Lsi04G004620 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G004620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Pentatricopeptide repeat-containing-like protein
Location	chr04 : 4392691 .. 4393116 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGTTATGGTCAGAAGTGCCTTAAACTCGTTTCACTTATGAAACGAGAAGGAATTGTGCCTAATGAAGTCACATTCATTTATGTTCTTAGAGGTTGTAGTGTGGTCGGATTCTTCGATGAAGGTCGTTCACATTTTGACTCAATGAAAAGAGACCATGGCATTCAACCGCAGCTTGAGCACTATGGTTGTATGGTTGATTTATATAGTCGAGTAGGGCAATTAGATGAGGCTCTAAACTTCATCAACACCATGCCTCTTAAGCCACACGCGGGGGCTTGGGGAGCTTTGCTCAATGCCTGTAGAATGTACAAGAATATGGAGTTGGGCAAGTTTGCCTCGAGAAAACTGGTAGAGCTTGAAGCCAAGAATCACAGCGCCTACGTGCTATTATCAAACATCTACGCCGACACAAAGAACTAG

mRNA sequence

ATGAATGGTTATGGTCAGAAGTGCCTTAAACTCGTTTCACTTATGAAACGAGAAGGAATTGTGCCTAATGAAGTCACATTCATTTATGTTCTTAGAGGTTGTAGTGTGGTCGGATTCTTCGATGAAGGTCGTTCACATTTTGACTCAATGAAAAGAGACCATGGCATTCAACCGCAGCTTGAGCACTATGGTTGTATGGTTGATTTATATAGTCGAGTAGGGCAATTAGATGAGGCTCTAAACTTCATCAACACCATGCCTCTTAAGCCACACGCGGGGGCTTGGGGAGCTTTGCTCAATGCCTGTAGAATGTACAAGAATATGGAGTTGGGCAAGTTTGCCTCGAGAAAACTGGTAGAGCTTGAAGCCAAGAATCACAGCGCCTACGTGCTATTATCAAACATCTACGCCGACACAAAGAACTAG

Coding sequence (CDS)

ATGAATGGTTATGGTCAGAAGTGCCTTAAACTCGTTTCACTTATGAAACGAGAAGGAATTGTGCCTAATGAAGTCACATTCATTTATGTTCTTAGAGGTTGTAGTGTGGTCGGATTCTTCGATGAAGGTCGTTCACATTTTGACTCAATGAAAAGAGACCATGGCATTCAACCGCAGCTTGAGCACTATGGTTGTATGGTTGATTTATATAGTCGAGTAGGGCAATTAGATGAGGCTCTAAACTTCATCAACACCATGCCTCTTAAGCCACACGCGGGGGCTTGGGGAGCTTTGCTCAATGCCTGTAGAATGTACAAGAATATGGAGTTGGGCAAGTTTGCCTCGAGAAAACTGGTAGAGCTTGAAGCCAAGAATCACAGCGCCTACGTGCTATTATCAAACATCTACGCCGACACAAAGAACTAG

Protein sequence

MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQLEHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVELEAKNHSAYVLLSNIYADTKN

Homology

[Close]

BLAST of Lsi04G004620 vs. Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.7e-54
Identity = 92/141 (65.25%), Postives = 119/141 (84.40%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNG+G+KCL+L SLMK++G+ PN VTF+ VLRGCSVVGF DEG+ HFDSM+ + GI+PQL
Sbjct: 318 MNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQL 377

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGC+VDLY+R G+L++A++ I  MP+KPHA  W +LL+A RMYKN+ELG  AS+K++E
Sbjct: 378 EHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE 437

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LE  NH AYVLLSNIYAD+ +
Sbjct: 438 LETANHGAYVLLSNIYADSND 458

[Close]

BLAST of Lsi04G004620 vs. Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 3.7e-35
Identity = 68/136 (50.00%), Postives = 96/136 (70.59%), Query Frame = 1


Query: 2   NGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQLE 61
           +G+G+K + L   M  EG+ P+ +TF+ +L  CS  G  DEG+  F+ M+ D+GI P L+
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589

Query: 62  HYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVEL 121
           HYGCMVD+Y R GQL+ AL FI +M L+P A  WGALL+ACR++ N++LGK AS  L E+
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649

Query: 122 EAKNHSAYVLLSNIYA 138
           E ++   +VLLSN+YA
Sbjct: 650 EPEHVGYHVLLSNMYA 665

[Close]

