Lsi04G006780 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G006780
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ELMO domain-containing protein A
Location	chr04 : 6198322 .. 6200261 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGGCAGGGAAGAGACCCTTCAACTGATTTTAGGTTGTTATTTTGCTATATGAGTTGAGGGCTGCTTGTTTATCTCTTGTGTATTACCTTTTGGCAAGTTATCTCCTTTTCATTGCTCTGAAAAGCTTTTACCTAATCCAGAGGAGCTGGGTTTATCTCTTTGGAGAATTTGTTGTTCTTTGCAAAGACATTCTCAGTAAGATCCTAAACTTCATTTGACTCGTAAAATTCTTTAGGCCCCTAAGTGTAACATGTCATCATGCTTTCACTAATTCTACTTGTCCTTTTATCGTTTCAGACATCTTTCCAACTTCTGTTGAGAAAACAAGGAGGAAAGCCAGCTGCTTGGGAATATCCCTTTGCTGTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTTGATCTAGATGCTTGTGAGTAGCAAATCCATTTATGCGTCCTGGTCTACATACAAAGATACCATATAGGCTGCAATACTCCAGTATACTATTAGAGCTTCATTTTTTATGGTGACTTTTAAATTCTTGGAAAGAGAACTAATGCAGCTCACCTTTTCAAATGCAGCAAAACCAAGGACTTTTATCAGATCAGTTTTCCTGCAAATGTTGTCAGGTAGATCTCTAAACTAAGAAACGGACACTTTAGTTTAGCTAGCGTGTCCGTGTTCAGTATAGGACACTTGAACACTCACACTTGTTGGACACGTATTGGATACTTGTTAGTACAACAAATGTGTTAGACATGCATAGAACACTTGTTAAGTAGACTAAAAAGACACATATATGACGATAATAATAAATTTTAGTGTGAAATACATCAAACTATTTTCTTAAGCATATAAATGCATCAATTCATTTACTTTGAATTTTCTTTAAACCATCATGGGTTGACCTAGCGGTAAAAAAGGAGACATAGTCTCAATAAATGATTGAGAGGTCATGGATTCAATTCATGGCGACCGCCTACCTAGGAATTAATTTCCTATGAGTTTCCTTGACACCCAAATGTTGTAAGGTCAGGCGGGTTGTCCCGTGAGATTAGTCGAGGTGCGCATAAGCTAGCCTGGACACTCACGGATATAGAAAAAATATGTATATTTTAGTAAACGTGTCGGTATCTGTGTCGGTGTCTTAGATTCTTAAAAAATGATGTGTCACAAGGTTTGTGTTGTGTCTTATCTGTATCCTTGCTTCTTAGTCTCTAAACATAATCCTGCAACGTGTCAAGTTTGAAGTTGCTTATCAATACAAGAGATATAATTGCCCTTGGAATATATGGTATTTTCTGATAACAGAGAATGAGTGGGCATTTGACTTGCTTTACTGCGTCGCCTTCGTTGTAATGGACAAACAATGGCTGGAGAGAAATGCTACCTACATGGAGTTCAATGTAAGAATAAATTACAGACTCAGCTTATCCACTTCAAGAGTTAATTCTTTTAAAAATAGAAAAAAATTTGGGAAATTTTTAAAAATAAAAAAAATAAAGGAAACTATTTACACAAAATAACAAAATTTTTAGATAGACGCTGATAGAAGTCTATTAGGGTCTATCAGTGATAGAAATGATAGAAGTCTATCACTGATAGATGCTGATAGAACTCTATCCATGTCTATCAGTGTTTTTTTTGTTATTTTTTTTTATTTTCTATAAATAGTTTGACATTTTTCTATTTGTGAAAATTTTCCAAAAAATTTCACTCTGCGAATTCTAACTCGTATTTACTCTTCCATGTTCATGTGAGATCTACTCATTTAATAAATATAGCATGGAAAATCAATAAAAATGAATAATCGAATTATCCATTTGTGGTAGGATGTGTTGAAGTCCACCAGAGCTCAGTTGGAGAAAGAACTTCTAATGGAGGATGTACTACGGATTGAAGACATGCCTTCTTACAACCTTCTTTTAACATTAGATTACAGGTAG

