Lsi04G003970 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G003970
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRibosomal protein L32
Locationchr04 : 3899248 .. 3902013 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTGCGGTGCCGGGCTTTGAGCTCTTGGGCCGAACAAAGGGATCCAAAGCCCGTCACCAACCCATTGGCCCAGCTCAATGTCCAAACGACGCCGTCGAATACGTGCTGGGGTTGGGGCATTTGCAAATTCCTAAACCCCGTCGTCTTCTTCGTCCGATTTCCACCGCCGGTATTCTGAAATCAGCACTGGCACTTGCTCGCAGCTATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGATGGGTTCAATGCTAGGGATTAAAGCGATGGCTAATACTTTACCCCATTCTTCGCCGATTTCTGGGATCGTGGACCGTAAGGACTCCACGCCCCCGCTTTTTCTTCCGGAGTTTAACCAGGAATCTGATAAAGATAGAATCAACAACTGCAGTATTATGGGATTTGGTTTCCCTAGCTTATCTTTTTCCGGGTGCATGGAGCTCATGGCTGTTCCTAAGAAGAAGGTATTGAATTTCCTCCTCCTATTTTCAAATAATCAAACACGTAGAAAGCCTATTGTTAGAATAGAAACTTAAACTGTTTGTTTCTTATGGATTAAGTAGAAACTTAAAATTTTACATTGCTTGAAGTTGTGGGATATGTTAGATGTTGCTGGAAGTATTAGAAATGAACTTAGAAAATCCGAAGATTTTAGGGAGCATTGGCAGTTGCATTTTTTTATGTTCAATTCTTCTGGAAATTTCAGATAGGGCTATGACTCTATGATAATTAAGTCTGCCTCTTCTCAATTTCTCAAGTAAAAAGAGTTGAATTATGAGCTAAATTTAAAAAACCAAAAAGAGTTCTTAAAAGCTATTTTTTTTTTAGTTTTTAAAACTTGACTTAGTTTTTTAAAGCCAGAAATTTAGAGGTGGAAGATAACGGCTTAATTTTCAAAAACTAAAAATAAAATGGTTACTAAATGGTAGGACTTTAGATATTCATCTTTATACGTTTCCTTGGTCAATGTGCTCAATATCATATGGTACTTGGTAGTAGTGACTGTTTCTCAATGAGTTAAGCACTGTGAAGATTGTATGGTTATAGAGTCATTAGATTTTCTATTAGACTTCAAATTCTTATATGACTTGACAATGTCGATATTTGAATGCATGATACTGTTTATATATATGTTTGAAGCATTTCTTGAGGTTTCCAAAGTTTCTTTTCTAAAACTTGTTCTTGTTTGGATTTATTGGGAAATATGAGAAAAAAAATTCATAGTCTATGTTTTGCAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAGGGCTCTAAAACCTATTCCAGTTATAGTTCGGTGCAAGTAAGATTCTCCCTGGTCTCCCCTAAACAAATTAGTGTTTAATGTTGATTTTAGCTTCTAGGAAAGTTAATCCGGATTTCACTGATTGTGATGATGAAACATGATCTGTATTGTTATTGTATACGTTATTGTATGATCATTCTGAAGCTGTTTCTTCACAAAGCTATTGCCTGATTATGACTCTATAATTTTGTGCTTCGTATTGGATGTATTCCATTTGTCAGTAAGTGGAAAGCTAACTAAATCTTCACAAATAACAAACAATACAACAACCTCCAATCAATGCGTCGAAACAATAGCGGAATATTAAGCCCTCTAATAACCAAAACAATGGGTCTTCTCTATTTACTAGTTAGTGATTGAAGCACAGTTTTTAGACTTTAGAGAAAAATGACATTCACAATAAGTCTTTCATGAAAGAAAAAATGGAATCGGTTGGTGTCAAGAGTGATAATGACAAGGATGCCAATTGACTCTGCTAGCCAAAATTTCAATATCATTCACTTCATTGGATAAGAAACAAGCATCGTGAAATGTAACAATGAGAATATTTCTGATAGCATAAATTGTTTAGAGAAATCTTTAACATTCCAGCCTCAGCCCATAATTTTGTGATAATGTAAAGTGCCTATAGTCTTCAAGAATTTTCTTGGTGCTAACTCTGTTATTGCAGGTGTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGGCCAGGGGAGCAGGATAACTCAGCCAGATGAGGCTATGCAGAGTAAAAAGGACAGACTGAAAGAAAGGTGTTCAGTCCCATATAATCCTCCCAATACGTGGGAGCTACAGTTTCCTTTTGAGTATTCTTCTTTATTAGGTTCTTTTAAGTTTTGGTTCTCCTGCTCACTGTATGACAGATGCAAGATTTCAACATGTTATAACCATTAACTAGCTGTTGAGCCATATTCTTGCTTTGTGCTATTCAGCAGACTTCCTTCAGTTCTTCCAGGTCTGAAATCCGACTCTTCTAGCATATGTTTCTCTTCTTAAACCGCTTCTTGTTCTATAGATCATAGAAAATTTCTTCCCACAGCTTTTGCGTAACTTGTTCCATATGAACTTTATTATTGGATTTGTCGACTGCTCTCCCTCATCACTGAAATGAAAACACAGAAATTGCTTGATGAGGTGCCAGACATGATGACTAGCCTTAACCGGTGTGGGCGGGGCTGGATGGAAAAGAGAGGTAAAAGAACTTAAGAATCAACCACGGTGGATAATGTAACTCAAACTAAAATCTATATAAGTATATTTATTTTCCATTGTTTTGTACTCTCCCACATTTGGAGAGAGATCAAATAAAGGAAGTCACAATGGTTGCAATGCGTCAAGACACTTCTCGACGGTCTTGGCCAGGGTTTTCAAAGATTACAAGAGAAGATGATATAAGATTAAATTTGTCTTT