BLAST of Lsi04G004620 vs. Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.4e-34
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           +NG  ++ L     MK + +VPN VTF+ +L  CS  G   EG   F+SM RD+G+ P+ 
Sbjct: 390 INGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEE 449

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHY CMVDL  R G++ EA +FI+ MP+KP A AWGALL+ACR++K ++L    + KL+ 
Sbjct: 450 EHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLS 509

Query: 121 LEAKNHSAYVLLSNIYAD 139
           +E +  S YVLLSNIYAD
Sbjct: 510 MEPEKSSVYVLLSNIYAD 527

[Close]

BLAST of Lsi04G004620 vs. Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.1e-34
Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 1


Query: 2   NGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQLE 61
           +G+  + L+  + M  EG+ PNEVT++ +L  CS VG   EG  HF+SM  DH I+P++E
Sbjct: 553 HGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKME 612

Query: 62  HYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVEL 121
           HY CMVDL  R G L +A  FINTMP +     W   L ACR++ N ELGK A+RK++EL
Sbjct: 613 HYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEL 672

Query: 122 EAKNHSAYVLLSNIYA 138
           +    +AY+ LSNIYA
Sbjct: 673 DPNEPAAYIQLSNIYA 688

[Close]

BLAST of Lsi04G004620 vs. Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-33
Identity = 67/137 (48.91%), Postives = 94/137 (68.61%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           M+G     L L + MK+E + PNEVTF+ VL GCS  G  +EG+  F SM  ++ I P+L
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDL+ R   L EAL  I +MP+  +   WG+L++ACR++  +ELGKFA+++++E
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILE 541

Query: 121 LEAKNHSAYVLLSNIYA 138
           LE  +  A VL+SNIYA
Sbjct: 542 LEPDHDGALVLMSNIYA 558

[Close]

BLAST of Lsi04G004620 vs. TrEMBL
Match: A0A0A0KSJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604190 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.7e-66
Identity = 119/141 (84.40%), Postives = 129/141 (91.49%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L S MK EGI PNE+TFI VL+GCSVVGF DEGRSHFDSMKRDHGI+P+L
Sbjct: 241 MNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRL 300

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+L+EALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKL+E
Sbjct: 301 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 360

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           +E KNH AYV LSNIYADT N
Sbjct: 361 VEGKNHGAYVSLSNIYADTGN 381

[Close]

BLAST of Lsi04G004620 vs. TrEMBL
Match: M5XCT1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003120mg PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.6e-59
Identity = 106/140 (75.71%), Postives = 126/140 (90.00%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNG+G+KCL+L  LM +EG+ PNEVTF+ VLRGC+VVG  +EGR HFDSMK+ +GI+PQL
Sbjct: 307 MNGFGEKCLELFCLMNKEGVHPNEVTFVSVLRGCTVVGLVEEGRQHFDSMKKLYGIEPQL 366

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGC+VDLY R G+LDEALNFIN+MP+KPHAGAWGALLNA RMYKNME+G+ ASRK+V+
Sbjct: 367 EHYGCIVDLYGRAGRLDEALNFINSMPMKPHAGAWGALLNASRMYKNMEIGELASRKIVK 426

Query: 121 LEAKNHSAYVLLSNIYADTK 141
           LEAKNH AYVLLSNIYAD+K
Sbjct: 427 LEAKNHGAYVLLSNIYADSK 446

[Close]

BLAST of Lsi04G004620 vs. TrEMBL
Match: F6HPF7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01560 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-57
Identity = 101/141 (71.63%), Postives = 125/141 (88.65%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNG G+KCL+L SLMK++ + PNE+TF+ VLRGCSVVG  +EGR HF+SM + +GI+P+L
Sbjct: 307 MNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRL 366

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G LDEALNFIN+MP++PH GAWGALLNAC++Y+NME+G+ ASRK+VE
Sbjct: 367 EHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVE 426

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LEAKNH AYVLLSNIYAD+K+
Sbjct: 427 LEAKNHGAYVLLSNIYADSKD 447

[Close]

BLAST of Lsi04G004620 vs. TrEMBL
Match: V4SVA4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030908mg PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.1e-57
Identity = 104/141 (73.76%), Postives = 122/141 (86.52%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNG G+K L+L SLMK+ G+ PNEVTF+ VLRGC VVG  +EGR HFDSM+R++GI+P L
Sbjct: 367 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 426

