFPEHADFRKPLKDLCE 131

Query: 149 ELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQVETPVSPEEEAIHHGH 208
           +LRVSGGIILAPEGINGSICG RESV  VL FI+ D RL  LRQVETPVSPE+EAIHHGH
Sbjct: 132 KLRVSGGIILAPEGINGSICGIRESVEEVLAFIQRDVRLNGLRQVETPVSPEQEAIHHGH 191

Query: 209 TSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWFSYLLIYIHLLMLSSQC 268
           +SSSPLAAGED            + + +R++ + +                         
Sbjct: 192 SSSSPLAAGED---------APFRWDHVRVKLKKE------------------------- 251

Query: 269 YIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKTAVDPCTTA 328
            IVTLG+P +SP+ERVG YV P +WN LISDP+TVVIDVRN YETRIGKFK AVDPCTTA
Sbjct: 252 -IVTLGIPSVSPIERVGTYVSPEEWNELISDPETVVIDVRNTYETRIGKFKGAVDPCTTA 311

Query: 329 FRDFPAWVEDSFQLPK----SDCKYSNQGVEEETVNPEE----NSPPRVAMYCTGGIRCE 388
           FR+FP+WVE+ F L +    +  K   +   E T   ++     + PR+AMYCTGGIRCE
Sbjct: 312 FRNFPSWVENQFALKQEGNETQAKVEKEDFSEITHKEDKAEKPKTLPRIAMYCTGGIRCE 371

Query: 389 KASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLC 448
           KASS LLS+GF+EVYHL+GGILKYLEEVPK+ESLWEGECFVFDKRVSVEHGL QGT KLC
Sbjct: 372 KASSLLLSQGFEEVYHLKGGILKYLEEVPKTESLWEGECFVFDKRVSVEHGLAQGTHKLC 431

Query: 449 YGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQFETWGIIGGPDKGRRP 496
           YGCKQP+SD DME+PE+EYGVSCP+CYS KSEEEKERARARQ QFE WG+IGGPDKGRRP
Sbjct: 432 YGCKQPISDEDMEAPEYEYGVSCPYCYSKKSEEEKERARARQTQFEEWGVIGGPDKGRRP 455

[Close]

BLAST of Lsi04G010090 vs. TAIR10
Match: AT1G09280.1 (AT1G09280.1 Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645))

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-20
Identity = 59/155 (38.06%), Postives = 81/155 (52.26%), Query Frame = 1


Query: 289 NALISDPDTVVIDVRNHYETRIGKFKT----AVDPCTTAFRDFPAWVEDSFQLPKSDCKY 348
           N    + + V++D RN YETRIGKF++     +DP    + D P W++            
Sbjct: 154 NGKSENKELVLLDARNLYETRIGKFESENVETLDPEIRQYSDLPTWIDQ----------- 213

Query: 349 SNQGVEEETVNPEENSPPRVAMYCTGGIRCEKASSYLLSK--GFKEVYHLEGGILKYLEE 408
                     N E+     V MYCTGGIRCE AS+Y+ SK  GF+  + L GGI +YLE+
Sbjct: 214 ----------NAEKMKGKNVLMYCTGGIRCEMASAYIRSKGAGFENTFQLYGGIQRYLEQ 273

Query: 409 VPKSESLWEGECFVFDKRVSVEHGLEQ--GTFKLC 436
            P S   ++G+ FVFD R+SV    E   G+  LC
Sbjct: 274 FP-SGGFFKGKNFVFDHRISVGSSKEDIIGSCLLC 286

[Close]

BLAST of Lsi04G010090 vs. TAIR10
Match: AT1G17850.2 (AT1G17850.2 Rhodanese/Cell cycle control phosphatase superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-16
Identity = 60/218 (27.52%), Postives = 97/218 (44.50%), Query Frame = 1


Query: 270 MPVISPVERVGQYVKPRDWNALISD-------------PDTVVIDVRNHYETRIGKFKTA 329
           +P++ P  R  + ++P +W   + D                +++DVRN YE  +G F+ A
Sbjct: 185 LPLLDPPMRA-KPLEPSEWKRKLKDLTDDDEASPSNSGKSYILLDVRNGYEWDVGHFRGA 244

