Lsi04G006260 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G006260
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPectin lyase-like superfamily protein, putative
Locationchr04 : 5730924 .. 5731832 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATGGGAAAAAGGTTGTGGATATGATGGTTCTGCAGTGGTTTTAATACCACAAGGCACCTTCTTGGTTTTCCCAATGAAACTTGAAGGTCCTTGCCATGGCTCAATTAAACTACAGATCGACGGCAATGTCTTGGCTCCTCACGATAAACTTTTCATCAAGGGTGAATACTGGCTCGCCCTCCATCAGGTCAACAATTTGATCGTCGACGGTCAAGGGGGGTTCGACGGCCAAGGCTCTTCCGCTTGGGGTTATAGAGGTCACGACCGTCCAATCGTAAGTTTATTTTCATTTCTTTTAGTTCACAAATTGAGGATAACTCAACTAGTTTAGATTAGAGATTTAAATTCGATTACGTTTTTTGATTTCATGCAGACATTAAAATTTACTGCAATCAACAATGCGACGATAAGGAACATCAAGTCTGTGGACAGTAAATTCTTCCATTTTGCAGTGCACGAAAGCGAAAACATGACGTTTGATAATGTCACACTCATAGCTCCAAAAAACAGTTCCAACACGGATGGAATCCACATCTCCAAATCAACTAACATCAACATCTTCAACTCAGTGATGAGCACAGGAGACGATTGCATCTCCATGGGTCATGGAAGCCAAAACATCAATATAACCAATGTTCAATGTGGTCCAGGCCACGGAATCAGCATCGGAAGCCTTGGCCAAGATCCGAAAGAATTAAATGTGACCAAAATCACCGTAAGACACTCCATATTCAAAAATACCAAAAATGGTGTGAGGATCAAATCATGGTCCACCCCAAATCCAAGTATAGTTACCAAAGTTTCATTCATCCATCTTCAAATGGAGAATGTCGAAAATCCTATCATCATCGATCAAAACTATTGCCCTCATTGCTCTAGCAATCATCAACATCAACTGGTATAA

mRNA sequence

ATGGCATGGGAAAAAGGTTGTGGATATGATGGTTCTGCAGTGGTTTTAATACCACAAGGCACCTTCTTGGTTTTCCCAATGAAACTTGAAGGTCCTTGCCATGGCTCAATTAAACTACAGATCGACGGCAATGTCTTGGCTCCTCACGATAAACTTTTCATCAAGGGTGAATACTGGCTCGCCCTCCATCAGGTCAACAATTTGATCGTCGACGGTCAAGGGGGGTTCGACGGCCAAGGCTCTTCCGCTTGGGGTTATAGAGGTCACGACCGTCCAATCACATTAAAATTTACTGCAATCAACAATGCGACGATAAGGAACATCAAGTCTGTGGACAGTAAATTCTTCCATTTTGCAGTGCACGAAAGCGAAAACATGACGTTTGATAATGTCACACTCATAGCTCCAAAAAACAGTTCCAACACGGATGGAATCCACATCTCCAAATCAACTAACATCAACATCTTCAACTCAGTGATGAGCACAGGAGACGATTGCATCTCCATGGGTCATGGAAGCCAAAACATCAATATAACCAATGTTCAATGTGGTCCAGGCCACGGAATCAGCATCGGAAGCCTTGGCCAAGATCCGAAAGAATTAAATGTGACCAAAATCACCGTAAGACACTCCATATTCAAAAATACCAAAAATGGTGTGAGGATCAAATCATGGTCCACCCCAAATCCAAGTATAGTTACCAAAGTTTCATTCATCCATCTTCAAATGGAGAATGTCGAAAATCCTATCATCATCGATCAAAACTATTGCCCTCATTGCTCTAGCAATCATCAACATCAACTGGTATAA

Coding sequence (CDS)

ATGGCATGGGAAAAAGGTTGTGGATATGATGGTTCTGCAGTGGTTTTAATACCACAAGGCACCTTCTTGGTTTTCCCAATGAAACTTGAAGGTCCTTGCCATGGCTCAATTAAACTACAGATCGACGGCAATGTCTTGGCTCCTCACGATAAACTTTTCATCAAGGGTGAATACTGGCTCGCCCTCCATCAGGTCAACAATTTGATCGTCGACGGTCAAGGGGGGTTCGACGGCCAAGGCTCTTCCGCTTGGGGTTATAGAGGTCACGACCGTCCAATCACATTAAAATTTACTGCAATCAACAATGCGACGATAAGGAACATCAAGTCTGTGGACAGTAAATTCTTCCATTTTGCAGTGCACGAAAGCGAAAACATGACGTTTGATAATGTCACACTCATAGCTCCAAAAAACAGTTCCAACACGGATGGAATCCACATCTCCAAATCAACTAACATCAACATCTTCAACTCAGTGATGAGCACAGGAGACGATTGCATCTCCATGGGTCATGGAAGCCAAAACATCAATATAACCAATGTTCAATGTGGTCCAGGCCACGGAATCAGCATCGGAAGCCTTGGCCAAGATCCGAAAGAATTAAATGTGACCAAAATCACCGTAAGACACTCCATATTCAAAAATACCAAAAATGGTGTGAGGATCAAATCATGGTCCACCCCAAATCCAAGTATAGTTACCAAAGTTTCATTCATCCATCTTCAAATGGAGAATGTCGAAAATCCTATCATCATCGATCAAAACTATTGCCCTCATTGCTCTAGCAATCATCAACATCAACTGGTATAA

