Lsi04G004530 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G004530
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr04 : 4315503 .. 4316134 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGGTACATTCCTCAATCTATATTTTGAAAGTAGCAGTAAGACACATAACATGGAATTATCTAGGGTCACTGGAAGGAACGGAGCCCAACGGTAGGATTTCAATATTGACTGAACCTGAAACATCAAAATCTTAGTGTTTAGTTCTTTCGAAACTGTTGCACATAACCTATTCTATTTTTGGGTAGGACTCTTATCATTTTTGTCTTGTGAACAATGACTATATGAGTACATGATACCAAGAAAATGACTACATATGATACGAAGTAGTAGTTTTGTTAATTTGAGCAATAAAGTTACCCTACTGGCATAGTTTAAGAGCCTACTGTTGTTGATTTGAATGGTTCTTCTTGCAGTAAGACTTTGTAAAAATCTTCTCCTAAATTATCAGCAGCTGTGGGAGCATCTTTACCGATTCCTTTGTCGATCGCAACTCCACCAGCCACAGCAGCTCCAACCGCCGCTGCAGCTATCCCTGCAACTGCAACCGGGCCTGTTGCCCCTAATGCCAATGCTCCAATAGCCCCAACTGCTCCTGCACCAACTCCAACTGCAGTAGCTGAACCAGCAGATAAAGCAGCTGCAGCAAGTTCTGCACTCTCCAACACCCACAAGATAATTGCCGAATAA

mRNA sequence

ATGACAGCAGCTGTGGGAGCATCTTTACCGATTCCTTTGTCGATCGCAACTCCACCAGCCACAGCAGCTCCAACCGCCGCTGCAGCTATCCCTGCAACTGCAACCGGGCCTGTTGCCCCTAATGCCAATGCTCCAATAGCCCCAACTGCTCCTGCACCAACTCCAACTGCAGTAGCTGAACCAGCAGATAAAGCAGCTGCAGCAAGTTCTGCACTCTCCAACACCCACAAGATAATTGCCGAATAA

Coding sequence (CDS)

ATGACAGCAGCTGTGGGAGCATCTTTACCGATTCCTTTGTCGATCGCAACTCCACCAGCCACAGCAGCTCCAACCGCCGCTGCAGCTATCCCTGCAACTGCAACCGGGCCTGTTGCCCCTAATGCCAATGCTCCAATAGCCCCAACTGCTCCTGCACCAACTCCAACTGCAGTAGCTGAACCAGCAGATAAAGCAGCTGCAGCAAGTTCTGCACTCTCCAACACCCACAAGATAATTGCCGAATAA

Protein sequence

MTAAVGASLPIPLSIATPPATAAPTAAAAIPATATGPVAPNANAPIAPTAPAPTPTAVAEPADKAAAASSALSNTHKIIAE
Homology
[Close]
BLAST of Lsi04G004530 vs. TrEMBL
Match: A0A022Q3C3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016488mg PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-14
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 1 

Query: 3   AAVGASLPIPLSIATPPATAAPTAAAAIPATATGPVAPNANAPIAPTAPAPTPTAVAEPA 62
           A VGAS PIPLSI TPPATAAPTAAAA PATA+GPVAP+A+AP AP AP  TP A A+ A
Sbjct: 41  ATVGASFPIPLSITTPPATAAPTAAAASPATASGPVAPSASAPSAPAAPVVTPAAAADVA 100

Query: 63  DKAAAASSALSNTHKIIAE 82
           DKAAAA SA  +T  IIAE
Sbjct: 101 DKAAAAISAFCSTQSIIAE 119

[Close]
BLAST of Lsi04G004530 vs. NCBI nr
Match: gi|604302911|gb|EYU22436.1| (hypothetical protein MIMGU_mgv1a016488mg [Erythranthe guttata])

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-14
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 1 

Query: 3   AAVGASLPIPLSIATPPATAAPTAAAAIPATATGPVAPNANAPIAPTAPAPTPTAVAEPA 62
           A VGAS PIPLSI TPPATAAPTAAAA PATA+GPVAP+A+AP AP AP  TP A A+ A
Sbjct: 41  ATVGASFPIPLSITTPPATAAPTAAAASPATASGPVAPSASAPSAPAAPVVTPAAAADVA 100