mRNA sequence

ATGGGATGGCAGGGAAGAGACCCTTCAACTGATTTTAGAGGAGCTGGGTTTATCTCTTTGGAGAATTTGTTGTTCTTTGCAAAGACATTCTCAACATCTTTCCAACTTCTGTTGAGAAAACAAGGAGGAAAGCCAGCTGCTTGGGAATATCCCTTTGCTGTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTTGATCTAGATGCTTGTCAGGCGGAGAATGAGTGGGCATTTGACTTGCTTTACTGCGTCGCCTTCGTTGTAATGGACAAACAATGGCTGGAGAGAAATGCTACCTACATGGAGTTCAATGATGTGTTGAAGTCCACCAGAGCTCAGTTGGAGAAAGAACTTCTAATGGAGGATGTACTACGGATTGAAGACATGCCTTCTTACAACCTTCTTTTAACATTAGATTACAGGTAG

Coding sequence (CDS)

ATGGGATGGCAGGGAAGAGACCCTTCAACTGATTTTAGAGGAGCTGGGTTTATCTCTTTGGAGAATTTGTTGTTCTTTGCAAAGACATTCTCAACATCTTTCCAACTTCTGTTGAGAAAACAAGGAGGAAAGCCAGCTGCTTGGGAATATCCCTTTGCTGTTGCTGGTGTAAATATCACATTTATGATCATGCAAATGCTTGATCTAGATGCTTGTCAGGCGGAGAATGAGTGGGCATTTGACTTGCTTTACTGCGTCGCCTTCGTTGTAATGGACAAACAATGGCTGGAGAGAAATGCTACCTACATGGAGTTCAATGATGTGTTGAAGTCCACCAGAGCTCAGTTGGAGAAAGAACTTCTAATGGAGGATGTACTACGGATTGAAGACATGCCTTCTTACAACCTTCTTTTAACATTAGATTACAGGTAG

Protein sequence

MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNITFMIMQMLDLDACQAENEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDYR

Homology

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BLAST of Lsi04G006780 vs. Swiss-Prot
Match: ELMOB_DICDI (ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-12
Identity = 39/134 (29.10%), Postives = 71/134 (52.99%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           +G+QG DP+TDFRG G + L+NL++F+   S   + +L+    K     YPFA+ G+NIT
Sbjct: 153 LGFQGMDPATDFRGMGILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINIT 212

Query: 61  FMIMQMLDLDACQ------AENEWAFDLLYCVAFVVMDKQWLERN-ATYMEFNDVLKSTR 120
            +++ ++D    +            F+ LY + F+  D+ +  +   + MEFN + K   
Sbjct: 213 ALVLNLIDKPHFKIYFFKNGSTLTQFNELYSLVFISFDRFYQSKKPKSIMEFNTIKKEFE 272

Query: 121 AQLEKELLMEDVLR 128
            ++ +   +  +LR
Sbjct: 273 TKISQNSDLVQLLR 283

[Close]

BLAST of Lsi04G006780 vs. Swiss-Prot
Match: ELMOC_DICDI (ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-12
Identity = 42/139 (30.22%), Postives = 68/139 (48.92%), Query Frame = 1


Query: 2   GWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNITF 61
           G+Q  DP+ DFRG G + L NL+   +  +   Q +L +        +YPFAVAG+NI+ 
Sbjct: 411 GFQSDDPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQDR------DYPFAVAGINISN 470

Query: 62  MIMQMLDLDACQAENEW----------------------AFDLLYCVAFVVMDKQWLERN 119
           +I ++  +     +  W                      AF+ LY + F ++D  W++ N
Sbjct: 471 LIFEVFQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMN 530

[Close]

BLAST of Lsi04G006780 vs. Swiss-Prot
Match: ELMD2_MOUSE (ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-09
Identity = 40/133 (30.08%), Postives = 64/133 (48.12%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTF-STSFQLLLRKQGGKPAAWEYPFAVAGVNI 60
           +G+QG DP TDFRG G + L NL++F++ + S + Q+L R    K     Y +A+ G+N+
Sbjct: 155 IGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLG---YSYAIVGINL 214