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGC+VDLY R G+LDEAL+ IN MP+KPHAGAWGALLNACRMYKN E+G+ ASRKLVE
Sbjct: 427 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 486

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LE KNH AYVLLSNIYA++KN
Sbjct: 487 LETKNHGAYVLLSNIYAESKN 507

[Close]

BLAST of Lsi04G004620 vs. TrEMBL
Match: A0A067H5C2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012539mg PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.1e-57
Identity = 104/141 (73.76%), Postives = 122/141 (86.52%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNG G+K L+L SLMK+ G+ PNEVTF+ VLRGC VVG  +EGR HFDSM+R++GI+P L
Sbjct: 167 MNGAGEKSLELFSLMKQAGVRPNEVTFVSVLRGCCVVGLVEEGREHFDSMRREYGIEPWL 226

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGC+VDLY R G+LDEAL+ IN MP+KPHAGAWGALLNACRMYKN E+G+ ASRKLVE
Sbjct: 227 EHYGCLVDLYGRAGRLDEALDVINKMPMKPHAGAWGALLNACRMYKNTEMGELASRKLVE 286

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LE KNH AYVLLSNIYA++KN
Sbjct: 287 LETKNHGAYVLLSNIYAESKN 307

[Close]

BLAST of Lsi04G004620 vs. TAIR10
Match: AT5G40405.1 (AT5G40405.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 211.8 bits (538), Expect = 2.6e-55
Identity = 92/141 (65.25%), Postives = 119/141 (84.40%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNG+G+KCL+L SLMK++G+ PN VTF+ VLRGCSVVGF DEG+ HFDSM+ + GI+PQL
Sbjct: 318 MNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQL 377

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGC+VDLY+R G+L++A++ I  MP+KPHA  W +LL+A RMYKN+ELG  AS+K++E
Sbjct: 378 EHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE 437

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LE  NH AYVLLSNIYAD+ +
Sbjct: 438 LETANHGAYVLLSNIYADSND 458

[Close]

BLAST of Lsi04G004620 vs. TAIR10
Match: AT4G33990.1 (AT4G33990.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-36
Identity = 68/136 (50.00%), Postives = 96/136 (70.59%), Query Frame = 1


Query: 2   NGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQLE 61
           +G+G+K + L   M  EG+ P+ +TF+ +L  CS  G  DEG+  F+ M+ D+GI P L+
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589

Query: 62  HYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVEL 121
           HYGCMVD+Y R GQL+ AL FI +M L+P A  WGALL+ACR++ N++LGK AS  L E+
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649

Query: 122 EAKNHSAYVLLSNIYA 138
           E ++   +VLLSN+YA
Sbjct: 650 EPEHVGYHVLLSNMYA 665

[Close]

BLAST of Lsi04G004620 vs. TAIR10
Match: AT1G06140.1 (AT1G06140.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-35
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           +NG  ++ L     MK + +VPN VTF+ +L  CS  G   EG   F+SM RD+G+ P+ 
Sbjct: 390 INGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEE 449

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHY CMVDL  R G++ EA +FI+ MP+KP A AWGALL+ACR++K ++L    + KL+ 
Sbjct: 450 EHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLS 509

Query: 121 LEAKNHSAYVLLSNIYAD 139
           +E +  S YVLLSNIYAD
Sbjct: 510 MEPEKSSVYVLLSNIYAD 527

[Close]

BLAST of Lsi04G004620 vs. TAIR10
Match: AT3G49170.1 (AT3G49170.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 144.8 bits (364), Expect = 4.0e-35
Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 1


Query: 2   NGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQLE 61
           +G+  + L+  + M  EG+ PNEVT++ +L  CS VG   EG  HF+SM  DH I+P++E
Sbjct: 553 HGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKME 612

Query: 62  HYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVEL 121
           HY CMVDL  R G L +A  FINTMP +     W   L ACR++ N ELGK A+RK++EL
Sbjct: 613 HYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEL 672

Query: 122 EAKNHSAYVLLSNIYA 138
           +    +AY+ LSNIYA
Sbjct: 673 DPNEPAAYIQLSNIYA 688

[Close]

BLAST of Lsi04G004620 vs. TAIR10
Match: AT4G14820.1 (AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-34
Identity = 67/137 (48.91%), Postives = 94/137 (68.61%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           M+G     L L + MK+E + PNEVTF+ VL GCS  G  +EG+  F SM  ++ I P+L
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDL+ R   L EAL  I +MP+  +   WG+L++ACR++  +ELGKFA+++++E
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILE 541