Protein sequence

MAWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWLALHQVNNLIVDGQGGFDGQGSSAWGYRGHDRPITLKFTAINNATIRNIKSVDSKFFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQNINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVTKVSFIHLQMENVENPIIIDQNYCPHCSSNHQHQLV
Homology
[Close]
BLAST of Lsi04G006260 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.3e-64
Identity = 122/272 (44.85%), Postives = 169/272 (62.13%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGS-IKLQIDGNVLAPHDKLFIKGEYWL 61
           AW+  C   G + VLIP+G + +  + ++GPC GS I  QIDG V AP D    K + W+
Sbjct: 30  AWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKGSKIGFQIDGVVKAPADPSKFKSDGWV 89

Query: 62  ALHQVNNLIVDGQGGFDGQGSSAWGYRGHDR-------PITLKFTAINNATIRNIKSVDS 121
           + ++++ L V G G  DGQG +AW     D+        + L+F  + +A +R+I S++S
Sbjct: 90  SFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNCKHAAMNLRFDFLKHAMVRDITSLNS 149

Query: 122 KFFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGS 181
           K FH  V E E++TF +VT+ AP  S NTDGIH+  S  + I N+ ++TGDDCIS+G GS
Sbjct: 150 KMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGVTITNTKIATGDDCISIGPGS 209

Query: 182 QNINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIV 241
           QN+ IT V CGPGHGISIGSLG+   E  V  ITV+   F  T NGVR+K+W    P   
Sbjct: 210 QNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGCTFSGTMNGVRVKTWPNSPPGAA 269

Query: 242 TKVSFIHLQMENVENPIIIDQNYCPHCSSNHQ 266
           T ++F  L M NV+NP+I+DQ YCP+   + Q
Sbjct: 270 TDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQ 301

[Close]
BLAST of Lsi04G006260 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.9e-62
Identity = 114/266 (42.86%), Postives = 171/266 (64.29%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWLA 61
           A+++ C     + ++IP+GTF +  +KLEGPC   ++LQI   + AP D   +K   WL 
Sbjct: 47  AFKEACQSTSPSTIVIPKGTFTMNQVKLEGPCKSPLELQIQATLKAPSDPSQLKVGEWLT 106

Query: 62  LHQVNNLIVDGQGGFDGQGSSAWGYRGHDR----PITLKFTAINNATIRNIKSVDSKFFH 121
           +++++   + G G  DGQ ++AW  +   +    P  L F ++ N+TI++I ++DSK FH
Sbjct: 107 VNKLDQFTMSGGGILDGQAAAAWECKQSKKCNKLPNNLSFNSLTNSTIKDITTLDSKSFH 166

Query: 122 FAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQNIN 181
             V++ +N+TF    + AP NS NTDGIH+S+S+++NI +S  STGDDCIS+G  ++ + 
Sbjct: 167 VNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLY 226

Query: 182 ITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVTKVS 241
           IT V CGPGHGIS+GSLG +P E  V  + VR+  F NT NGVRIK+W   +P +V  V 
Sbjct: 227 ITRVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPASHPGVVNDVH 286

Query: 242 FIHLQMENVENPIIIDQNYCPHCSSN 264
           F  + ++NV NP++IDQ YCP    N
Sbjct: 287 FEDIIVQNVSNPVVIDQVYCPFNKCN 312

[Close]
BLAST of Lsi04G006260 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.2e-60
Identity = 116/266 (43.61%), Postives = 167/266 (62.78%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWLA 61
           AW++ C     + +L+P+G F V  + LEGPC  SI LQ+ G + AP D   IKG  W+ 
Sbjct: 9   AWKEACASASPSTILVPKGNFAVGLITLEGPCKSSIGLQLQGTLKAPADPSKIKGLGWIN 68

Query: 62  LHQVNNLIVDGQGGFDGQGSSAWGYRGHDR--PI------TLKFTAINNATIRNIKSVDS 121
           L++++ L + G G FDGQG SAW      +  PI       L+  A+ N+ +R++ ++DS
Sbjct: 69  LNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSILRDVTTLDS 128

Query: 122 KFFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGS 181
           K FH  V   +N+TF+   + A + S NTDGIHI +S  +NI N+ + TGDDCIS+G GS
Sbjct: 129 KNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDDCISLGDGS 188

Query: 182 QNINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIV 241
           +NINITN+ CGPGHGIS+GSLG+   E +V  I V++     ++NGVRIK+W    P   
Sbjct: 189 KNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTWPKSEPGEA 248

Query: 242 TKVSFIHLQMENVENPIIIDQNYCPH 260
           +++ F  + M +V  PI+IDQ YCP+
Sbjct: 249 SEMHFQDITMNSVGTPILIDQGYCPY 274

[Close]
BLAST of Lsi04G006260 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.4e-59
Identity = 118/282 (41.84%), Postives = 171/282 (60.64%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKG-EYWL 61
           AW + C    +A ++IP GT+ +  ++L+GPC   I+LQ+DG + AP D   IKG E W 
Sbjct: 45  AWNEACASTTAAKIVIPAGTYQLNGIELKGPCKAPIELQVDGTIQAPADPSVIKGTEQWF 104

Query: 62  ALHQVNNLIVDGQGGFDGQGS---------SAWGYRGHDRPITLKF--TAINNATIRNIK 121
               +++L + G+G FDGQG+         SAW  +  +  + + F    +NN+ +R + 
Sbjct: 105 KFLYMDHLTLSGKGVFDGQGATVYKKAAPASAWSGKNSNSKVFMNFGFNFVNNSIVRGVT 164

Query: 122 SVDSKFFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISM 181
           S DSK FH  V   +N+TFD  T+ AP +S NTDGIH+ KST++ I N+ + TGDDC+S+
Sbjct: 165 SKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSI 224

Query: 182 GHGSQNINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSW-STP 241
           G GS+ I +  V CGPGHG+S+GSLG+   E NV  ITV++     T NGVRIK+W   P
Sbjct: 225 GDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAP 284