mRNA sequence

ATGTTCTTGCGGTGCCGGGCTTTGAGCTCTTGGGCCGAACAAAGGGATCCAAAGCCCGTCACCAACCCATTGGCCCAGCTCAATGTCCAAACGACGCCGTCGAATACGTGCTGGGCTATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGATGGGTTCAATGCTAGGGATTAAAGCGATGGCTAATACTTTACCCCATTCTTCGCCGATTTCTGGGATCGTGGACCGTAAGGACTCCACGCCCCCGCTTTTTCTTCCGGAGTTTAACCAGGAATCTGATAAAGATAGAATCAACAACTGCAGTATTATGGGATTTGGTTTCCCTAGCTTATCTTTTTCCGGGTGCATGGAGCTCATGGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAGGGCTCTAAAACCTATTCCAGTTATAGTTCGGTGCAAGTGTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGGCCAGGGGAGCAGGATAACTCAGCCAGATGAGGCTATGCAGAGTAAAAAGGACAGACTGAAAGAAAGGTGTTCAGTCCCATATAATCCTCCCAATACGTGGGAGCTACAGTTTCCTTTTGAGTATTCTTCTTTATTAGGTTCTTTTAAGTTTTGGTTCTCCTGCTCACTGTATGACAGATGCAAGATTTCAACATGTTATAACCATTAACTAGCTGTTGAGCCATATTCTTGCTTTGTGCTATTCAGCAGACTTCCTTCAGTTCTTCCAGAAATTGCTTGATGAGGTGCCAGACATGATGACTAGCCTTAACCGGTGTGGGCGGGGCTGGATGGAAAAGAGAGGTAAAAGAACTTAAGAATCAACCACGGTGGATAATGTAACTCAAACTAAAATCTATATAAGTATATTTATTTTCCATTGTTTTGTACTCTCCCACATTTGGAGAGAGATCAAATAAAGGAAGTCACAATGGTTGCAATGCGTCAAGACACTTCTCGACGGTCTTGGCCAGGGTTTTCAAAGATTACAAGAGAAGATGATATAAGATTAAATTTGTCTTT

Coding sequence (CDS)