Query: 61  TFMIMQMLDLDACQ---------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLK 120
           T M   +L  +A +               F   YC      DK WLE     + + ++ +
Sbjct: 215 TEMAYSLLKSEALKLHLYNFVPGVPTMEHFHQFYCYLVYEFDKFWLEEEPESIMYFNLYR 274

Query: 121 STRAQLEKELLME 124
               +  K LLM+
Sbjct: 275 EKFHERIKGLLMD 284

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BLAST of Lsi04G006780 vs. Swiss-Prot
Match: ELMD1_PONAB (ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 46/150 (30.67%), Postives = 68/150 (45.33%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLL------RKQGGKPAAWE----- 60
           +G+QG DP TDFRG G + L NL +FA+  +T+ Q +L      +      A WE     
Sbjct: 162 IGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMD 221

Query: 61  ----YPFAVAGVNITFMIMQMLDLDAC---------QAENEWAFDLLYCVAFVVMDKQWL 120
               Y FA+ G+NIT +   +L   A          +A     F   +C       K W+
Sbjct: 222 KAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWI 281

Query: 121 ERN-ATYMEFNDVLKSTRAQLEKELLMEDV 126
           E +    MEFN V +  R ++ K+L   D+
Sbjct: 282 EEDPMDIMEFNRVREKFRKRIIKQLQNPDM 311

[Close]

BLAST of Lsi04G006780 vs. Swiss-Prot
Match: ELMOA_DICDI (ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-08
Identity = 37/144 (25.69%), Postives = 61/144 (42.36%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MG+QG DP TDFR  G   L+NL++FA+ ++  F+ ++  Q  +    EYP A AG+ +T
Sbjct: 412 MGFQGTDPCTDFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQIDRKER-EYPTATAGIVLT 471

Query: 61  FMIMQML---------------------DLDACQAENEWAFDLLYCV----------AFV 114
           F +   +                            ++   F L +             F 
Sbjct: 472 FELYNSIFKMGTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQ 531

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BLAST of Lsi04G006780 vs. TrEMBL
Match: A0A0A0KVA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589930 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.0e-71
Identity = 139/155 (89.68%), Postives = 141/155 (90.97%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT
Sbjct: 121 MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 180

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDLDA +             +ENEWAFDLLYCVAFVVMDKQWLERNATYMEFND
Sbjct: 181 FMIMQMLDLDASKPRTFIRSVFLQMLSENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 240

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDY 143
           VLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDY
Sbjct: 241 VLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDY 275

[Close]

BLAST of Lsi04G006780 vs. TrEMBL
Match: W9RSL9_9ROSA (ELMO domain-containing protein A OS=Morus notabilis GN=L484_005474 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.5e-65
Identity = 128/150 (85.33%), Postives = 134/150 (89.33%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQ LL+KQGGK AAWEYPFAVAGVNIT
Sbjct: 156 MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLKKQGGKRAAWEYPFAVAGVNIT 215

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDLDA +             +ENEWAFDLLYCVAFVVMDKQWLERNATYMEFND
Sbjct: 216 FMIMQMLDLDALKPRTFVRAVFLQILSENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 275

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           VLKSTRAQLE+ELLM+DVLRIEDMPSY+LL
Sbjct: 276 VLKSTRAQLERELLMDDVLRIEDMPSYSLL 305

[Close]

BLAST of Lsi04G006780 vs. TrEMBL
Match: A0A061E4B7_THECC (ELMO/CED-12 family protein isoform 2 OS=Theobroma cacao GN=TCM_008856 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-64
Identity = 127/150 (84.67%), Postives = 134/150 (89.33%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQ LL+KQGGK AAWEYPFAVAGVNIT
Sbjct: 119 MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLKKQGGKRAAWEYPFAVAGVNIT 178

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDLDA +             +ENEWAFDLLYCVAF+VMDKQWLERNATYMEFND
Sbjct: 179 FMIMQMLDLDASKPRTFIRSVFLQMLSENEWAFDLLYCVAFMVMDKQWLERNATYMEFND 238

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           VLKSTRAQLE+ELLM+DVLRIEDMPSY+LL
Sbjct: 239 VLKSTRAQLERELLMDDVLRIEDMPSYSLL 268

[Close]

