Lsi04G010030 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi04G010030
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionZinc knuckle family protein
Locationchr04 : 11206345 .. 11207346 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTAACACAGAACAAACTGGACATGGTCAATCAATTGGTGTACACCTTAATGAAGCATTTTGTAGGACGTACAACCGTATATTCCAATCAAGCCACAGAGGCTCTCTTGAAAATGAGATGTCGAAAGATGAACGACTTCAAGTGGTATAAAGACGTCTTTATGGCTTGTGTTTATAATCTCACTTCCTGTAGAGATGAAATCTGGAAGCGAAAGTTCATGGAAGGATTACCCCCTTACATTGCAGAGAAGTTTTATCAAAGAAGGTCCGAAAGTTTTGAAGAAGGACAGATCAATTGGAATGCCCTCGCCTACGGGGACATTACCAACAATATCCAGGCATTATGCTTAAGTCTTTGTAAAGACAACAAGCATAATCAAAGAATTATCAAAGATGCAGATTACTAGAAGGAACTAGTAACATTCTATAAGAAATATGGCGTTGAGCAAGGATTACCGCCATCAAAGAAAAAGAAAAAATCATCCAAAAGGCTTTTTAGCAGAAGCAAAAACAAGCAACAGAATGATGAAAAGCACCGAAAGAGGAAATATTATAACATAAGTAAGAAGTATTCTAAGAAAAAGGAAACTACTTGCTTCCGATGTAATAAACAGGGACATTATGCCAACAGATGCCCTTTGATGAAGAAGGTCAATAATCTAGAAATCGACAAAGACCTAAAACAACCTCTTCTCTTTGCTATTCGTGACAAAGAAGAAGATATGTCCATCTCGGGAGACTCTTCCACCGAAGAAGGATTTATCAATGAAGTAGTAGAAGATTCCTCCTCTGAAGCAGAATCTTTCGACTCCTCCCAATATTCAGACGATGCAATACCATGCACCGGTTGTATAAATGTTCTAACAAGAGATCAGGAACATATGCTTGATCTTATAGAAGAACTTCCAGACGAAGCCTCCCGAAGAACAGCCCTTCTTAAGCTTTGCAACTCTCTCGAAGAACAAAAGTCGAAAGCTCAAGAATTCGAGCCAATATAA

mRNA sequence

ATGGAGAACAAACTGGACATGGTCAATCAATTGGTGTACACCTTAATGAAGCATTTTGTAGGACGTACAACCGTATATTCCAATCAAGCCACAGAGGCTCTCTTGAAAATGAGATGTCGAAAGATGAACGACTTCAAGTGGTATAAAGACGTCTTTATGGCTTGTGTTTATAATCTCACTTCCTGTAGAGATGAAATCTGGAAGCGAAAGTTCATGGAAGGATTACCCCCTTACATTGCAGAGAAGTTTTATCAAAGAAGGTCCGAAAGTTTTGAAGAAGGACAGATCAATTGGAATGCCCTCGCCTACGGGGACATTACCAACAATATCCAGGCATTATGCTTAAAAGATTCCTCCTCTGAAGCAGAATCTTTCGACTCCTCCCAATATTCAGACGATGCAATACCATGCACCGGTTGTATAAATGTTCTAACAAGAGATCAGGAACATATGCTTGATCTTATAGAAGAACTTCCAGACGAAGCCTCCCGAAGAACAGCCCTTCTTAAGCTTTGCAACTCTCTCGAAGAACAAAAGTCGAAAGCTCAAGAATTCGAGCCAATATAA

Coding sequence (CDS)

ATGGAGAACAAACTGGACATGGTCAATCAATTGGTGTACACCTTAATGAAGCATTTTGTAGGACGTACAACCGTATATTCCAATCAAGCCACAGAGGCTCTCTTGAAAATGAGATGTCGAAAGATGAACGACTTCAAGTGGTATAAAGACGTCTTTATGGCTTGTGTTTATAATCTCACTTCCTGTAGAGATGAAATCTGGAAGCGAAAGTTCATGGAAGGATTACCCCCTTACATTGCAGAGAAGTTTTATCAAAGAAGGTCCGAAAGTTTTGAAGAAGGACAGATCAATTGGAATGCCCTCGCCTACGGGGACATTACCAACAATATCCAGGCATTATGCTTAAAAGATTCCTCCTCTGAAGCAGAATCTTTCGACTCCTCCCAATATTCAGACGATGCAATACCATGCACCGGTTGTATAAATGTTCTAACAAGAGATCAGGAACATATGCTTGATCTTATAGAAGAACTTCCAGACGAAGCCTCCCGAAGAACAGCCCTTCTTAAGCTTTGCAACTCTCTCGAAGAACAAAAGTCGAAAGCTCAAGAATTCGAGCCAATATAA

