Lsi04G006850 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G006850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr04 : 6276120 .. 6276427 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAGTGATTCATTCGTAGAAAGATTGTTAACTCCCCAACACATGCTGTGGGTGTCTTGTAGGTGTACCACGGATCTTCATCCATGAAGAAAGTGAAGAAATATCTTTTCTTGAAACACAGTTCTCAAATCAAAATGATATGCACTTTCTGGAATACATAAGAACTTCAAGAATAAACATCAACATTAGGCAGGTTTTCTGATTGATTGGACCTGTTGTTATCTTTCAAGCTTCAAGATGGTCTTTGGATTGCTAGAAACTTTTGCCGGGATGATGGGGAAGGGAGCGGCTCTGTAAATTCATAG

mRNA sequence

ATGCCGAGTGTACCACGGATCTTCATCCATGAAGAAAGTGAAGAAATATCTTTTCTTGAAACACAGTTCTCAAATCAAAATGATATGCACTTTCTGGAATACATAAGAACTTCAAGAATAAACATCAACATTAGGCAGCTTCAAGATGGTCTTTGGATTGCTAGAAACTTTTGCCGGGATGATGGGGAAGGGAGCGGCTCTGTAAATTCATAG

Coding sequence (CDS)

ATGCCGAGTGTACCACGGATCTTCATCCATGAAGAAAGTGAAGAAATATCTTTTCTTGAAACACAGTTCTCAAATCAAAATGATATGCACTTTCTGGAATACATAAGAACTTCAAGAATAAACATCAACATTAGGCAGCTTCAAGATGGTCTTTGGATTGCTAGAAACTTTTGCCGGGATGATGGGGAAGGGAGCGGCTCTGTAAATTCATAG

Protein sequence

MPSVPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQLQDGLWIARNFCRDDGEGSGSVNS

Homology

[Close]

BLAST of Lsi04G006850 vs. Swiss-Prot
Match: ALKBH_ARATH (Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis thaliana GN=At1g11780 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 5.3e-06
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           +PRIF  EE+ +I  LE++ S+++   F EYI+TSRININIRQ+
Sbjct: 301 IPRIFTGEENADIGALESELSHESGHFFAEYIKTSRININIRQV 344

[Close]

BLAST of Lsi04G006850 vs. TrEMBL
Match: A0A0A0KS00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589370 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           VPRIFI EESEEISFLET  +NQ+D+H LEYIRTSRININIRQ+
Sbjct: 319 VPRIFIDEESEEISFLETHLTNQDDLHCLEYIRTSRININIRQV 362

[Close]

BLAST of Lsi04G006850 vs. TrEMBL
Match: A0A0B0N645_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_14429 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-06
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           VPRIF  EE+ EI+ LE +FS+++D  FL+YIRTSRININIRQ+
Sbjct: 376 VPRIFTDEENAEITPLELRFSDEDDRCFLDYIRTSRININIRQV 419

[Close]

BLAST of Lsi04G006850 vs. TrEMBL
Match: W9RC47_9ROSA (Alpha-ketoglutarate-dependent dioxygenase alkB OS=Morus notabilis GN=L484_001359 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-06
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           VPRIF  +E+ +IS LE QFS + D  FLEYI+TSRININIRQ+
Sbjct: 268 VPRIFTDKENADISHLELQFSQEEDCCFLEYIQTSRININIRQV 311

[Close]

BLAST of Lsi04G006850 vs. TrEMBL
Match: A0A0D2V6K8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G175900 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-06
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           VPRIF  EE+ EI+ LE +FS+++D  FL+YIRTSRININIRQ+
Sbjct: 316 VPRIFTDEENAEITPLELRFSDEDDRCFLDYIRTSRININIRQV 359

[Close]

BLAST of Lsi04G006850 vs. TAIR10
Match: AT1G11780.1 (AT1G11780.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein)

HSP 1 Score: 51.2 bits (121), Expect = 3.0e-07
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           +PRIF  EE+ +I  LE++ S+++   F EYI+TSRININIRQ+
Sbjct: 301 IPRIFTGEENADIGALESELSHESGHFFAEYIKTSRININIRQV 344

[Close]

BLAST of Lsi04G006850 vs. NCBI nr
Match: gi|659090466|ref|XP_008446031.1| (PREDICTED: LOW QUALITY PROTEIN: alpha-ketoglutarate-dependent dioxygenase alkB [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           VPRIFI EESEEISFLE   SNQ+D+HFLEYIRTSRININIRQ+
Sbjct: 319 VPRIFIDEESEEISFLERHLSNQDDLHFLEYIRTSRININIRQV 362

[Close]