BLAST of Lsi04G006780 vs. TrEMBL
Match: A0A061E4H4_THECC (ELMO/CED-12 domain-containing protein isoform 3 OS=Theobroma cacao GN=TCM_008856 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-64
Identity = 127/150 (84.67%), Postives = 134/150 (89.33%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQ LL+KQGGK AAWEYPFAVAGVNIT
Sbjct: 119 MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLKKQGGKRAAWEYPFAVAGVNIT 178

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDLDA +             +ENEWAFDLLYCVAF+VMDKQWLERNATYMEFND
Sbjct: 179 FMIMQMLDLDASKPRTFIRSVFLQMLSENEWAFDLLYCVAFMVMDKQWLERNATYMEFND 238

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           VLKSTRAQLE+ELLM+DVLRIEDMPSY+LL
Sbjct: 239 VLKSTRAQLERELLMDDVLRIEDMPSYSLL 268

[Close]

BLAST of Lsi04G006780 vs. TrEMBL
Match: A0A061EC60_THECC (ELMO/CED-12 domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_008856 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-64
Identity = 127/150 (84.67%), Postives = 134/150 (89.33%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQ LL+KQGGK AAWEYPFAVAGVNIT
Sbjct: 176 MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLKKQGGKRAAWEYPFAVAGVNIT 235

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDLDA +             +ENEWAFDLLYCVAF+VMDKQWLERNATYMEFND
Sbjct: 236 FMIMQMLDLDASKPRTFIRSVFLQMLSENEWAFDLLYCVAFMVMDKQWLERNATYMEFND 295

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           VLKSTRAQLE+ELLM+DVLRIEDMPSY+LL
Sbjct: 296 VLKSTRAQLERELLMDDVLRIEDMPSYSLL 325

[Close]

BLAST of Lsi04G006780 vs. TAIR10
Match: AT1G67400.1 (AT1G67400.1 ELMO/CED-12 family protein)

HSP 1 Score: 238.8 bits (608), Expect = 2.1e-63
Identity = 117/150 (78.00%), Postives = 130/150 (86.67%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQG+DPSTDFRGAGFISLENLLFFAKTFSTSFQ LL KQGGK AAWEYPFAVAGVNIT
Sbjct: 131 MGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAAWEYPFAVAGVNIT 190

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDL+A +             +E+EWAFDLLYCVAFVVMDKQWL++NATYMEFND
Sbjct: 191 FMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFDLLYCVAFVVMDKQWLDKNATYMEFND 250

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           VL+ TR QLE+EL+M+DV RIEDMPS++LL
Sbjct: 251 VLRCTRGQLERELMMDDVFRIEDMPSFSLL 280

[Close]

BLAST of Lsi04G006780 vs. TAIR10
Match: AT2G44770.1 (AT2G44770.1 ELMO/CED-12 family protein)

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-51
Identity = 95/150 (63.33%), Postives = 118/150 (78.67%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQG+DPSTDFRG GFISLENLL+FA+ F  SFQ LLRKQ G  + WEYPFAVAG+N+T
Sbjct: 115 MGWQGKDPSTDFRGGGFISLENLLYFARNFQKSFQDLLRKQVGDRSVWEYPFAVAGINLT 174

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FM++QMLDL+A +             +ENE AFDLLYC+AF +MD+QWL   A+YMEFN 
Sbjct: 175 FMLIQMLDLEAVKPRTIVGATFLKFLSENESAFDLLYCIAFKLMDQQWLSMRASYMEFNT 234

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           V+KSTR QLE+EL++ED++ +ED+PSY LL
Sbjct: 235 VMKSTRRQLERELMLEDIMHLEDLPSYALL 264

[Close]

BLAST of Lsi04G006780 vs. TAIR10
Match: AT3G60260.1 (AT3G60260.1 ELMO/CED-12 family protein)

HSP 1 Score: 193.7 bits (491), Expect = 7.6e-50
Identity = 93/150 (62.00%), Postives = 116/150 (77.33%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQG+DPSTDFRG GFISLENLL+FA+ F  SF  LLRKQ G  + WEYPFAVAG+NIT
Sbjct: 115 MGWQGKDPSTDFRGGGFISLENLLYFARKFPKSFHGLLRKQVGDRSVWEYPFAVAGINIT 174