Query: 242 NPSIVTKVSFIHLQMENVENPIIIDQNYCP--HCSSNHQHQL 269
               V+ + F  + M NV+NP+IIDQ Y P   CS  +  ++
Sbjct: 285 GTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKI 326

[Close]
BLAST of Lsi04G006260 vs. Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.0e-57
Identity = 113/273 (41.39%), Postives = 165/273 (60.44%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGE-YWL 61
           AW   CG  G   +LIP+G FLV  +   GPC G + +Q+DGN+LA  D    K    W+
Sbjct: 63  AWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYKEHGNWI 122

Query: 62  ALHQVNNLIVDGQGGFDGQGSSAWGYRGHDR-------PITLKFTAINNATIRNIKSVDS 121
            + +V+NL++ G+G  DGQG + W      +       P +L    +NN  +  +  ++S
Sbjct: 123 EILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNS 182

Query: 122 KFFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGS 181
           KFFH  +++ +NM   +VT+ AP +S NTDGIH+  S+ I I N+V+  GDDCIS+G G+
Sbjct: 183 KFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGT 242

Query: 182 QNINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSW-STPNPSI 241
             +NIT V CGPGHGISIGSLG+   E +VT I V+    K T  GVRIK++    +   
Sbjct: 243 SKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLT 302

Query: 242 VTKVSFIHLQMENVENPIIIDQNYCPH--CSSN 264
           V+K+ + +++ME+  NPI ID  YCP+  C++N
Sbjct: 303 VSKIHYENIKMEDSANPIFIDMKYCPNKLCTAN 335

[Close]
BLAST of Lsi04G006260 vs. TrEMBL
Match: A0A0A0L7H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063610 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 6.0e-89
Identity = 155/258 (60.08%), Postives = 201/258 (77.91%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIP-QGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWL 61
           AW + C  +G  +VLIP +G FLV P+ L+GPCHG I++Q+DG +LAP D+ F  G+YWL
Sbjct: 20  AWSEACTNNGGGIVLIPAKGRFLVLPLLLQGPCHGFIRIQLDGELLAPLDEHFATGDYWL 79

Query: 62  ALHQVNNLIVDGQGGFDGQGSSAWGYRGHDRPITLKFTAINNATIRNIKSVDSKFFHFAV 121
           ++ QVNNL +DG G  DG+GS+AW    H+RP++++   INNA I NIKS +SK FHFA+
Sbjct: 80  SIDQVNNLFIDGLGSLDGRGSTAWPSTSHNRPVSMRLNGINNARITNIKSYNSKLFHFAM 139

Query: 122 HESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQNINITN 181
           H   ++TFD+VT+IAP NS NTDGIHIS S+ INI +S + TGDDCIS+G GS+ INITN
Sbjct: 140 HGCRDVTFDHVTVIAPANSPNTDGIHISSSSGINIMHSTIGTGDDCISLGPGSKFINITN 199

Query: 182 VQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVTKVSFIH 241
           +QCGPGHGISIGSLG+ P E +V ++TVR S F  T NGVRIK+WS+   S+V+KV+F++
Sbjct: 200 IQCGPGHGISIGSLGKYPNEEDVFEVTVRDSTFIGTSNGVRIKTWSSSYSSMVSKVTFLN 259

Query: 242 LQMENVENPIIIDQNYCP 259
           LQM NV+NPIIIDQNYCP
Sbjct: 260 LQMNNVKNPIIIDQNYCP 277

[Close]
BLAST of Lsi04G006260 vs. TrEMBL
Match: A0A061F588_THECC (Pectin lyase-like superfamily protein, putative OS=Theobroma cacao GN=TCM_030754 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.4e-68
Identity = 127/264 (48.11%), Postives = 173/264 (65.53%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWLA 61
           AW++ C   G++VVLIP GT+LV P   +GPC G+I  Q+ G + AP D   +  ++W++
Sbjct: 56  AWKQACQSGGNSVVLIPLGTYLVLPTVFQGPCKGAIAFQVKGLLRAPTDAASLHLDHWIS 115

Query: 62  LHQVNNLIVDGQGGFDGQGSSAWGYRG-------HDRPITLKFTAINNATIRNIKSVDSK 121
              ++ L + G G  DGQG+SAW Y            P+TL+F  + N+ I +I S++SK
Sbjct: 116 FRYIDRLTITGGGSLDGQGASAWPYNTCLTDPNCPPFPVTLRFDFVTNSWINHITSINSK 175

Query: 122 FFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQ 181
            FHF +  S N+    V + AP +S NTDGIHI  ST I+I +S ++TGDDC+SMG GSQ
Sbjct: 176 NFHFNIFASTNIRIHQVNISAPGDSPNTDGIHIGDSTGIHISDSEIATGDDCVSMGPGSQ 235

Query: 182 NINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVT 241
           NINITNV CGPGHG S+GSLG+ P E +V  +TVR+     T NG+RIK+WS  + S  +
Sbjct: 236 NINITNVHCGPGHGFSVGSLGKSPNEKDVAGVTVRNCTLTGTLNGLRIKTWSPSHSSRCS 295

Query: 242 KVSFIHLQMENVENPIIIDQNYCP 259
            V+F H+ +ENV NPI IDQNYCP
Sbjct: 296 DVTFEHVNVENVNNPIFIDQNYCP 319

[Close]
BLAST of Lsi04G006260 vs. TrEMBL
Match: A9YUH5_PLAOI (Pollen allergen Pla o 2 OS=Platanus orientalis PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.3e-64
Identity = 123/266 (46.24%), Postives = 169/266 (63.53%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGS-IKLQIDGNVLAPHDKLFIKGEYWL 61
           AWE  C   G + VLIP G +++  + LEGPC GS I  Q+DG V AP D    K E W+
Sbjct: 31  AWEAACASPGPSTVLIPTGNYIMGEVLLEGPCKGSKIGFQLDGVVKAPADVSAFKSEGWV 90