ATGTTCTTGCGGTGCCGGGCTTTGAGCTCTTGGGCCGAACAAAGGGATCCAAAGCCCGTCACCAACCCATTGGCCCAGCTCAATGTCCAAACGACGCCGTCGAATACGTGCTGGGCTATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGATGGGTTCAATGCTAGGGATTAAAGCGATGGCTAATACTTTACCCCATTCTTCGCCGATTTCTGGGATCGTGGACCGTAAGGACTCCACGCCCCCGCTTTTTCTTCCGGAGTTTAACCAGGAATCTGATAAAGATAGAATCAACAACTGCAGTATTATGGGATTTGGTTTCCCTAGCTTATCTTTTTCCGGGTGCATGGAGCTCATGGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAGGGCTCTAAAACCTATTCCAGTTATAGTTCGGTGCAAGTGTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGGCCAGGGGAGCAGGATAACTCAGCCAGATGA

Protein sequence

MFLRCRALSSWAEQRDPKPVTNPLAQLNVQTTPSNTCWAMALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLPHYYCCSGRPGEQDNSAR
Homology
[Close]
BLAST of Lsi04G003970 vs. TrEMBL
Match: A0A0A0KQP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606360 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.6e-61
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 1 

Query: 40  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRIN 99
           MALRIMRALEGQMGSMLG+KAMA  LPHSSPISG++  KDS PPL LPEFNQE D D+ N
Sbjct: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60

Query: 100 NCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLP 159
           NCSI+GFGFPSLSFSG MELMAVPKKKVSPHKR IRN P+ALKPIPVIVRCK CGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120

Query: 160 HYYCCSGRPGEQDNSA 176
           HYYCCSGRPG+QDNSA
Sbjct: 121 HYYCCSGRPGDQDNSA 136

[Close]
BLAST of Lsi04G003970 vs. TrEMBL
Match: B6EV28_POPAL (Ribosomal protein L32 OS=Populus alba GN=rpl32 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.4e-32
Identity = 72/134 (53.73%), Postives = 92/134 (68.66%), Query Frame = 1 

Query: 40  MALRIMR---ALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKD 99
           MALR+     A EG  G  LGI+   + +  + P+ G ++   + P   LPEF  ++++D
Sbjct: 1   MALRLGMLKCAAEGNNGCRLGIRKWTHVVAMAPPLDGALESSIAAPQFTLPEF--DANQD 60

Query: 100 RINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKV 159
              N S  GF FP  SF G MELMAVPK+KV+PHKRGIRNGP+ALKPIPVI+RCK CG+V
Sbjct: 61  TSKNSSDFGFTFPGFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPIPVIIRCKSCGQV 120

Query: 160 KLPHYYCCSGRPGE 171
           KLPH+YCCSG  G+
Sbjct: 121 KLPHFYCCSGDRGK 132

[Close]
BLAST of Lsi04G003970 vs. TrEMBL
Match: I3NMQ1_HEVBR (50S ribosomal protein L32pA OS=Hevea brasiliensis GN=RPL32pA PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.8e-32
Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = 1 

Query: 40  MALRI--MRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDR 99
           MALRI  ++   G+ G  L +   A+     SP+ G + R  + P + LPEF+   D   
Sbjct: 1   MALRIGMLKTAVGKYGCTLSLLRWAHIASMPSPLDGSLQRTTAPPDMVLPEFDTNPDNVN 60

Query: 100 INNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVK 159
            +  + + FGFPS SF G +E+MAVPKKKVSPHKRGIRNGP+ALKP PVI+RC+ CG++K
Sbjct: 61  SSYRNNLEFGFPSFSFGGSIEVMAVPKKKVSPHKRGIRNGPKALKPTPVIIRCRSCGRIK 120

Query: 160 LPHYYCCS---GRPGEQDN 174
           LPH+YCCS   G+ GEQ+N
Sbjct: 121 LPHFYCCSGDRGKAGEQNN 139

[Close]
BLAST of Lsi04G003970 vs. TrEMBL
Match: A0A067KYT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06075 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-31
Identity = 73/138 (52.90%), Postives = 92/138 (66.67%), Query Frame = 1 

Query: 39  AMALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRI 98
           A+ L +++A  G  G  LG+    +    S P+   + R  + P + LPEF+Q  D    
Sbjct: 2   ALRLGMLKAGGGNNGCTLGLLRWIHAAAISPPLDCSLHRTIAPPLMVLPEFDQTPDNSSR 61

Query: 99  NNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKL 158
           N    + FGF S SF G MELMAVPK+KVSPHKRGIRNGP+ALKPIPVI+RC+ CGKVKL
Sbjct: 62  NYNKNLEFGFRSFSFGGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCRSCGKVKL 121