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FM++QMLDL+A +             + NE AFDLLYC+AF +MD+QWL   A+YMEFN 
Sbjct: 175 FMLIQMLDLEAVKPRSIVGETFLRFLSVNESAFDLLYCIAFKLMDQQWLSMRASYMEFNT 234

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           V+KSTR QLE+E+++ED+  +ED+PSY+LL
Sbjct: 235 VMKSTRRQLEREIMIEDITSLEDLPSYSLL 264

[Close]

BLAST of Lsi04G006780 vs. TAIR10
Match: AT3G03610.1 (AT3G03610.1 ELMO/CED-12 family protein)

HSP 1 Score: 192.6 bits (488), Expect = 1.7e-49
Identity = 95/150 (63.33%), Postives = 113/150 (75.33%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQG DPSTDFRG G+ISLENL+FFAKT+  SFQ LL KQ G  A WEYPFAVAG+NI+
Sbjct: 172 MGWQGTDPSTDFRGGGYISLENLIFFAKTYPESFQRLLHKQDGTRAEWEYPFAVAGINIS 231

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FM+ QMLDL + +              E+E AFD LYC+AF +MD QWL R A+YMEFND
Sbjct: 232 FMLAQMLDLQSGKPSTIAGIRFLGFLEEDEMAFDNLYCIAFQMMDAQWLARRASYMEFND 291

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           VLKSTRAQLE+EL ++DV  I D+P++NLL
Sbjct: 292 VLKSTRAQLERELALDDVSSITDLPAFNLL 321

[Close]

BLAST of Lsi04G006780 vs. TAIR10
Match: AT1G03620.1 (AT1G03620.1 ELMO/CED-12 family protein)

HSP 1 Score: 178.7 bits (452), Expect = 2.5e-45
Identity = 87/151 (57.62%), Postives = 112/151 (74.17%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQG +PSTDFRG GFI+LENLLF A+T+   F+ LL KQ G  A WEYPFAVAG+NI+
Sbjct: 113 MGWQGPNPSTDFRGCGFIALENLLFSARTYPVCFRRLLLKQRGDRAKWEYPFAVAGINIS 172

Query: 61  FMIMQMLDLD--------------ACQAENEWAFDLLYCVAFVVMDKQWLERNATYMEFN 120
           FM++QMLDL                   E+E AFD+LYC+AF +MD QWL  +A+YMEFN
Sbjct: 173 FMLIQMLDLQNNPKPKCLPGMNFLKLLEEDERAFDVLYCIAFAMMDAQWLAMHASYMEFN 232

Query: 121 DVLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           +VL++TR QLE+EL ++D+ RI+D+P+YNLL
Sbjct: 233 EVLQATRNQLERELSLDDIHRIQDLPAYNLL 263

[Close]

BLAST of Lsi04G006780 vs. NCBI nr
Match: gi|449435069|ref|XP_004135318.1| (PREDICTED: ELMO domain-containing protein A [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 140/156 (89.74%), Postives = 142/156 (91.03%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT
Sbjct: 121 MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 180

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDLDA +             +ENEWAFDLLYCVAFVVMDKQWLERNATYMEFND
Sbjct: 181 FMIMQMLDLDASKPRTFIRSVFLQMLSENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 240

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDYR 144
           VLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDYR
Sbjct: 241 VLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDYR 276

[Close]

BLAST of Lsi04G006780 vs. NCBI nr
Match: gi|659090486|ref|XP_008446042.1| (PREDICTED: ELMO domain-containing protein A [Cucumis melo])

HSP 1 Score: 276.2 bits (705), Expect = 3.3e-71
Identity = 139/156 (89.10%), Postives = 141/156 (90.38%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT
Sbjct: 121 MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 180

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDLDA +             +ENEWAFDLLYCVAFVVMDKQWLERNATYMEFND
Sbjct: 181 FMIMQMLDLDASKPRTFIRSVFLQMLSENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 240

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDYR 144
           VLKSTRAQLEKELLMEDV RIEDMPSYNLLLTLDYR
Sbjct: 241 VLKSTRAQLEKELLMEDVFRIEDMPSYNLLLTLDYR 276

[Close]

BLAST of Lsi04G006780 vs. NCBI nr
Match: gi|700196499|gb|KGN51676.1| (hypothetical protein Csa_5G589930 [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 4.3e-71
Identity = 139/155 (89.68%), Postives = 141/155 (90.97%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT
Sbjct: 121 MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 180