Query: 62  ALHQVNNLIVDGQGGFDGQGSSAWGYRGHDR-------PITLKFTAINNATIRNIKSVDS 121
             + V+ L V G+G FDGQG  AW     D+       P+ ++F  + NA +R+I S++S
Sbjct: 91  VFNHVDGLTVSGKGTFDGQGQKAWAANNCDKDENCNRPPMNIRFNFLKNAVVRDITSMNS 150

Query: 122 KFFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGS 181
           K FH  V E +N++F +VT+ AP  S NTDGIHI  S  + I ++ ++TGDDC+S+G GS
Sbjct: 151 KMFHINVLECDNISFQHVTISAPGTSINTDGIHIGLSRGVTITDTNIATGDDCVSIGPGS 210

Query: 182 QNINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIV 241
           QN+ +T V CGPGHGIS+GSLG+   E +V  ITV    F  T NGVR+K+W    P + 
Sbjct: 211 QNVTVTKVNCGPGHGISVGSLGKYKDEKDVRGITVTGCTFTGTSNGVRVKTWPDSPPGVA 270

Query: 242 TKVSFIHLQMENVENPIIIDQNYCPH 260
           T ++F  L M+NV+NP+I+DQ YCP+
Sbjct: 271 TDMAFEDLTMKNVQNPVILDQEYCPY 296

[Close]
BLAST of Lsi04G006260 vs. TrEMBL
Match: A0A059CRS9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02249 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.0e-64
Identity = 118/265 (44.53%), Postives = 171/265 (64.53%), Query Frame = 1 

Query: 3   WEKGCGYDGSAV--VLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWL 62
           W + C Y+G +   +L+P GT++V+P+ L+GPC G I + ++G V  P DK     ++W+
Sbjct: 61  WTQTCHYEGGSERRLLVPLGTYMVWPVVLKGPCAGPITVTVEGVVKGPVDKSTFSLDHWI 120

Query: 63  ALHQVNNLIVDGQGGFDGQGSSAWGYRGHDR-------PITLKFTAINNATIRNIKSVDS 122
               V+ L++DG G FDGQG  AW Y    +       P++L+F  + NA I NI SV+S
Sbjct: 121 TFQSVDGLLIDGGGTFDGQGQEAWSYNNCSKNSNCKLLPVSLRFNYVKNALISNITSVNS 180

Query: 123 KFFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGS 182
            FFHF +   + + F +V ++AP  S NTDGIHI  S+ I I +SV+STGDDC+S+G GS
Sbjct: 181 MFFHFVLFSCDALEFRHVRIVAPDESPNTDGIHIGHSSRITIADSVISTGDDCVSVGPGS 240

Query: 183 QNINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIV 242
           + + +  VQCGPGHG S+GSLG+ P E +V++++V       T+NGVRIK+W++P  S  
Sbjct: 241 KGVKVVGVQCGPGHGFSVGSLGKYPGEADVSELSVSGCTMVGTQNGVRIKTWASPLESSA 300

Query: 243 TKVSFIHLQMENVENPIIIDQNYCP 259
             +SF  + M NV NPIII+Q YCP
Sbjct: 301 YNISFQDITMNNVSNPIIINQEYCP 325

[Close]
BLAST of Lsi04G006260 vs. TrEMBL
Match: D7T9Y0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00340 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 5.1e-64
Identity = 120/269 (44.61%), Postives = 170/269 (63.20%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWLA 61
           AW + C + G+ VVLIP+GT++V P+K +GPC G       G VLAP D   I  + W+A
Sbjct: 52  AWNEACHWKGTGVVLIPRGTYMVHPVKFQGPCSGRTMFLNTGEVLAPTDPALIHADNWIA 111

Query: 62  LHQVNNLIVDGQGGFDGQGSSAW-------GYRGHDRPITLKFTAINNATIRNIKSVDSK 121
             +++ L V G G F+GQG   W        Y       +L F  + N  I +I S++SK
Sbjct: 112 FQEIDGLRVSGGGSFNGQGEKVWHNNVCHKNYNCKPLSSSLSFKFVTNGRIDHITSINSK 171

Query: 122 FFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQ 181
            FHF +++++ ++ ++V ++AP  S NTDGIHI +S +I I NS + TGDDCIS+  GS+
Sbjct: 172 MFHFNIYDNQKISINHVKILAPAESPNTDGIHIGRSNDIRITNSEIRTGDDCISLKQGSR 231

Query: 182 NINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVT 241
           +I+I NVQCGPGHGIS+GSLG+D  E  V  ITVR+  F+ + NG+RIK+W+    +I +
Sbjct: 232 DIHIQNVQCGPGHGISVGSLGKDEGEEEVRGITVRNCTFQGSDNGLRIKTWAASTRNIAS 291

Query: 242 KVSFIHLQMENVENPIIIDQNYCPHCSSN 264
             +F  + +ENV NPI IDQ YCPH   N
Sbjct: 292 DFTFEDIVVENVRNPINIDQEYCPHPPCN 320

[Close]
BLAST of Lsi04G006260 vs. TAIR10
Match: AT1G17150.1 (AT1G17150.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 224.6 bits (571), Expect = 7.5e-59
Identity = 118/271 (43.54%), Postives = 168/271 (61.99%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWLA 61
           AW+  C ++G + + IP GTF +  +   GPC G I   IDG +LAP +   IK E W+ 
Sbjct: 55  AWKDACRWNGPSKMYIPLGTFYLGGVTFVGPCDGKISFVIDGTLLAPPNNDDIKKEIWIN 114