Protein sequence

MENKLDMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDEIWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALCLKDSSSEAESFDSSQYSDDAIPCTGCINVLTRDQEHMLDLIEELPDEASRRTALLKLCNSLEEQKSKAQEFEPI
BLAST of Lsi04G010030 vs. TrEMBL
Match: A0A0D2STQ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G078200 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 64/196 (32.65%), Postives = 107/196 (54.59%), Query Frame = 1

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           D V  L++++ KHF+G  +   ++ +E L  ++C+K+ DFKWYKDVFM  V   +  +  
Sbjct: 331 DAVATLIFSISKHFIGDPSHLKDRNSEVLSNLKCKKLTDFKWYKDVFMTRVMQRSDNQQP 390

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQ----ALC-----LK 125
            WK KF+ GLP  + EK   +  E++ +G I +  L YG++ +  Q     +C      K
Sbjct: 391 FWKEKFLAGLPTLLGEKVRSQIRENY-KGIIPYEKLTYGELISFTQKEGLKICQDLKLQK 450

Query: 126 DSSSEAESFD--------SSQYSDDAIPCTGCINVLTRDQEHMLDLIEELPDEASRRTAL 185
               E   ++        +SQ S D    +  IN+LT+DQE M+++I+++ D   +R  L
Sbjct: 451 QLKKERYQYELQIDELHTTSQSSRDENEPS--INMLTKDQEFMIEVIDKIQDLELKREYL 510

BLAST of Lsi04G010030 vs. TrEMBL
Match: A0A0D2SQP0_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_010G104800 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.0e-18
Identity = 61/207 (29.47%), Postives = 108/207 (52.17%), Query Frame = 1

Query: 7   MVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDEI 66
           ++  L++++ KHF+G  +   ++ +E L  ++C+K+ DFKWYKDVFM  V   +  +   
Sbjct: 151 LIATLIFSIFKHFIGDPSHLKDRNSELLSNLKCKKLTDFKWYKDVFMTRVMQRSDNQQPF 210

Query: 67  WKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYG-------------------DIT 126
           WK KF+ GLP  + EK   +  E++ +G I +  L YG                   +I 
Sbjct: 211 WKEKFLAGLPTLLGEKVRNQIRENY-KGIIPYEKLTYGQMSKYCKIKRKINNLNLDEEIE 270

Query: 127 NNIQALCLKDSSSEAE-SFDSSQYSDDAIPCTG---------CINVLTRDQEHMLDLIEE 185
             +  + L+ +SSE + S +  +   D +  T           IN+L++DQE M+++I++
Sbjct: 271 QKLNEILLETTSSENDTSTEIDELQIDELHTTSQSSSDENEPSINMLSKDQEFMIEVIDK 330

BLAST of Lsi04G010030 vs. TrEMBL
Match: A5ARQ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037318 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-17
Identity = 54/164 (32.93%), Postives = 90/164 (54.88%), Query Frame = 1

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           D V  L+Y++ KHF+G      ++  + L  ++C K++DF+WYK+VF+  V   + C   
Sbjct: 428 DAVATLIYSISKHFIGDPXKIKDKTADLLTNLKCPKLHDFRWYKEVFLTKVMLRSXCNQS 487

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALCLKDSSSEAESF 125
            WK KF+ GLP   +E+   +  E +  GQI ++ L Y D  ++I  L   DSS E    
Sbjct: 488 FWKEKFISGLPKLFSERIRIKIREQY-NGQIXYDKLTY-DNEDDINQL---DSSGEVSXQ 547

Query: 126 DSSQYSDDAIPCTGC----INVLTRDQEHMLDLIEELPDEASRR 166
            SS  ++       C    INV+++DQE +LD + ++ DE +++
Sbjct: 548 SSSDQAECIKGNCNCRPKTINVISQDQEFILDTLRKVEDEKTKQ 586

BLAST of Lsi04G010030 vs. TrEMBL
Match: A5ARA1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014931 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.3e-17
Identity = 53/168 (31.55%), Postives = 89/168 (52.98%), Query Frame = 1

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           D V  L+Y++ KHF+G      ++  + L  ++C K++DF+WYK VF+  V   + C   
Sbjct: 557 DAVATLIYSISKHFIGDPAKIKDKTADLLTNLKCPKLHDFRWYKKVFLTKVMLRSDCNQS 616