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDLDA +             +ENEWAFDLLYCVAFVVMDKQWLERNATYMEFND
Sbjct: 181 FMIMQMLDLDASKPRTFIRSVFLQMLSENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 240

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDY 143
           VLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDY
Sbjct: 241 VLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDY 275

[Close]

BLAST of Lsi04G006780 vs. NCBI nr
Match: gi|703135109|ref|XP_010105799.1| (ELMO domain-containing protein A [Morus notabilis])

HSP 1 Score: 255.0 bits (650), Expect = 7.8e-65
Identity = 128/150 (85.33%), Postives = 134/150 (89.33%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQ LL+KQGGK AAWEYPFAVAGVNIT
Sbjct: 156 MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLKKQGGKRAAWEYPFAVAGVNIT 215

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDLDA +             +ENEWAFDLLYCVAFVVMDKQWLERNATYMEFND
Sbjct: 216 FMIMQMLDLDALKPRTFVRAVFLQILSENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 275

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           VLKSTRAQLE+ELLM+DVLRIEDMPSY+LL
Sbjct: 276 VLKSTRAQLERELLMDDVLRIEDMPSYSLL 305

[Close]

BLAST of Lsi04G006780 vs. NCBI nr
Match: gi|590692390|ref|XP_007044043.1| (ELMO/CED-12 family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 253.8 bits (647), Expect = 1.7e-64
Identity = 127/150 (84.67%), Postives = 134/150 (89.33%), Query Frame = 1


Query: 1   MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQLLLRKQGGKPAAWEYPFAVAGVNIT 60
           MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQ LL+KQGGK AAWEYPFAVAGVNIT
Sbjct: 119 MGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLKKQGGKRAAWEYPFAVAGVNIT 178

Query: 61  FMIMQMLDLDACQ-------------AENEWAFDLLYCVAFVVMDKQWLERNATYMEFND 120
           FMIMQMLDLDA +             +ENEWAFDLLYCVAF+VMDKQWLERNATYMEFND
Sbjct: 179 FMIMQMLDLDASKPRTFIRSVFLQMLSENEWAFDLLYCVAFMVMDKQWLERNATYMEFND 238

Query: 121 VLKSTRAQLEKELLMEDVLRIEDMPSYNLL 138
           VLKSTRAQLE+ELLM+DVLRIEDMPSY+LL
Sbjct: 239 VLKSTRAQLERELLMDDVLRIEDMPSYSLL 268

The following BLAST results are available for this feature:

BLAST of Lsi04G006780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELMOB_DICDI	5.9e-12	29.10	ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=3 SV=1	[more]
ELMOC_DICDI	5.9e-12	30.22	ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=3 SV=1	[more]
ELMD2_MOUSE	6.1e-09	30.08	ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=1 SV=1	[more]
ELMD1_PONAB	1.4e-08	30.67	ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2 SV=1	[more]
ELMOA_DICDI	2.3e-08	25.69	ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1	[more]

BLAST of Lsi04G006780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVA2_CUCSA	3.0e-71	89.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589930 PE=4 SV=1	[more]
W9RSL9_9ROSA	5.5e-65	85.33	ELMO domain-containing protein A OS=Morus notabilis GN=L484_005474 PE=4 SV=1	[more]
A0A061E4B7_THECC	1.2e-64	84.67	ELMO/CED-12 family protein isoform 2 OS=Theobroma cacao GN=TCM_008856 PE=4 SV=1	[more]
A0A061E4H4_THECC	1.2e-64	84.67	ELMO/CED-12 domain-containing protein isoform 3 OS=Theobroma cacao GN=TCM_008856...	[more]
A0A061EC60_THECC	1.2e-64	84.67	ELMO/CED-12 domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_008856...	[more]

BLAST of Lsi04G006780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67400.1	2.1e-63	78.00	ELMO/CED-12 family protein	[more]
AT2G44770.1	1.1e-51	63.33	ELMO/CED-12 family protein	[more]
AT3G60260.1	7.6e-50	62.00	ELMO/CED-12 family protein	[more]
AT3G03610.1	1.7e-49	63.33	ELMO/CED-12 family protein	[more]
AT1G03620.1	2.5e-45	57.62	ELMO/CED-12 family protein	[more]