Query: 330 VDPCTTAFRDFPAWVEDSFQLPKSDCKYSNQGVEEETVNPEENSPPRVAMYCTGGIRCEK 389
             P    FR+    + D  + P            +  +N ++     + MYCTGGIRC+ 
Sbjct: 245 HRPEVDCFRNTSFGLSDEKEAPS-----------DPLINVDKEKTD-ILMYCTGGIRCDV 304

Query: 390 ASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLCY 449
            S+ L  +GFK +Y L+GG+  YL+E   +E  W G  FVFD R+S+          +  
Sbjct: 305 YSTVLRQRGFKNLYTLKGGVSHYLKEEGTAE--WVGNLFVFDSRLSLPPAAYNDNV-VDK 364

Query: 450 GCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERAR 475
                V D    +P+     S   CY   S+ ++ R R
Sbjct: 365 AVGDNVVDEAGRTPQTPVDTSFARCYLCNSQVQELRHR 386

[Close]

BLAST of Lsi04G010090 vs. NCBI nr
Match: gi|778701590|ref|XP_004146431.2| (PREDICTED: rhodanese-like domain-containing protein 7 [Cucumis sativus])

HSP 1 Score: 753.4 bits (1944), Expect = 2.5e-214
Identity = 391/491 (79.63%), Postives = 419/491 (85.34%), Query Frame = 1


Query: 19  MLRYRASPLLALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFN--PSFPILKPSLSLPSH 78
           ++RYRA PL  LGMVSP PSSSSSS SS SS FSSN NLI+FN  PSFPI +P LS PS 
Sbjct: 2   LIRYRAPPLFPLGMVSPFPSSSSSSFSSLSS-FSSNSNLISFNFSPSFPIPRPFLSFPSL 61

Query: 79  LSSFLQKPTRSMTHSRCFSGPSPTVPIPSACEE-EEMDSVSLVVVSFYKFADFPDHAEFR 138
           LS+FL KP RSMTHS CFSGPSPT PI S+ EE E+++S SLVVVSFYKFADFPDHAEFR
Sbjct: 62  LSAFLHKPCRSMTHSVCFSGPSPTAPIHSSSEESEDVESASLVVVSFYKFADFPDHAEFR 121

Query: 139 SPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQVETPVSPE 198
            PLKKLCEELRVSGGIILAPEGINGSICGSRESV+RVLGFI+SDERLK LRQVETPVSPE
Sbjct: 122 LPLKKLCEELRVSGGIILAPEGINGSICGSRESVQRVLGFIQSDERLKGLRQVETPVSPE 181

Query: 199 EEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWFSYLLIYIH 258
           EEAIH+GHTSSSPLAAGED            + + +R++ + +                 
Sbjct: 182 EEAIHNGHTSSSPLAAGED---------APFRWDHVRVKLKKE----------------- 241

Query: 259 LLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKT 318
                    IVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKT
Sbjct: 242 ---------IVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKT 301

Query: 319 AVDPCTTAFRDFPAWVEDSFQLPKSDCKYSNQGVEEETVNPEENSPPRVAMYCTGGIRCE 378
           AVDPCTTAFRDFPAWVED  QLPK DCK+SNQG  EETVNP+E+SPPRVAMYCTGGIRCE
Sbjct: 302 AVDPCTTAFRDFPAWVEDKLQLPKLDCKHSNQG-GEETVNPKESSPPRVAMYCTGGIRCE 361

Query: 379 KASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLC 438
           KASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLC
Sbjct: 362 KASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLC 421

Query: 439 YGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQFETWGIIGGPDKGRRP 498
           YGCKQPVSDADMESPEWEYGVSCP+C+STKSEEEKERARARQRQFETWGIIGGPDKGRRP
Sbjct: 422 YGCKQPVSDADMESPEWEYGVSCPYCFSTKSEEEKERARARQRQFETWGIIGGPDKGRRP 455

Query: 499 TQSDNNINLPN 507
           TQ+D+N++ PN
Sbjct: 482 TQNDDNVSHPN 455

[Close]