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGD----ITNNIQALCLKDSSSE 125
            WK KF+ GLP   +E+   +  E +  GQI ++ L Y       ++N   +   DSS E
Sbjct: 617 FWKEKFISGLPKLFSERIRIKIREQY-NGQIPYDKLTYDSESRTDSDNEDDINQLDSSGE 676

Query: 126 AESFDSSQYSDDAIPCTGC----INVLTRDQEHMLDLIEELPDEASRR 166
             S  SS  ++       C    INV+++DQE +LD + ++ DE +++
Sbjct: 677 VSSQSSSDQAECIKGNCNCRPKTINVISQDQEFILDTLRKVEDEKTKQ 723

BLAST of Lsi04G010030 vs. TrEMBL
Match: A0A022PPM0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021562mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1

Query: 3   NKLDMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSC 62
           N  D VN L+YT+ KHF+G T++   +  E L+ +RC  ++ FKWYKDVF + V+     
Sbjct: 563 NTNDSVNTLLYTIAKHFIGTTSLLLEKTQEQLMNLRCHNLSQFKWYKDVFFSKVFTRADS 622

Query: 63  RDEIWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNI 111
           + + WK KF+ GLP + AEK  + R +    G I ++   YGD+ + I
Sbjct: 623 QQDFWKEKFLSGLPHFFAEKI-RNRIKKKHNGVIPYSLYTYGDLASEI 669

BLAST of Lsi04G010030 vs. NCBI nr
Match: gi|659128065|ref|XP_008464028.1| (PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 58/110 (52.73%), Postives = 80/110 (72.73%), Query Frame = 1

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           DMVNQL+YT+ KHF+G   ++ N ATEALL ++C KM+ +KWYKD FMA +Y LT+C   
Sbjct: 150 DMVNQLLYTMTKHFIGSIQIHLNLATEALLGLKCHKMSRYKWYKDTFMARLYTLTTCGAN 209

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALCL 116
           IWK KF+EGLP YI++KFYQ  + +    QI+W  L Y DI++ +Q +C+
Sbjct: 210 IWKHKFVEGLPHYISQKFYQIMTANSVIQQIDWANLTYRDISSTVQMICV 259

BLAST of Lsi04G010030 vs. NCBI nr
Match: gi|763767465|gb|KJB34680.1| (hypothetical protein B456_006G078200 [Gossypium raimondii])

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 64/196 (32.65%), Postives = 107/196 (54.59%), Query Frame = 1

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           D V  L++++ KHF+G  +   ++ +E L  ++C+K+ DFKWYKDVFM  V   +  +  
Sbjct: 331 DAVATLIFSISKHFIGDPSHLKDRNSEVLSNLKCKKLTDFKWYKDVFMTRVMQRSDNQQP 390

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQ----ALC-----LK 125
            WK KF+ GLP  + EK   +  E++ +G I +  L YG++ +  Q     +C      K
Sbjct: 391 FWKEKFLAGLPTLLGEKVRSQIRENY-KGIIPYEKLTYGELISFTQKEGLKICQDLKLQK 450

Query: 126 DSSSEAESFD--------SSQYSDDAIPCTGCINVLTRDQEHMLDLIEELPDEASRRTAL 185
               E   ++        +SQ S D    +  IN+LT+DQE M+++I+++ D   +R  L
Sbjct: 451 QLKKERYQYELQIDELHTTSQSSRDENEPS--INMLTKDQEFMIEVIDKIQDLELKREYL 510

BLAST of Lsi04G010030 vs. NCBI nr
Match: gi|763798693|gb|KJB65648.1| (hypothetical protein B456_010G104800, partial [Gossypium raimondii])

HSP 1 Score: 99.4 bits (246), Expect = 7.2e-18
Identity = 61/207 (29.47%), Postives = 108/207 (52.17%), Query Frame = 1

Query: 7   MVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDEI 66
           ++  L++++ KHF+G  +   ++ +E L  ++C+K+ DFKWYKDVFM  V   +  +   
Sbjct: 151 LIATLIFSIFKHFIGDPSHLKDRNSELLSNLKCKKLTDFKWYKDVFMTRVMQRSDNQQPF 210

Query: 67  WKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYG-------------------DIT 126
           WK KF+ GLP  + EK   +  E++ +G I +  L YG                   +I 
Sbjct: 211 WKEKFLAGLPTLLGEKVRNQIRENY-KGIIPYEKLTYGQMSKYCKIKRKINNLNLDEEIE 270