Query: 121 LEAKNHSAYVLLSNIYA 138
           LE  +  A VL+SNIYA
Sbjct: 542 LEPDHDGALVLMSNIYA 558

[Close]

BLAST of Lsi04G004620 vs. NCBI nr
Match: gi|659090971|ref|XP_008446300.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 2.8e-67
Identity = 121/141 (85.82%), Postives = 131/141 (92.91%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L SLMKREGI PNE+TFI VL+GCSVVGF DEGRSHFDSMKRDHGI+P+ 
Sbjct: 320 MNGYGQKCLELFSLMKREGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPKH 379

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+L+EALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKL+E
Sbjct: 380 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 439

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           +E KNH AYVLLSNIYADT N
Sbjct: 440 VEGKNHGAYVLLSNIYADTGN 460

[Close]

BLAST of Lsi04G004620 vs. NCBI nr
Match: gi|449435364|ref|XP_004135465.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 2.4e-66
Identity = 119/141 (84.40%), Postives = 129/141 (91.49%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L S MK EGI PNE+TFI VL+GCSVVGF DEGRSHFDSMKRDHGI+P+L
Sbjct: 320 MNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRL 379

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+L+EALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKL+E
Sbjct: 380 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 439

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           +E KNH AYV LSNIYADT N
Sbjct: 440 VEGKNHGAYVSLSNIYADTGN 460

[Close]

BLAST of Lsi04G004620 vs. NCBI nr
Match: gi|700196697|gb|KGN51874.1| (hypothetical protein Csa_5G604190 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 2.4e-66
Identity = 119/141 (84.40%), Postives = 129/141 (91.49%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L S MK EGI PNE+TFI VL+GCSVVGF DEGRSHFDSMKRDHGI+P+L
Sbjct: 241 MNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRL 300

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+L+EALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKL+E
Sbjct: 301 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 360

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           +E KNH AYV LSNIYADT N
Sbjct: 361 VEGKNHGAYVSLSNIYADTGN 381

[Close]

BLAST of Lsi04G004620 vs. NCBI nr
Match: gi|1009150314|ref|XP_015892954.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Ziziphus jujuba])

HSP 1 Score: 249.6 bits (636), Expect = 3.2e-63
Identity = 114/141 (80.85%), Postives = 130/141 (92.20%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNG+G+KCL+L SLMK++GI PNEVTF+ VLRGCSVVG  DEGR HFDSM+R +G++PQL
Sbjct: 321 MNGFGKKCLELFSLMKQDGIHPNEVTFVSVLRGCSVVGLVDEGREHFDSMRRVYGLEPQL 380

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLYSR G+LDEALNFIN+MP+KPHAGAWGALLNACRMYKN ELG+ ASRK+VE
Sbjct: 381 EHYGCMVDLYSRAGRLDEALNFINSMPIKPHAGAWGALLNACRMYKNRELGELASRKIVE 440

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LEAKNH AYVLLSNIYAD+KN
Sbjct: 441 LEAKNHGAYVLLSNIYADSKN 461

[Close]

BLAST of Lsi04G004620 vs. NCBI nr
Match: gi|645229921|ref|XP_008221687.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Prunus mume])

HSP 1 Score: 236.9 bits (603), Expect = 2.2e-59
Identity = 107/140 (76.43%), Postives = 125/140 (89.29%), Query Frame = 1


Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNG+G+KCL+L S M +EG+ PNEVTF+ VLRGC+VVG  +EGR HFDSMK+ +GI+PQL
Sbjct: 321 MNGFGEKCLELFSFMNKEGVHPNEVTFVSVLRGCTVVGLVEEGRQHFDSMKKLYGIEPQL 380

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGC+VDLY R G+LDEALNFIN MP+KPHAGAWGALLNA RMYKNME+G+ ASRK+VE
Sbjct: 381 EHYGCIVDLYGRAGRLDEALNFINGMPMKPHAGAWGALLNASRMYKNMEIGELASRKIVE 440

Query: 121 LEAKNHSAYVLLSNIYADTK 141
           LEAKNH AYVLLSNIYAD+K
Sbjct: 441 LEAKNHGAYVLLSNIYADSK 460

The following BLAST results are available for this feature:

BLAST of Lsi04G004620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP410_ARATH	4.7e-54	65.25	Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis th...	[more]
PP348_ARATH	3.7e-35	50.00	Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN...	[more]
PPR14_ARATH	2.4e-34	49.28	Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop...	[more]
PP272_ARATH	7.1e-34	48.53	Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop...	[more]
PP311_ARATH	2.1e-33	48.91	Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN...	[more]