BLAST of Lsi04G010090 vs. NCBI nr
Match: gi|659114244|ref|XP_008456970.1| (PREDICTED: LOW QUALITY PROTEIN: rhodanese-like domain-containing protein 7 [Cucumis melo])

HSP 1 Score: 725.3 bits (1871), Expect = 7.2e-206
Identity = 379/488 (77.66%), Postives = 409/488 (83.81%), Query Frame = 1


Query: 19  MLRYRASPLLALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFN--PSFPILKPSLSLPSH 78
           ++RYRA PLLALGMVSPLPSSSSSS       FSSN NLI+FN  PSFP+ KPS S PS 
Sbjct: 2   LIRYRAPPLLALGMVSPLPSSSSSS-------FSSNTNLISFNFSPSFPVPKPSSSFPSL 61

Query: 79  LSSFLQKPTRSMTHSRCFSGPSPTVPIPSACEE-EEMDSVSLVVVSFYKFADFPDHAEFR 138
           LSSF+ KP+RSMTHS CFSGPSPT PI S+CEE E+MDS+SLVVVSFYKFA FPDHAEFR
Sbjct: 62  LSSFVHKPSRSMTHSICFSGPSPTAPIHSSCEESEDMDSISLVVVSFYKFAHFPDHAEFR 121

Query: 139 SPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQVETPVSPE 198
           SPLKKLCEELRV GGIILAPEGINGSICGSRESV+RVLGFIESDERLK LRQVET VSPE
Sbjct: 122 SPLKKLCEELRVLGGIILAPEGINGSICGSRESVQRVLGFIESDERLKGLRQVETSVSPE 181

Query: 199 EEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWFSYLLIYIH 258
           EEAIH+GHTSSSPLAAGED            + + +R++ + +                 
Sbjct: 182 EEAIHNGHTSSSPLAAGED---------APFRWDHVRVKLKKE----------------- 241

Query: 259 LLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIGKFKT 318
                    IVTLGMPVISPVERVGQYVKPRD N+LISDPDTVV DV+NHYETRI KFKT
Sbjct: 242 ---------IVTLGMPVISPVERVGQYVKPRDXNSLISDPDTVVTDVQNHYETRIEKFKT 301

Query: 319 AVDPCTTAFRDFPAWVEDSFQLPKSDCKYSNQGVEEETVNPEENSPPRVAMYCTGGIRCE 378
           AVDP TTAFRDFPAWVED FQLPK DCK+SNQG +EETVNPEE+SP RVAMYCTGGIRCE
Sbjct: 302 AVDPSTTAFRDFPAWVEDKFQLPKLDCKHSNQG-DEETVNPEESSPLRVAMYCTGGIRCE 361

Query: 379 KASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVEHGLEQGTFKLC 438
           KASSYLL KGFKEVYHLEGGILKYLEEVP+SESL EGECFVFDKR SVEHGLEQGTFKLC
Sbjct: 362 KASSYLLRKGFKEVYHLEGGILKYLEEVPRSESLREGECFVFDKRDSVEHGLEQGTFKLC 421

Query: 439 YGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQFETWGIIGGPDKGRRP 498
           YG KQPVSDADMESP+WEYGVSCP+C+S KS+EEKERARARQRQFETWGIIGGPDKGRRP
Sbjct: 422 YGYKQPVSDADMESPQWEYGVSCPYCFSMKSDEEKERARARQRQFETWGIIGGPDKGRRP 446

Query: 499 TQSDNNIN 504
           TQ+DNN+N
Sbjct: 482 TQNDNNVN 446

[Close]

BLAST of Lsi04G010090 vs. NCBI nr
Match: gi|763806031|gb|KJB72969.1| (hypothetical protein B456_011G206700 [Gossypium raimondii])

HSP 1 Score: 587.8 bits (1514), Expect = 1.8e-164
Identity = 322/502 (64.14%), Postives = 370/502 (73.71%), Query Frame = 1


Query: 13  SSSTASMLRYRASPLLALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFNPSFPILKPSLS 72
           S S   MLR  +  LLAL M+S       SSS SSSS F SNP L    PS P  +P   
Sbjct: 3   SISYHMMLRCGSPLLLALRMLS-------SSSPSSSSLFFSNPKLYHL-PSSP--QPLFV 62