Query: 62  LHQVNNLIVDGQGGFDGQGSSAWGY----RGHDRP---ITLKFTAINNATIRNIKSVDSK 121
              +N L V G G  DGQG  +W      + ++ P   I + F  + N+++  I S++SK
Sbjct: 115 FRYINYLTVFGDGTLDGQGKKSWSLIDCQKDNNCPKLAINMGFDFVKNSSMNGITSLNSK 174

Query: 122 FFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQ 181
             HF     ++ +   V +IAP NS NTDGI I+ S+N+ I N+ +STGDDCI+M  G+ 
Sbjct: 175 AGHFNFLSVDHFSITRVNIIAPSNSPNTDGIKIALSSNMQISNTHISTGDDCIAMLSGNT 234

Query: 182 NINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSI-V 241
           N +I NV+CGPGHGISIGSLG++  E NV  + VR+S+F  T NG+RIK+W +   +I +
Sbjct: 235 NFDIYNVKCGPGHGISIGSLGKNKDEKNVNGLMVRNSVFTGTTNGIRIKTWESSASTIRI 294

Query: 242 TKVSFIHLQMENVENPIIIDQNYCPH--CSS 263
             + + +LQM NVENPI IDQ YCP+  CS+
Sbjct: 295 INLVYENLQMINVENPIGIDQKYCPYPPCSN 325

[Close]
BLAST of Lsi04G006260 vs. TAIR10
Match: AT1G65570.1 (AT1G65570.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 222.2 bits (565), Expect = 3.7e-58
Identity = 116/270 (42.96%), Postives = 167/270 (61.85%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVF-PMKLEGPCHGS--IKLQIDGNVLAPHD-KLFIKGE 61
           AW+  CG + S V+ +P+G +LV   ++ EG    S  I L+IDG ++ P D  L  K E
Sbjct: 53  AWDAACGVEDSVVIYVPKGRYLVSGEVRFEGESCKSREITLRIDGTLIGPQDYSLLGKKE 112

Query: 62  YWLALHQVNNLIVDGQGGFDGQGSSAW-----GYRGHDRPITLKFTAINNATIRNIKSVD 121
            W +   V+N+ V G G FD +GS+ W     GY   +   TL+F   NN  I+ + S++
Sbjct: 113 NWFSFSGVHNVTVLG-GSFDAKGSTLWSCKANGYNCPEGATTLRFMDSNNVKIKGVLSLN 172

Query: 122 SKFFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHG 181
           S+ FH A++   N+  ++V +IAP  S NTDGIHI  ST+I + N+ + TGDDCIS+G G
Sbjct: 173 SQLFHIAINRCRNIKIEDVRIIAPDESPNTDGIHIQLSTDIEVRNASIKTGDDCISIGPG 232

Query: 182 SQNINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSI 241
           ++N+ +  + CGPGHGISIGSL +  +E  V  +TV++++F  T NG+RIKSW   +   
Sbjct: 233 TKNLMVDGITCGPGHGISIGSLAKSIEEQGVENVTVKNAVFVRTDNGLRIKSWPRHSNGF 292

Query: 242 VTKVSFIHLQMENVENPIIIDQNYCPHCSS 263
           V +V F+   M NV  PI+IDQNYCP  SS
Sbjct: 293 VERVRFLGAIMVNVSYPILIDQNYCPGDSS 321

[Close]
BLAST of Lsi04G006260 vs. TAIR10
Match: AT1G05660.1 (AT1G05660.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 222.2 bits (565), Expect = 3.7e-58
Identity = 112/263 (42.59%), Postives = 161/263 (61.22%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHD-KLFIKGEYWL 61
           AW+  C    SA V++P+GTFL+  +   GPC   I  Q+ G V+AP D + F    +W+
Sbjct: 50  AWQGACVSASSATVVVPKGTFLLKVITFGGPCKSKITFQVAGTVIAPEDYRTFGNSGFWI 109

Query: 62  ALHQVNNLIVDGQGGFDGQGSSAWGYR--GHDRPITLKFTAINNAT---IRNIKSVDSKF 121
             ++VN   + G G FD + +  W  R  G + P  ++  + N+A    I  +KS++S+ 
Sbjct: 110 LFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQV 169

Query: 122 FHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQN 181
            H  ++   N+   NV L+AP NS NTDG H+  ST +    S + TGDDC+++G G++N
Sbjct: 170 THMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQHSTGVTFTGSTVQTGDDCVAIGPGTRN 229

Query: 182 INITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVTK 241
           + IT + CGPGHG+SIGSL ++ KE  V  +TV  S+F  ++NGVRIKSW+ P+   V  
Sbjct: 230 LLITKLACGPGHGVSIGSLAKELKEDGVENVTVSSSVFTGSQNGVRIKSWARPSNGFVRT 289

Query: 242 VSFIHLQMENVENPIIIDQNYCP 259
           V F  L M+NVENPIIIDQNYCP
Sbjct: 290 VFFQDLVMKNVENPIIIDQNYCP 311

[Close]
BLAST of Lsi04G006260 vs. TAIR10
Match: AT3G14040.1 (AT3G14040.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 221.9 bits (564), Expect = 4.9e-58
Identity = 108/272 (39.71%), Postives = 163/272 (59.93%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEY-WL 61
           AW++ C     + + +P+G +LV  ++ +GPC G + L+++GN  AP      K    W+
Sbjct: 93  AWKEACA--AGSTITVPKGEYLVESLEFKGPCKGPVTLELNGNFKAPATVKTTKPHAGWI 152

Query: 62  ALHQVNNLIVDGQGG-FDGQGSSAWGYRG-------HDRPITLKFTAINNATIRNIKSVD 121
               + +  ++G    FDGQGS AW           +  PI ++FT + N+ I +I S +
Sbjct: 153 DFENLADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLPINIRFTGLTNSKINSITSTN 212