BLAST of Lsi04G006850 vs. NCBI nr
Match: gi|449435087|ref|XP_004135327.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           VPRIFI EESEEISFLET  +NQ+D+H LEYIRTSRININIRQ+
Sbjct: 319 VPRIFIDEESEEISFLETHLTNQDDLHCLEYIRTSRININIRQV 362

[Close]

BLAST of Lsi04G006850 vs. NCBI nr
Match: gi|697157468|ref|XP_009587489.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB [Nicotiana tomentosiformis])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           VPRIF  +E  EIS LE QFS+++D  FLEYIRTSRININIRQ+
Sbjct: 313 VPRIFTDKEHAEISSLELQFSDEDDSAFLEYIRTSRININIRQV 356

[Close]

BLAST of Lsi04G006850 vs. NCBI nr
Match: gi|698420920|ref|XP_009767033.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           VPRIF  +E  +IS LE QFS+++D  FLEYIRTSRININIRQ+
Sbjct: 313 VPRIFTDKEHADISSLELQFSDEDDSAFLEYIRTSRININIRQV 356

[Close]

BLAST of Lsi04G006850 vs. NCBI nr
Match: gi|698420926|ref|XP_009767105.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1


Query: 4   VPRIFIHEESEEISFLETQFSNQNDMHFLEYIRTSRININIRQL 48
           VPRIF  +E  +IS LE QFS+++D  FLEYIRTSRININIRQ+
Sbjct: 291 VPRIFTDKEHADISSLELQFSDEDDSAFLEYIRTSRININIRQV 334

The following BLAST results are available for this feature:

BLAST of Lsi04G006850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALKBH_ARATH	5.3e-06	54.55	Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis thaliana GN=At1g11...	[more]

BLAST of Lsi04G006850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS00_CUCSA	1.1e-10	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589370 PE=4 SV=1	[more]
A0A0B0N645_GOSAR	4.8e-06	65.91	Uncharacterized protein OS=Gossypium arboreum GN=F383_14429 PE=4 SV=1	[more]
W9RC47_9ROSA	4.8e-06	65.91	Alpha-ketoglutarate-dependent dioxygenase alkB OS=Morus notabilis GN=L484_001359...	[more]
A0A0D2V6K8_GOSRA	4.8e-06	65.91	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G175900 PE=4 SV=1	[more]

BLAST of Lsi04G006850 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11780.1	3.0e-07	54.55	oxidoreductase, 2OG-Fe(II) oxygenase family protein	[more]

BLAST of Lsi04G006850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090466\|ref\|XP_008446031.1\|	4.2e-11	84.09	PREDICTED: LOW QUALITY PROTEIN: alpha-ketoglutarate-dependent dioxygenase alkB [...	[more]
gi\|449435087\|ref\|XP_004135327.1\|	1.6e-10	81.82	PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB [Cucumis sativus]	[more]
gi\|697157468\|ref\|XP_009587489.1\|	1.1e-06	70.45	PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB [Nicotiana tomentosifo...	[more]
gi\|698420920\|ref\|XP_009767033.1\|	2.4e-06	68.18	PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Nicotiana ...	[more]
gi\|698420926\|ref\|XP_009767105.1\|	2.4e-06	68.18	PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X2 [Nicotiana ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006281	DNA repair
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G006850.1	Lsi04G006850.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G006850	CmoCh18G006290	Cucurbita moschata (Rifu)	cmolsiB365
Lsi04G006850	CsaV3_5G030250	Cucumber (Chinese Long) v3	cuclsiB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G006850	Cucumber (Gy14) v1	cgylsiB076
Lsi04G006850	Cucurbita maxima (Rimu)	cmalsiB172
Lsi04G006850	Cucurbita maxima (Rimu)	cmalsiB383
Lsi04G006850	Cucurbita maxima (Rimu)	cmalsiB670
Lsi04G006850	Cucurbita moschata (Rifu)	cmolsiB160
Lsi04G006850	Cucurbita moschata (Rifu)	cmolsiB661
Lsi04G006850	Cucurbita pepo (Zucchini)	cpelsiB030
Lsi04G006850	Cucurbita pepo (Zucchini)	cpelsiB353
Lsi04G006850	Cucurbita pepo (Zucchini)	cpelsiB672
Lsi04G006850	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G006850	Cucumber (Chinese Long) v2	culsiB368
Lsi04G006850	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G006850	Watermelon (Charleston Gray)	lsiwcgB264
Lsi04G006850	Watermelon (97103) v1	lsiwmB339
Lsi04G006850	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G006850	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G006850	Silver-seed gourd	carlsiB629
Lsi04G006850	Watermelon (97103) v2	lsiwmbB271
Lsi04G006850	Wax gourd	lsiwgoB380