BLAST of Lsi04G004620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSJ7_CUCSA	1.7e-66	84.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604190 PE=4 SV=1	[more]
M5XCT1_PRUPE	2.6e-59	75.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003120mg PE=4 SV=1	[more]
F6HPF7_VITVI	1.4e-57	71.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01560 PE=4 SV=...	[more]
V4SVA4_9ROSI	7.1e-57	73.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030908mg PE=4 SV=1	[more]
A0A067H5C2_CITSI	7.1e-57	73.76	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012539mg PE=4 SV=1	[more]

BLAST of Lsi04G004620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40405.1	2.6e-55	65.25	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G33990.1	2.1e-36	50.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G06140.1	1.4e-35	49.28	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G49170.1	4.0e-35	48.53	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G14820.1	1.2e-34	48.91	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Lsi04G004620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090971\|ref\|XP_008446300.1\|	2.8e-67	85.82	PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucum...	[more]
gi\|449435364\|ref\|XP_004135465.1\|	2.4e-66	84.40	PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucum...	[more]
gi\|700196697\|gb\|KGN51874.1\|	2.4e-66	84.40	hypothetical protein Csa_5G604190 [Cucumis sativus]	[more]
gi\|1009150314\|ref\|XP_015892954.1\|	3.2e-63	80.85	PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Zizip...	[more]
gi\|645229921\|ref\|XP_008221687.1\|	2.2e-59	76.43	PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Prunu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G004620.1	Lsi04G004620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 62..86 score: 0.0026coord: 25..53 score: 0
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 63..140 score: 8.
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..141 score: 1.0
None	No IPR available	PANTHER	PTHR24015:SF6	SUBFAMILY NOT NAMED	coord: 1..141 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G004620	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G004620	Melon (DHL92) v3.6.1	lsimedB303
Lsi04G004620	Melon (DHL92) v3.6.1	lsimedB308
Lsi04G004620	Silver-seed gourd	carlsiB091
Lsi04G004620	Silver-seed gourd	carlsiB764
Lsi04G004620	Cucumber (Chinese Long) v3	cuclsiB061
Lsi04G004620	Cucumber (Chinese Long) v3	cuclsiB057
Lsi04G004620	Cucumber (Chinese Long) v3	cuclsiB393
Lsi04G004620	Watermelon (97103) v2	lsiwmbB261
Lsi04G004620	Watermelon (97103) v2	lsiwmbB284
Lsi04G004620	Wax gourd	lsiwgoB377
Lsi04G004620	Wax gourd	lsiwgoB380
Lsi04G004620	Wax gourd	lsiwgoB408
Lsi04G004620	Bottle gourd (USVL1VR-Ls)	lsilsiB097
Lsi04G004620	Bottle gourd (USVL1VR-Ls)	lsilsiB139
Lsi04G004620	Cucumber (Gy14) v1	cgylsiB119
Lsi04G004620	Cucumber (Gy14) v1	cgylsiB465
Lsi04G004620	Cucurbita maxima (Rimu)	cmalsiB379
Lsi04G004620	Cucurbita maxima (Rimu)	cmalsiB678
Lsi04G004620	Cucurbita moschata (Rifu)	cmolsiB364
Lsi04G004620	Cucurbita moschata (Rifu)	cmolsiB671
Lsi04G004620	Cucurbita pepo (Zucchini)	cpelsiB032
Lsi04G004620	Cucurbita pepo (Zucchini)	cpelsiB360
Lsi04G004620	Wild cucumber (PI 183967)	cpilsiB050
Lsi04G004620	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G004620	Cucumber (Chinese Long) v2	culsiB051
Lsi04G004620	Cucumber (Chinese Long) v2	culsiB368
Lsi04G004620	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G004620	Melon (DHL92) v3.5.1	lsimeB289
Lsi04G004620	Watermelon (Charleston Gray)	lsiwcgB274
Lsi04G004620	Watermelon (Charleston Gray)	lsiwcgB283
Lsi04G004620	Watermelon (Charleston Gray)	lsiwcgB304
Lsi04G004620	Watermelon (97103) v1	lsiwmB312
Lsi04G004620	Watermelon (97103) v1	lsiwmB323
Lsi04G004620	Cucumber (Gy14) v2	cgyblsiB337