Query: 122 SKFFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHG 181
           SK FH  +   +N+T  ++ + AP  S NTDGIHI +S  +N+  + + TGDDC+S+G G
Sbjct: 213 SKLFHMNILNCKNITLTDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDG 272

Query: 182 SQNINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSI 241
           ++N+ + NV+CGPGHGISIGSLG+ P E  V  +TVR  + KNT NGVRIK+W    P I
Sbjct: 273 TENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGI 332

Query: 242 VTKVSFIHLQMENVENPIIIDQNYCP--HCSS 263
            + + F  + M+NV  P++IDQ YCP  HC +
Sbjct: 333 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKA 362

[Close]
BLAST of Lsi04G006260 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 221.9 bits (564), Expect = 4.9e-58
Identity = 108/278 (38.85%), Postives = 165/278 (59.35%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEY-WL 61
           AW++ C     + + +P+G ++V  ++ +GPC G + L+++GN  AP      K    W+
Sbjct: 92  AWKEACA--AGSTITVPKGEYMVESLEFKGPCKGPVTLELNGNFKAPATVKTTKPHAGWI 151

Query: 62  ALHQVNNLIVDGQGG-FDGQGSSAWGYRG-------HDRPITLKFTAINNATIRNIKSVD 121
               + +  ++G    FDGQGS AW           +  PI ++FT + N+ I +I S +
Sbjct: 152 DFENIADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLPINIRFTGLTNSKINSITSTN 211

Query: 122 SKFFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHG 181
           SK FH  +   +N+T  ++ + AP  S NTDGIHI +S  +N+  + + TGDDC+S+G G
Sbjct: 212 SKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDG 271

Query: 182 SQNINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSI 241
           ++N+ + NV+CGPGHGISIGSLG+ P E  V  +TVR  + KNT NGVRIK+W    P I
Sbjct: 272 TENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGI 331

Query: 242 VTKVSFIHLQMENVENPIIIDQNYCP--HCSSNHQHQL 269
            + + F  + M+NV  P++IDQ YCP  HC +    Q+
Sbjct: 332 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQV 367

[Close]
BLAST of Lsi04G006260 vs. NCBI nr
Match: gi|700200928|gb|KGN56061.1| (hypothetical protein Csa_3G063610 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 8.6e-89
Identity = 155/258 (60.08%), Postives = 201/258 (77.91%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIP-QGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWL 61
           AW + C  +G  +VLIP +G FLV P+ L+GPCHG I++Q+DG +LAP D+ F  G+YWL
Sbjct: 20  AWSEACTNNGGGIVLIPAKGRFLVLPLLLQGPCHGFIRIQLDGELLAPLDEHFATGDYWL 79

Query: 62  ALHQVNNLIVDGQGGFDGQGSSAWGYRGHDRPITLKFTAINNATIRNIKSVDSKFFHFAV 121
           ++ QVNNL +DG G  DG+GS+AW    H+RP++++   INNA I NIKS +SK FHFA+
Sbjct: 80  SIDQVNNLFIDGLGSLDGRGSTAWPSTSHNRPVSMRLNGINNARITNIKSYNSKLFHFAM 139

Query: 122 HESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQNINITN 181
           H   ++TFD+VT+IAP NS NTDGIHIS S+ INI +S + TGDDCIS+G GS+ INITN
Sbjct: 140 HGCRDVTFDHVTVIAPANSPNTDGIHISSSSGINIMHSTIGTGDDCISLGPGSKFINITN 199

Query: 182 VQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVTKVSFIH 241
           +QCGPGHGISIGSLG+ P E +V ++TVR S F  T NGVRIK+WS+   S+V+KV+F++
Sbjct: 200 IQCGPGHGISIGSLGKYPNEEDVFEVTVRDSTFIGTSNGVRIKTWSSSYSSMVSKVTFLN 259

Query: 242 LQMENVENPIIIDQNYCP 259
           LQM NV+NPIIIDQNYCP
Sbjct: 260 LQMNNVKNPIIIDQNYCP 277

[Close]
BLAST of Lsi04G006260 vs. NCBI nr
Match: gi|778688362|ref|XP_011652730.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 8.6e-89
Identity = 155/258 (60.08%), Postives = 201/258 (77.91%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIP-QGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWL 61
           AW + C  +G  +VLIP +G FLV P+ L+GPCHG I++Q+DG +LAP D+ F  G+YWL
Sbjct: 20  AWSEACTNNGGGIVLIPAKGRFLVLPLLLQGPCHGFIRIQLDGELLAPLDEHFATGDYWL 79

Query: 62  ALHQVNNLIVDGQGGFDGQGSSAWGYRGHDRPITLKFTAINNATIRNIKSVDSKFFHFAV 121
           ++ QVNNL +DG G  DG+GS+AW    H+RP++++   INNA I NIKS +SK FHFA+
Sbjct: 80  SIDQVNNLFIDGLGSLDGRGSTAWPSTSHNRPVSMRLNGINNARITNIKSYNSKLFHFAM 139

Query: 122 HESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQNINITN 181
           H   ++TFD+VT+IAP NS NTDGIHIS S+ INI +S + TGDDCIS+G GS+ INITN
Sbjct: 140 HGCRDVTFDHVTVIAPANSPNTDGIHISSSSGINIMHSTIGTGDDCISLGPGSKFINITN 199

Query: 182 VQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVTKVSFIH 241
           +QCGPGHGISIGSLG+ P E +V ++TVR S F  T NGVRIK+WS+   S+V+KV+F++
Sbjct: 200 IQCGPGHGISIGSLGKYPNEEDVFEVTVRDSTFIGTSNGVRIKTWSSSYSSMVSKVTFLN 259