Query: 63  DKAAAASSALSNTHKIIAE 82
           DKAAAA SA  +T  IIAE
Sbjct: 101 DKAAAAISAFCSTQSIIAE 119

The following BLAST results are available for this feature:
BLAST of Lsi04G004530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G004530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A022Q3C3_ERYGU2.5e-1473.42Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016488mg PE=4 SV=1[more]
BLAST of Lsi04G004530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G004530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|604302911|gb|EYU22436.1|3.6e-1473.42hypothetical protein MIMGU_mgv1a016488mg [Erythranthe guttata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G004530.1Lsi04G004530.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G004530Cucurbita moschata (Rifu)cmolsiB269
Lsi04G004530Cucurbita moschata (Rifu)cmolsiB364
Lsi04G004530Cucurbita moschata (Rifu)cmolsiB429
Lsi04G004530Cucurbita moschata (Rifu)cmolsiB671
Lsi04G004530Cucurbita pepo (Zucchini)cpelsiB032
Lsi04G004530Cucurbita pepo (Zucchini)cpelsiB360
Lsi04G004530Wild cucumber (PI 183967)cpilsiB050
Lsi04G004530Wild cucumber (PI 183967)cpilsiB055
Lsi04G004530Wild cucumber (PI 183967)cpilsiB372
Lsi04G004530Wild cucumber (PI 183967)cpilsiB375
Lsi04G004530Cucumber (Chinese Long) v2culsiB051
Lsi04G004530Cucumber (Chinese Long) v2culsiB056
Lsi04G004530Cucumber (Chinese Long) v2culsiB368
Lsi04G004530Cucumber (Chinese Long) v2culsiB371
Lsi04G004530Melon (DHL92) v3.5.1lsimeB281
Lsi04G004530Melon (DHL92) v3.5.1lsimeB289
Lsi04G004530Melon (DHL92) v3.5.1lsimeB294
Lsi04G004530Watermelon (Charleston Gray)lsiwcgB253
Lsi04G004530Watermelon (Charleston Gray)lsiwcgB274
Lsi04G004530Watermelon (Charleston Gray)lsiwcgB283
Lsi04G004530Watermelon (Charleston Gray)lsiwcgB293
Lsi04G004530Watermelon (Charleston Gray)lsiwcgB304
Lsi04G004530Watermelon (97103) v1lsiwmB284
Lsi04G004530Watermelon (97103) v1lsiwmB312
Lsi04G004530Watermelon (97103) v1lsiwmB341
Lsi04G004530Cucumber (Gy14) v2cgyblsiB337
Lsi04G004530Cucumber (Gy14) v2cgyblsiB341
Lsi04G004530Melon (DHL92) v3.6.1lsimedB292
Lsi04G004530Melon (DHL92) v3.6.1lsimedB297
Lsi04G004530Melon (DHL92) v3.6.1lsimedB303
Lsi04G004530Melon (DHL92) v3.6.1lsimedB308
Lsi04G004530Silver-seed gourdcarlsiB091
Lsi04G004530Silver-seed gourdcarlsiB764
Lsi04G004530Cucumber (Chinese Long) v3cuclsiB061
Lsi04G004530Cucumber (Chinese Long) v3cuclsiB393
Lsi04G004530Cucumber (Chinese Long) v3cuclsiB397
Lsi04G004530Watermelon (97103) v2lsiwmbB261
Lsi04G004530Watermelon (97103) v2lsiwmbB284
Lsi04G004530Watermelon (97103) v2lsiwmbB311
Lsi04G004530Wax gourdlsiwgoB354
Lsi04G004530Wax gourdlsiwgoB377
Lsi04G004530Wax gourdlsiwgoB380
Lsi04G004530Wax gourdlsiwgoB408
Lsi04G004530Bottle gourd (USVL1VR-Ls)lsilsiB097
Lsi04G004530Bottle gourd (USVL1VR-Ls)lsilsiB099
Lsi04G004530Bottle gourd (USVL1VR-Ls)lsilsiB139
Lsi04G004530Cucumber (Gy14) v1cgylsiB119
Lsi04G004530Cucumber (Gy14) v1cgylsiB256
Lsi04G004530Cucumber (Gy14) v1cgylsiB339
Lsi04G004530Cucumber (Gy14) v1cgylsiB465
Lsi04G004530Cucurbita maxima (Rimu)cmalsiB280
Lsi04G004530Cucurbita maxima (Rimu)cmalsiB379
Lsi04G004530Cucurbita maxima (Rimu)cmalsiB678