Lsi04G004770 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G004770
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr04 : 4454209 .. 4454418 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGTGAGGCTCAAAGCAAAGCTTCAAGCTCTCCCAGCAATAACTTACCGTGCTTCACCAAAGATGCTAATCCTAAACTTTCCATTTCCCTTCACAACAAATCTAAAAGAGAGCCTGGAGGATGGAAGAGCATGCCTTACATCCTTGGTCTCTTCTTCTTCTTCTTCTTCTGTTTCATTTCATTTTCAGGGGCTGGATATGTATAA

mRNA sequence

ATGGAGGGTGAGGCTCAAAGCAAAGCTTCAAGCTCTCCCAGCAATAACTTACCGTGCTTCACCAAAGATGCTAATCCTAAACTTTCCATTTCCCTTCACAACAAATCTAAAAGAGAGCCTGGAGGATGGAAGAGCATGCCTTACATCCTTGGTCTCTTCTTCTTCTTCTTCTTCTGTTTCATTTCATTTTCAGGGGCTGGATATGTATAA

Coding sequence (CDS)

ATGGAGGGTGAGGCTCAAAGCAAAGCTTCAAGCTCTCCCAGCAATAACTTACCGTGCTTCACCAAAGATGCTAATCCTAAACTTTCCATTTCCCTTCACAACAAATCTAAAAGAGAGCCTGGAGGATGGAAGAGCATGCCTTACATCCTTGGTCTCTTCTTCTTCTTCTTCTTCTGTTTCATTTCATTTTCAGGGGCTGGATATGTATAA

Protein sequence

MEGEAQSKASSSPSNNLPCFTKDANPKLSISLHNKSKREPGGWKSMPYILGLFFFFFFCFISFSGAGYV
Homology
[Close]
BLAST of Lsi04G004770 vs. TrEMBL
Match: A0A0A0KTW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604170 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-06
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 1  MEGEAQSKASSSPSNNLPCFTKDAN--PKLSISLHNKSKREPGGWKSMPYILG 52
          ME E++ KASS+  +  P  +KDAN  PKLSI + NKSKREPGGWKSMPYILG
Sbjct: 1  MESESERKASSNSRS--PNNSKDANNNPKLSI-ISNKSKREPGGWKSMPYILG 50

[Close]
BLAST of Lsi04G004770 vs. NCBI nr
Match: gi|449434837|ref|XP_004135202.1| (PREDICTED: protein NRT1/ PTR FAMILY 2.13-like [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 1  MEGEAQSKASSSPSNNLPCFTKDAN--PKLSISLHNKSKREPGGWKSMPYILG 52
          ME E++ KASS+  +  P  +KDAN  PKLSI + NKSKREPGGWKSMPYILG
Sbjct: 1  MESESERKASSNSRS--PNNSKDANNNPKLSI-ISNKSKREPGGWKSMPYILG 50

[Close]
BLAST of Lsi04G004770 vs. NCBI nr
Match: gi|659090965|ref|XP_008446297.1| (PREDICTED: LOW QUALITY PROTEIN: protein NRT1/ PTR FAMILY 2.13-like [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 6.8e-06
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 1  MEGEAQSKASSSPSNNLPCFTKDAN---PKLSISLHNKSKREPGGWKSMPYILG 52
          ME E++ K SS+  ++ P   KDAN   PKLSIS  NKSKREPGGWKSMPYILG
Sbjct: 1  MESESEKKGSSN--SHSPNNFKDANNNNPKLSIS--NKSKREPGGWKSMPYILG 50

The following BLAST results are available for this feature:
BLAST of Lsi04G004770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G004770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTW3_CUCSA1.6e-0666.04Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604170 PE=3 SV=1[more]
BLAST of Lsi04G004770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G004770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434837|ref|XP_004135202.1|2.3e-0666.04PREDICTED: protein NRT1/ PTR FAMILY 2.13-like [Cucumis sativus][more]
gi|659090965|ref|XP_008446297.1|6.8e-0664.81PREDICTED: LOW QUALITY PROTEIN: protein NRT1/ PTR FAMILY 2.13-like [Cucumis melo... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006857 oligopeptide transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0022857 transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G004770.1Lsi04G004770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G004770Cla97C05G106790Watermelon (97103) v2lsiwmbB284
Lsi04G004770Bhi07G001322Wax gourdlsiwgoB380
Lsi04G004770Carg17237Silver-seed gourdcarlsiB091
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G004770Cucumber (Gy14) v2cgyblsiB337
Lsi04G004770Melon (DHL92) v3.6.1lsimedB297
Lsi04G004770Melon (DHL92) v3.6.1lsimedB303
Lsi04G004770Melon (DHL92) v3.6.1lsimedB308
Lsi04G004770Silver-seed gourdcarlsiB764
Lsi04G004770Cucumber (Chinese Long) v3cuclsiB061
Lsi04G004770Cucumber (Chinese Long) v3cuclsiB057
Lsi04G004770Cucumber (Chinese Long) v3cuclsiB393
Lsi04G004770Watermelon (97103) v2lsiwmbB261
Lsi04G004770Wax gourdlsiwgoB377
Lsi04G004770Wax gourdlsiwgoB408
Lsi04G004770Bottle gourd (USVL1VR-Ls)lsilsiB097
Lsi04G004770Bottle gourd (USVL1VR-Ls)lsilsiB139
Lsi04G004770Cucumber (Gy14) v1cgylsiB119
Lsi04G004770Cucumber (Gy14) v1cgylsiB465
Lsi04G004770Cucurbita maxima (Rimu)cmalsiB379
Lsi04G004770Cucurbita maxima (Rimu)cmalsiB678
Lsi04G004770Cucurbita moschata (Rifu)cmolsiB364
Lsi04G004770Cucurbita moschata (Rifu)cmolsiB671
Lsi04G004770Cucurbita pepo (Zucchini)cpelsiB032
Lsi04G004770Cucurbita pepo (Zucchini)cpelsiB360
Lsi04G004770Wild cucumber (PI 183967)cpilsiB050
Lsi04G004770Wild cucumber (PI 183967)cpilsiB372
Lsi04G004770Cucumber (Chinese Long) v2culsiB051
Lsi04G004770Cucumber (Chinese Long) v2culsiB368
Lsi04G004770Melon (DHL92) v3.5.1lsimeB281
Lsi04G004770Melon (DHL92) v3.5.1lsimeB289
Lsi04G004770Watermelon (Charleston Gray)lsiwcgB274
Lsi04G004770Watermelon (Charleston Gray)lsiwcgB283
Lsi04G004770Watermelon (Charleston Gray)lsiwcgB304
Lsi04G004770Watermelon (97103) v1lsiwmB312
Lsi04G004770Watermelon (97103) v1lsiwmB323