Query: 242 LQMENVENPIIIDQNYCP 259
           LQM NV+NPIIIDQNYCP
Sbjct: 260 LQMNNVKNPIIIDQNYCP 277

[Close]
BLAST of Lsi04G006260 vs. NCBI nr
Match: gi|449463753|ref|XP_004149596.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 1.1e-88
Identity = 159/268 (59.33%), Postives = 203/268 (75.75%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIP-QGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWL 61
           AW   CG +G  VVLIP QG FLV P+ L+GPCHG I++Q+DG +LA  DK F  G++WL
Sbjct: 10  AWSGACGNNGGGVVLIPAQGKFLVLPLLLQGPCHGVIRIQLDGELLASSDKQFAIGDHWL 69

Query: 62  ALHQVNNLIVDGQGGFDGQGSSAWGYRGHDRPITLKFTAINNATIRNIKSVDSKFFHFAV 121
           ++  VNNL +DG G   G G+SAW     +RPI++KF  +N A+I+NI S DSKFFHFAV
Sbjct: 70  SIENVNNLFIDGLGRLTGSGASAWPSNSLNRPISMKFNNVNTASIKNISSFDSKFFHFAV 129

Query: 122 HESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQNINITN 181
           H S ++TFDNVT++AP NS NTDGIHIS S+ INI +S + TGDDCIS+G GS+ INI+N
Sbjct: 130 HASRDVTFDNVTVVAPANSPNTDGIHISTSSGINIMHSTIGTGDDCISLGPGSKMINISN 189

Query: 182 VQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVTKVSFIH 241
           V CGPGHGISIGSLG++P E +V  +TVR S F  T NG RIKSWS+P  S+V+KV+F++
Sbjct: 190 VHCGPGHGISIGSLGKNPNEEDVFDVTVRDSTFIGTSNGARIKSWSSPYSSMVSKVTFLN 249

Query: 242 LQMENVENPIIIDQNYCP-HCSSNHQHQ 268
           LQM NV+NPIIIDQ+YCP  C+ N  ++
Sbjct: 250 LQMNNVKNPIIIDQSYCPDSCAPNKMNK 277

[Close]
BLAST of Lsi04G006260 vs. NCBI nr
Match: gi|659096624|ref|XP_008449197.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 322.8 bits (826), Expect = 5.8e-85
Identity = 156/269 (57.99%), Postives = 203/269 (75.46%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQ-GTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWL 61
           AW + C  +G  VVLIP  G FLV P+ L+GPCHG I +Q+DG +LAP ++    G+YWL
Sbjct: 20  AWSEACTNNGGGVVLIPALGRFLVLPLLLQGPCHGFIHIQLDGELLAPLNEN--TGDYWL 79

Query: 62  ALHQVNNLIVDGQGGFDGQGSSAWGYRGHDRPITLKFTAINNATIRNIKSVDSKFFHFAV 121
           ++ +VNNL +DG G  +G+GS+AW    H+RPI++K T INNA I NIKS +SK FHFAV
Sbjct: 80  SIDKVNNLFIDGLGRLNGRGSTAWPSASHNRPISMKLTGINNARISNIKSYNSKLFHFAV 139

Query: 122 HESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQNINITN 181
           H   ++TFD+VT+IAP NS NTDGIH+S S+ INI +S + TGDDCIS+G GS+ INITN
Sbjct: 140 HGCRDVTFDHVTVIAPANSPNTDGIHVSLSSGINIMHSTIGTGDDCISLGPGSKFINITN 199

Query: 182 VQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVTKVSFIH 241
           VQCGPGHGISIGSLG+ P E +V ++TVR S F  T NG RIK+WS+   ++V+KV+F++
Sbjct: 200 VQCGPGHGISIGSLGKYPNEEDVFEVTVRDSTFLGTTNGARIKTWSSSYSNMVSKVTFLN 259

Query: 242 LQMENVENPIIIDQNYCPH-CSSNHQHQL 269
           LQM NV+NPIIIDQ+YCPH C    Q ++
Sbjct: 260 LQMNNVKNPIIIDQSYCPHSCGRQSQSKV 286

[Close]
BLAST of Lsi04G006260 vs. NCBI nr
Match: gi|590606088|ref|XP_007020651.1| (Pectin lyase-like superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 266.5 bits (680), Expect = 4.9e-68
Identity = 127/264 (48.11%), Postives = 173/264 (65.53%), Query Frame = 1 

Query: 2   AWEKGCGYDGSAVVLIPQGTFLVFPMKLEGPCHGSIKLQIDGNVLAPHDKLFIKGEYWLA 61
           AW++ C   G++VVLIP GT+LV P   +GPC G+I  Q+ G + AP D   +  ++W++
Sbjct: 56  AWKQACQSGGNSVVLIPLGTYLVLPTVFQGPCKGAIAFQVKGLLRAPTDAASLHLDHWIS 115

Query: 62  LHQVNNLIVDGQGGFDGQGSSAWGYRG-------HDRPITLKFTAINNATIRNIKSVDSK 121
              ++ L + G G  DGQG+SAW Y            P+TL+F  + N+ I +I S++SK
Sbjct: 116 FRYIDRLTITGGGSLDGQGASAWPYNTCLTDPNCPPFPVTLRFDFVTNSWINHITSINSK 175

Query: 122 FFHFAVHESENMTFDNVTLIAPKNSSNTDGIHISKSTNINIFNSVMSTGDDCISMGHGSQ 181
            FHF +  S N+    V + AP +S NTDGIHI  ST I+I +S ++TGDDC+SMG GSQ
Sbjct: 176 NFHFNIFASTNIRIHQVNISAPGDSPNTDGIHIGDSTGIHISDSEIATGDDCVSMGPGSQ 235