Query: 73  LP--SHLSSFLQKP-TRSMTHSRCFSGPSPTVPIPSACEE--EEMDSVSLVVVSFYKFAD 132
           LP  S LS F      + MT S CFS  +   PIP++        DS SLVVVSFYKFAD
Sbjct: 63  LPFNSPLSGFCASSHPQRMTLSMCFSATTAADPIPTSDPHPPHSPDSQSLVVVSFYKFAD 122

Query: 133 FPDHAEFRSPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQ 192
           FPDHA+ R PLK+LC++L VSGGIILAPEGINGSICG+RESV RVL FI++D+RLK LRQ
Sbjct: 123 FPDHADLRKPLKQLCQDLYVSGGIILAPEGINGSICGTRESVERVLMFIQTDDRLKGLRQ 182

Query: 193 VETPVSPEEEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWF 252
           +E+PVSPE+EAIHHGH+SSSPLAAGEDAPFRWDHVRVKLKKE    E             
Sbjct: 183 IESPVSPEQEAIHHGHSSSSPLAAGEDAPFRWDHVRVKLKKEVFCFEA------------ 242

Query: 253 SYLLIYIHLLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYE 312
           S+L + I        C +        SP+E+VG+YV P DWNALISDPDTVVIDVRN+YE
Sbjct: 243 SHLFVTI--------CDV--------SPIEKVGKYVSPGDWNALISDPDTVVIDVRNNYE 302

Query: 313 TRIGKFKTAVDPCTTAFRDFPAWVEDSFQLPKSDCKY-------SNQGVEEETVNPEENS 372
           TRIG FK AVDPCTTAFRDFP+WVE+ FQ   ++ ++       SN+ + E+    +   
Sbjct: 303 TRIGMFKGAVDPCTTAFRDFPSWVEEQFQPDAANVEHAEMEKEGSNESINEDAEISKPKM 362

Query: 373 PPRVAMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKR 432
           P RVAMYCTGGIRCEKA+S++LSKGF+EVYHL+GGILKYLEE+PK+ESLWEGECFVFDKR
Sbjct: 363 PKRVAMYCTGGIRCEKATSFMLSKGFEEVYHLKGGILKYLEEIPKTESLWEGECFVFDKR 422

Query: 433 VSVEHGLEQGTFKLCYGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQF 492
           V+VEHGL QG FKLCYGCKQPVSDADME+PEWEYGVSCP+CYSTKSEEEKERARARQRQF
Sbjct: 423 VAVEHGLIQGNFKLCYGCKQPVSDADMEAPEWEYGVSCPYCYSTKSEEEKERARARQRQF 466

Query: 493 ETWGIIGGPDKGRRPTQSDNNI 503
           E WGIIGGPDKGRRP    ++I
Sbjct: 483 EAWGIIGGPDKGRRPAAKADSI 466

[Close]

BLAST of Lsi04G010090 vs. NCBI nr
Match: gi|1009121678|ref|XP_015877589.1| (PREDICTED: rhodanese-like domain-containing protein 7 [Ziziphus jujuba])

HSP 1 Score: 578.2 bits (1489), Expect = 1.4e-161
Identity = 315/501 (62.87%), Postives = 360/501 (71.86%), Query Frame = 1


Query: 19  MLRYRASPLLALGMVSPLPSSS---SSSSSSSSSSFSSNPNL-ITFNPSFPILKPS---- 78
           M+R    PLL L M+S   S S   SSSSSSSS+  + NP   ++   + P  KPS    
Sbjct: 1   MIRCATPPLLPLRMLSSPSSPSLCFSSSSSSSSNCLNPNPRFNLSLKTTLPFPKPSRASS 60

Query: 79  -LSLPS-----HLSSFLQKPTRSMTHSRCFSGPSPTVPIPS---ACEEEEMDSVSLVVVS 138
             +LP      H  +F Q    SM  S C   P+ T+P  +     E +  DS +LVVVS
Sbjct: 61  LFALPFKIFLLHSLNFQQ----SMPLSSCLCRPTNTIPFSTKNPGPESDVSDSKALVVVS 120

Query: 139 FYKFADFPDHAEFRSPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDER 198
           FYKFADF DHA  R PLKKLCEELRVSGGIILAPEGINGSICG+ ESV RVLGFI+SD R
Sbjct: 121 FYKFADFSDHASMRRPLKKLCEELRVSGGIILAPEGINGSICGTPESVERVLGFIQSDNR 180

Query: 199 LKELRQVETPVSPEEEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEY 258
           LK LRQ+E+PVSPEEEAIHHGHT+SSPLAAGED            + + +R++ + +   
Sbjct: 181 LKGLRQIESPVSPEEEAIHHGHTNSSPLAAGED---------APFRWDHVRVKLKKE--- 240

Query: 259 KSTAWFSYLLIYIHLLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVID 318
                                  IVTLGMP +SP ERVG+YV PR+WNALISDPDTVVID
Sbjct: 241 -----------------------IVTLGMPTVSPTERVGKYVSPREWNALISDPDTVVID 300

Query: 319 VRNHYETRIGKFKTAVDPCTTAFRDFPAWVEDSFQLPKSDCKYS-------NQGVEEETV 378
           VRN+YETRIGKFK AVDPCTTAFR+FP+WVED FQL + D + S       N+    +T 
Sbjct: 301 VRNNYETRIGKFKGAVDPCTTAFREFPSWVEDQFQLSEGDTENSEVDPNSSNERTINQTE 360

Query: 379 NPEENSPPRVAMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGEC 438
            P +  P RVAMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKY+E+VP+ ESLWEGEC
Sbjct: 361 TPNDKMPQRVAMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKYIEDVPEKESLWEGEC 420

Query: 439 FVFDKRVSVEHGLEQGTFKLCYGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERAR 496
           FVFDKRVSV+HGL QGT+KLCYGCKQPVS+ADMESPEWEYGVSCP+CYS+KS EEKERAR
Sbjct: 421 FVFDKRVSVDHGLVQGTYKLCYGCKQPVSEADMESPEWEYGVSCPYCYSSKSVEEKERAR 462

[Close]

BLAST of Lsi04G010090 vs. NCBI nr
Match: gi|590570547|ref|XP_007011369.1| (Rhodanese/Cell cycle control phosphatase superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 574.7 bits (1480), Expect = 1.6e-160
Identity = 307/498 (61.65%), Postives = 364/498 (73.09%), Query Frame = 1


Query: 19  MLRYRASPLLALGMVSPLPSSSSSSSSSSSSSFSSNPNLITFNPSFPILKPSLSLPSHLS 78
           MLR R    LAL M+S             SSS +SNPN I   P        L L + LS
Sbjct: 1   MLRCRPPLSLALRMLS-------------SSSHTSNPNPIFHLPCTSRPTSGLPLKARLS 60

Query: 79  SFLQKPTRSMTHSRCFSGPSPT-VPI-----PSACEE-EEMDSVSLVVVSFYKFADFPDH 138
           +      R MT S+CF+G +   +P+     P  C+  EE DS SLVVVSFY+FADFPDH
Sbjct: 61  NSCSSDRR-MTLSKCFTGAAADPIPVSSSGKPHCCQNPEEPDSDSLVVVSFYRFADFPDH 120

Query: 139 AEFRSPLKKLCEELRVSGGIILAPEGINGSICGSRESVRRVLGFIESDERLKELRQVETP 198
           A+ R PLKKLCE+LRVSGGIILAPEGINGSICG+RESV RVLGFI++D+RLK LRQ+E+P
Sbjct: 121 ADLRKPLKKLCEDLRVSGGIILAPEGINGSICGTRESVERVLGFIQTDDRLKGLRQIESP 180

Query: 199 VSPEEEAIHHGHTSSSPLAAGEDAPFRWDHVRVKLKKEDMRIETEVDVEYKSTAWFSYLL 258
           VSPE+EAIHHGH++SSPLAAGED            + + +R++ + +             
Sbjct: 181 VSPEQEAIHHGHSTSSPLAAGED---------APFRWDHVRVKLKKE------------- 240