Query: 127 NNIQALCLKDSSSEAE-SFDSSQYSDDAIPCTG---------CINVLTRDQEHMLDLIEE 185
             +  + L+ +SSE + S +  +   D +  T           IN+L++DQE M+++I++
Sbjct: 271 QKLNEILLETTSSENDTSTEIDELQIDELHTTSQSSSDENEPSINMLSKDQEFMIEVIDK 330

BLAST of Lsi04G010030 vs. NCBI nr
Match: gi|147787098|emb|CAN62741.1| (hypothetical protein VITISV_037318 [Vitis vinifera])

HSP 1 Score: 96.3 bits (238), Expect = 6.1e-17
Identity = 54/164 (32.93%), Postives = 90/164 (54.88%), Query Frame = 1

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           D V  L+Y++ KHF+G      ++  + L  ++C K++DF+WYK+VF+  V   + C   
Sbjct: 428 DAVATLIYSISKHFIGDPXKIKDKTADLLTNLKCPKLHDFRWYKEVFLTKVMLRSXCNQS 487

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGDITNNIQALCLKDSSSEAESF 125
            WK KF+ GLP   +E+   +  E +  GQI ++ L Y D  ++I  L   DSS E    
Sbjct: 488 FWKEKFISGLPKLFSERIRIKIREQY-NGQIXYDKLTY-DNEDDINQL---DSSGEVSXQ 547

Query: 126 DSSQYSDDAIPCTGC----INVLTRDQEHMLDLIEELPDEASRR 166
            SS  ++       C    INV+++DQE +LD + ++ DE +++
Sbjct: 548 SSSDQAECIKGNCNCRPKTINVISQDQEFILDTLRKVEDEKTKQ 586

BLAST of Lsi04G010030 vs. NCBI nr
Match: gi|147778853|emb|CAN60505.1| (hypothetical protein VITISV_014931 [Vitis vinifera])

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-16
Identity = 53/168 (31.55%), Postives = 89/168 (52.98%), Query Frame = 1

Query: 6   DMVNQLVYTLMKHFVGRTTVYSNQATEALLKMRCRKMNDFKWYKDVFMACVYNLTSCRDE 65
           D V  L+Y++ KHF+G      ++  + L  ++C K++DF+WYK VF+  V   + C   
Sbjct: 557 DAVATLIYSISKHFIGDPAKIKDKTADLLTNLKCPKLHDFRWYKKVFLTKVMLRSDCNQS 616

Query: 66  IWKRKFMEGLPPYIAEKFYQRRSESFEEGQINWNALAYGD----ITNNIQALCLKDSSSE 125
            WK KF+ GLP   +E+   +  E +  GQI ++ L Y       ++N   +   DSS E
Sbjct: 617 FWKEKFISGLPKLFSERIRIKIREQY-NGQIPYDKLTYDSESRTDSDNEDDINQLDSSGE 676

Query: 126 AESFDSSQYSDDAIPCTGC----INVLTRDQEHMLDLIEELPDEASRR 166
             S  SS  ++       C    INV+++DQE +LD + ++ DE +++
Sbjct: 677 VSSQSSSDQAECIKGNCNCRPKTINVISQDQEFILDTLRKVEDEKTKQ 723

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0D2STQ6_GOSRA1.3e-1832.65Uncharacterized protein OS=Gossypium raimondii GN=B456_006G078200 PE=4 SV=1[more]
A0A0D2SQP0_GOSRA5.0e-1829.47Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_010G104800 PE=... [more]
A5ARQ3_VITVI4.3e-1732.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037318 PE=4 SV=1[more]
A5ARA1_VITVI7.3e-1731.55Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014931 PE=4 SV=1[more]
A0A022PPM0_ERYGU1.2e-1638.89Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021562mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659128065|ref|XP_008464028.1|1.3e-2752.73PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo][more]
gi|763767465|gb|KJB34680.1|1.9e-1832.65hypothetical protein B456_006G078200 [Gossypium raimondii][more]
gi|763798693|gb|KJB65648.1|7.2e-1829.47hypothetical protein B456_010G104800, partial [Gossypium raimondii][more]
gi|147787098|emb|CAN62741.1|6.1e-1732.93hypothetical protein VITISV_037318 [Vitis vinifera][more]
gi|147778853|emb|CAN60505.1|1.0e-1631.55hypothetical protein VITISV_014931 [Vitis vinifera][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G010030.1Lsi04G010030.1mRNA