Query: 182 NINITNVQCGPGHGISIGSLGQDPKELNVTKITVRHSIFKNTKNGVRIKSWSTPNPSIVT 241
           NINITNV CGPGHG S+GSLG+ P E +V  +TVR+     T NG+RIK+WS  + S  +
Sbjct: 236 NINITNVHCGPGHGFSVGSLGKSPNEKDVAGVTVRNCTLTGTLNGLRIKTWSPSHSSRCS 295

Query: 242 KVSFIHLQMENVENPIIIDQNYCP 259
            V+F H+ +ENV NPI IDQNYCP
Sbjct: 296 DVTFEHVNVENVNNPIFIDQNYCP 319

The following BLAST results are available for this feature:
BLAST of Lsi04G006260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR2_PLAAC3.3e-6444.85Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
PGLR_TOBAC8.9e-6242.86Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1[more]
PGLR_OENOR2.2e-6043.61Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR_MEDSA2.4e-5941.84Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR2_MAIZE1.0e-5741.39Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
BLAST of Lsi04G006260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7H9_CUCSA6.0e-8960.08Uncharacterized protein OS=Cucumis sativus GN=Csa_3G063610 PE=3 SV=1[more]
A0A061F588_THECC3.4e-6848.11Pectin lyase-like superfamily protein, putative OS=Theobroma cacao GN=TCM_030754... [more]
A9YUH5_PLAOI1.3e-6446.24Pollen allergen Pla o 2 OS=Platanus orientalis PE=2 SV=1[more]
A0A059CRS9_EUCGR3.0e-6444.53Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02249 PE=3 SV=1[more]
D7T9Y0_VITVI5.1e-6444.61Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00340 PE=3 SV=... [more]
BLAST of Lsi04G006260 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G17150.17.5e-5943.54 Pectin lyase-like superfamily protein[more]
AT1G65570.13.7e-5842.96 Pectin lyase-like superfamily protein[more]
AT1G05660.13.7e-5842.59 Pectin lyase-like superfamily protein[more]
AT3G14040.14.9e-5839.71 Pectin lyase-like superfamily protein[more]
AT3G07850.14.9e-5838.85 Pectin lyase-like superfamily protein[more]
BLAST of Lsi04G006260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200928|gb|KGN56061.1|8.6e-8960.08hypothetical protein Csa_3G063610 [Cucumis sativus][more]
gi|778688362|ref|XP_011652730.1|8.6e-8960.08PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|449463753|ref|XP_004149596.1|1.1e-8859.33PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|659096624|ref|XP_008449197.1|5.8e-8557.99PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|590606088|ref|XP_007020651.1|4.9e-6848.11Pectin lyase-like superfamily protein, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR006626PbH1
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0045490 pectin catabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
cellular_component GO:0019814 immunoglobulin complex
molecular_function GO:0047911 galacturan 1,4-alpha-galacturonidase activity
molecular_function GO:0019863 IgE binding
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G006260.1Lsi04G006260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 7..265
score: 1.8
IPR000743Glycoside hydrolase, family 28PROSITEPS00502POLYGALACTURONASEcoord: 180..193
scor
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 203..224
score: 37.0coord: 173..193
score: 2400.0coord: 150..171
score: 2600.0coord: 123..149
score: 2
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 2..261
score: 6.14
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 2..263
score: 7.3
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 2..259
score: 5.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G006260Cla010017Watermelon (97103) v1lsiwmB312
Lsi04G006260ClCG05G026030Watermelon (Charleston Gray)lsiwcgB283
Lsi04G006260Cla97C05G108250Watermelon (97103) v2lsiwmbB284
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G006260Cucurbita pepo (Zucchini)cpelsiB030
Lsi04G006260Cucurbita pepo (Zucchini)cpelsiB353
Lsi04G006260Wild cucumber (PI 183967)cpilsiB116
Lsi04G006260Wild cucumber (PI 183967)cpilsiB372
Lsi04G006260Cucumber (Chinese Long) v2culsiB119
Lsi04G006260Cucumber (Chinese Long) v2culsiB368
Lsi04G006260Melon (DHL92) v3.5.1lsimeB281
Lsi04G006260Melon (DHL92) v3.5.1lsimeB289
Lsi04G006260Melon (DHL92) v3.5.1lsimeB303
Lsi04G006260Watermelon (Charleston Gray)lsiwcgB308
Lsi04G006260Watermelon (97103) v1lsiwmB296
Lsi04G006260Cucumber (Gy14) v2cgyblsiB105
Lsi04G006260Cucumber (Gy14) v2cgyblsiB337
Lsi04G006260Melon (DHL92) v3.6.1lsimedB297
Lsi04G006260Melon (DHL92) v3.6.1lsimedB317
Lsi04G006260Silver-seed gourdcarlsiB218
Lsi04G006260Silver-seed gourdcarlsiB453
Lsi04G006260Cucumber (Chinese Long) v3cuclsiB131
Lsi04G006260Cucumber (Chinese Long) v3cuclsiB393
Lsi04G006260Watermelon (97103) v2lsiwmbB305
Lsi04G006260Wax gourdlsiwgoB380
Lsi04G006260Bottle gourd (USVL1VR-Ls)lsilsiB149
Lsi04G006260Cucumber (Gy14) v1cgylsiB465
Lsi04G006260Cucumber (Gy14) v1cgylsiB636
Lsi04G006260Cucurbita maxima (Rimu)cmalsiB383
Lsi04G006260Cucurbita maxima (Rimu)cmalsiB670
Lsi04G006260Cucurbita maxima (Rimu)cmalsiB726
Lsi04G006260Cucurbita moschata (Rifu)cmolsiB368
Lsi04G006260Cucurbita moschata (Rifu)cmolsiB661
Lsi04G006260Cucurbita moschata (Rifu)cmolsiB716