Query: 259 IYIHLLMLSSQCYIVTLGMPVISPVERVGQYVKPRDWNALISDPDTVVIDVRNHYETRIG 318
                        IVTLGMP +SP+E+VG+YV P+DWNALISDPDTVVIDVRN+YETRIG
Sbjct: 241 -------------IVTLGMPEVSPIEKVGKYVSPKDWNALISDPDTVVIDVRNNYETRIG 300

Query: 319 KFKTAVDPCTTAFRDFPAWVEDSFQLPKSDCKYSNQGVE--EETVN-----PEENSPPRV 378
            FK AVDPCTTAFR+FP WVED F+L  S+ +++N   +  +E++N     P++  P RV
Sbjct: 301 MFKGAVDPCTTAFREFPPWVEDQFRLDGSELEHANMEKKGLDESINKDAEIPKQKMPKRV 360

Query: 379 AMYCTGGIRCEKASSYLLSKGFKEVYHLEGGILKYLEEVPKSESLWEGECFVFDKRVSVE 438
           AMYCTGGIRCEKASS+LL+KGF+EVYHL+GGILKYLEEVPK+ESLWEGECFVFDKRVSVE
Sbjct: 361 AMYCTGGIRCEKASSFLLNKGFEEVYHLKGGILKYLEEVPKTESLWEGECFVFDKRVSVE 420

Query: 439 HGLEQGTFKLCYGCKQPVSDADMESPEWEYGVSCPHCYSTKSEEEKERARARQRQFETWG 498
           HGL QG FKLCYGCKQPVSDADME+PEWEYGVSCPHC+ +KSEEEKERARARQRQFETWG
Sbjct: 421 HGLVQGNFKLCYGCKQPVSDADMEAPEWEYGVSCPHCFLSKSEEEKERARARQRQFETWG 449

Query: 499 IIGGPDKGRRPTQSDNNI 503
           IIGG DKGRRP    ++I
Sbjct: 481 IIGGLDKGRRPASKPDSI 449

The following BLAST results are available for this feature:

BLAST of Lsi04G010090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
STR7_ARATH	1.0e-143	59.38	Rhodanese-like domain-containing protein 7 OS=Arabidopsis thaliana GN=STR7 PE=2 ...	[more]
Y4491_AGRFC	2.1e-67	56.22	UPF0176 protein Atu4491 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=Atu...	[more]
Y2319_METFK	3.5e-67	51.18	UPF0176 protein Mfla_2319 OS=Methylobacillus flagellatus (strain KT / ATCC 51484...	[more]
Y2887_RHIME	6.0e-67	55.81	UPF0176 protein R02887 OS=Rhizobium meliloti (strain 1021) GN=R02887 PE=3 SV=1	[more]
Y3638_RHIEC	1.3e-66	56.28	UPF0176 protein RHE_CH03638 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=RH...	[more]

BLAST of Lsi04G010090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM63_CUCSA	1.7e-214	79.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223080 PE=3 SV=1	[more]
A0A0D2UVX8_GOSRA	1.3e-164	64.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G206700 PE=3 SV=1	[more]
A0A061FZI0_THECC	1.1e-160	61.65	Rhodanese/Cell cycle control phosphatase superfamily protein isoform 1 OS=Theobr...	[more]
V4VAD7_9ROSI	3.2e-160	62.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031468mg PE=3 SV=1	[more]
B9S4H2_RICCO	7.1e-160	61.34	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0690200 PE=3 SV=1	[more]

BLAST of Lsi04G010090 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40760.1	5.8e-145	59.38	Rhodanese/Cell cycle control phosphatase superfamily protein	[more]
AT1G09280.1	1.2e-20	38.06	Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR0...	[more]
AT1G17850.2	1.0e-16	27.52	Rhodanese/Cell cycle control phosphatase superfamily protein	[more]