BLAST of Lsi04G006780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435069\|ref\|XP_004135318.1\|	1.1e-71	89.74	PREDICTED: ELMO domain-containing protein A [Cucumis sativus]	[more]
gi\|659090486\|ref\|XP_008446042.1\|	3.3e-71	89.10	PREDICTED: ELMO domain-containing protein A [Cucumis melo]	[more]
gi\|700196499\|gb\|KGN51676.1\|	4.3e-71	89.68	hypothetical protein Csa_5G589930 [Cucumis sativus]	[more]
gi\|703135109\|ref\|XP_010105799.1\|	7.8e-65	85.33	ELMO domain-containing protein A [Morus notabilis]	[more]
gi\|590692390\|ref\|XP_007044043.1\|	1.7e-64	84.67	ELMO/CED-12 family protein isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006816	ELMO_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G006780.1	Lsi04G006780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006816	ELMO domain	PFAM	PF04727	ELMO_CED12	coord: 1..109 score: 1.6
IPR006816	ELMO domain	PROFILE	PS51335	ELMO	coord: 1..120 score: 19
None	No IPR available	PANTHER	PTHR12771	ENGULFMENT AND CELL MOTILITY	coord: 1..143 score: 7.0E
None	No IPR available	PANTHER	PTHR12771:SF19	ELMO/CED-12 DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..143 score: 7.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G006780	Csa5G589930	Cucumber (Chinese Long) v2	culsiB368
Lsi04G006780	CSPI05G21470	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G006780	Cucsa.075650	Cucumber (Gy14) v1	cgylsiB076
Lsi04G006780	CmaCh04G018310	Cucurbita maxima (Rimu)	cmalsiB670
Lsi04G006780	CmoCh04G019270	Cucurbita moschata (Rifu)	cmolsiB661
Lsi04G006780	Cla022968	Watermelon (97103) v1	lsiwmB339
Lsi04G006780	MELO3C011870	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G006780	ClCG11G013710	Watermelon (Charleston Gray)	lsiwcgB264
Lsi04G006780	MELO3C011870.2	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G006780	Cla97C11G219630	Watermelon (97103) v2	lsiwmbB271
Lsi04G006780	Bhi07G001525	Wax gourd	lsiwgoB380
Lsi04G006780	CsGy5G020990	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G006780	Carg19260	Silver-seed gourd	carlsiB275
Lsi04G006780	CsaV3_5G030320	Cucumber (Chinese Long) v3	cuclsiB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G006780	Watermelon (97103) v2	lsiwmbB305
Lsi04G006780	Wax gourd	lsiwgoB367
Lsi04G006780	Bottle gourd (USVL1VR-Ls)	lsilsiB149
Lsi04G006780	Cucumber (Gy14) v1	cgylsiB636
Lsi04G006780	Cucurbita maxima (Rimu)	cmalsiB172
Lsi04G006780	Cucurbita maxima (Rimu)	cmalsiB383
Lsi04G006780	Cucurbita moschata (Rifu)	cmolsiB160
Lsi04G006780	Cucurbita moschata (Rifu)	cmolsiB368
Lsi04G006780	Cucurbita pepo (Zucchini)	cpelsiB030
Lsi04G006780	Cucurbita pepo (Zucchini)	cpelsiB353
Lsi04G006780	Cucurbita pepo (Zucchini)	cpelsiB672
Lsi04G006780	Wild cucumber (PI 183967)	cpilsiB116
Lsi04G006780	Cucumber (Chinese Long) v2	culsiB119
Lsi04G006780	Melon (DHL92) v3.5.1	lsimeB303
Lsi04G006780	Watermelon (Charleston Gray)	lsiwcgB308
Lsi04G006780	Watermelon (97103) v1	lsiwmB296
Lsi04G006780	Cucumber (Gy14) v2	cgyblsiB105
Lsi04G006780	Melon (DHL92) v3.6.1	lsimedB317
Lsi04G006780	Silver-seed gourd	carlsiB567
Lsi04G006780	Silver-seed gourd	carlsiB629
Lsi04G006780	Cucumber (Chinese Long) v3	cuclsiB131