BLAST of Lsi04G010090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701590\|ref\|XP_004146431.2\|	2.5e-214	79.63	PREDICTED: rhodanese-like domain-containing protein 7 [Cucumis sativus]	[more]
gi\|659114244\|ref\|XP_008456970.1\|	7.2e-206	77.66	PREDICTED: LOW QUALITY PROTEIN: rhodanese-like domain-containing protein 7 [Cucu...	[more]
gi\|763806031\|gb\|KJB72969.1\|	1.8e-164	64.14	hypothetical protein B456_011G206700 [Gossypium raimondii]	[more]
gi\|1009121678\|ref\|XP_015877589.1\|	1.4e-161	62.87	PREDICTED: rhodanese-like domain-containing protein 7 [Ziziphus jujuba]	[more]
gi\|590570547\|ref\|XP_007011369.1\|	1.6e-160	61.65	Rhodanese/Cell cycle control phosphatase superfamily protein isoform 1 [Theobrom...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020936	UPF0176
IPR001763	Rhodanese-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G010090.1	Lsi04G010090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001763	Rhodanese-like domain	GENE3D	G3DSA:3.40.250.10		coord: 273..417 score: 1.6
IPR001763	Rhodanese-like domain	PFAM	PF00581	Rhodanese	coord: 290..401 score: 6.
IPR001763	Rhodanese-like domain	SMART	SM00450	rhod_4	coord: 283..405 score: 1.7
IPR001763	Rhodanese-like domain	PROFILE	PS50206	RHODANESE_3	coord: 293..408 score: 16
IPR001763	Rhodanese-like domain	unknown	SSF52821	Rhodanese/Cell cycle control phosphatase	coord: 261..434 score: 2.06
IPR020936	Uncharacterised protein family UPF0176	HAMAP	MF_00469	UPF0176	coord: 115..445 score: 3
None	No IPR available	PANTHER	PTHR22778	OVARIAN CANCER GENE-2 PROTEIN-RELATED	coord: 90..185 score: 7.4E-211coord: 359..496 score: 7.4E-211coord: 265..337 score: 7.4E-211coord: 211..229 score: 7.4E
None	No IPR available	PANTHER	PTHR22778:SF12	RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 7	coord: 265..337 score: 7.4E-211coord: 90..185 score: 7.4E-211coord: 359..496 score: 7.4E-211coord: 211..229 score: 7.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G010090	Csa5G223080	Cucumber (Chinese Long) v2	culsiB369
Lsi04G010090	CSPI05G11670	Wild cucumber (PI 183967)	cpilsiB373
Lsi04G010090	Cucsa.143820	Cucumber (Gy14) v1	cgylsiB232
Lsi04G010090	CmaCh04G010580	Cucurbita maxima (Rimu)	cmalsiB672
Lsi04G010090	CmoCh04G011240	Cucurbita moschata (Rifu)	cmolsiB662
Lsi04G010090	Cla007309	Watermelon (97103) v1	lsiwmB306
Lsi04G010090	MELO3C020168	Melon (DHL92) v3.5.1	lsimeB282
Lsi04G010090	ClCG07G005250	Watermelon (Charleston Gray)	lsiwcgB297
Lsi04G010090	MELO3C034382.2	Melon (DHL92) v3.6.1	lsimedB300
Lsi04G010090	Cla97C07G133610	Watermelon (97103) v2	lsiwmbB298
Lsi04G010090	Bhi07G000403	Wax gourd	lsiwgoB381
Lsi04G010090	Cp4.1LG01g07110	Cucurbita pepo (Zucchini)	cpelsiB354
Lsi04G010090	Carg00160	Silver-seed gourd	carlsiB605
Lsi04G010090	CsaV3_5G011090	Cucumber (Chinese Long) v3	cuclsiB394

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G010090	Cucumber (Gy14) v2	cgyblsiB338
Lsi04G010090	Silver-seed gourd	carlsiB242
Lsi04G010090	Silver-seed gourd	carlsiB828
Lsi04G010090	Watermelon (97103) v2	lsiwmbB270
Lsi04G010090	Bottle gourd (USVL1VR-Ls)	lsilsiB128
Lsi04G010090	Cucurbita maxima (Rimu)	cmalsiB671
Lsi04G010090	Cucurbita moschata (Rifu)	cmolsiB663
Lsi04G010090	Cucurbita pepo (Zucchini)	cpelsiB149
Lsi04G010090	Cucurbita pepo (Zucchini)	cpelsiB355