Query: 159 PHYYCCS---GRPGEQDN 174
           PH+YCCS   G+ GEQ+N
Sbjct: 122 PHFYCCSGDTGKTGEQNN 139

[Close]
BLAST of Lsi04G003970 vs. TrEMBL
Match: B9HXW1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s17240g PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-31
Identity = 71/134 (52.99%), Postives = 92/134 (68.66%), Query Frame = 1 

Query: 40  MALRIMR---ALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKD 99
           MALR+     A E   G  LGI+   + +  + P+ G ++   ++P   LPEF  ++++D
Sbjct: 1   MALRLGMLKCAAEANNGCRLGIRKWTHVVAMAPPLDGALESSIASPQFTLPEF--DANQD 60

Query: 100 RINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKV 159
             NN S  GF FP  SF G MELMAVPK+KV+PHKRGIRNGP+ALKP PVI+RCK CG+V
Sbjct: 61  TSNNSSDFGFTFPGFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPTPVIIRCKSCGQV 120

Query: 160 KLPHYYCCSGRPGE 171
           KLPH+YCCSG  G+
Sbjct: 121 KLPHFYCCSGDRGK 132

[Close]
BLAST of Lsi04G003970 vs. TAIR10
Match: AT1G26740.1 (AT1G26740.1 Ribosomal L32p protein family)

HSP 1 Score: 137.5 bits (345), Expect = 7.9e-33
Identity = 67/129 (51.94%), Postives = 91/129 (70.54%), Query Frame = 1 

Query: 40  MALRIMRALEGQMGS--MLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDR 99
           MALR+       + S  +L  +++++     SP++G  DR  S PPL LPEF+Q  ++  
Sbjct: 1   MALRLTSLKRAAVESCRILETRSLSHVAAMPSPLNGAFDRPISMPPLVLPEFDQ--NQPG 60

Query: 100 INNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVK 159
           +      GFG PS +F+G MELMAVPKKK+S HKRGIRNGP+ALKP+PVI+RC+ CG+VK
Sbjct: 61  LIEEKSFGFGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVK 120

Query: 160 LPHYYCCSG 167
           LPH++CCSG
Sbjct: 121 LPHFFCCSG 127

[Close]
BLAST of Lsi04G003970 vs. TAIR10
Match: AT1G69485.1 (AT1G69485.1 Ribosomal L32p protein family)

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-22
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1 

Query: 117 MELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLPHYYCCSGR---PGEQDN 175
           MELMAVPKKK+S HKRGIRNGP+A KP PVI+RC+ CG+VKLPH+YCCSG    P EQ N
Sbjct: 1   MELMAVPKKKISKHKRGIRNGPKAFKPTPVIIRCRSCGRVKLPHFYCCSGERAIPDEQSN 60

[Close]
BLAST of Lsi04G003970 vs. NCBI nr
Match: gi|449434760|ref|XP_004135164.1| (PREDICTED: uncharacterized protein LOC101216290 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 3.8e-61
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 1 

Query: 40  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRIN 99
           MALRIMRALEGQMGSMLG+KAMA  LPHSSPISG++  KDS PPL LPEFNQE D D+ N
Sbjct: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60

Query: 100 NCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLP 159
           NCSI+GFGFPSLSFSG MELMAVPKKKVSPHKR IRN P+ALKPIPVIVRCK CGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120

Query: 160 HYYCCSGRPGEQDNSA 176
           HYYCCSGRPG+QDNSA
Sbjct: 121 HYYCCSGRPGDQDNSA 136

[Close]
BLAST of Lsi04G003970 vs. NCBI nr
Match: gi|659091150|ref|XP_008446396.1| (PREDICTED: uncharacterized protein LOC103489153 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 3.0e-58
Identity = 114/136 (83.82%), Postives = 121/136 (88.97%), Query Frame = 1 

Query: 40  MALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRIN 99
           MALRIMRALEGQ GSMLG+KAMA  LPHSS   G++  KDS PPL LPEFNQESD+DRIN
Sbjct: 1   MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRIN 60

Query: 100 NCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKLP 159
           NCSI+GFGFPSL FSG MELMAVPKKKVSPHKR IRN P+ALKPIPVI+RCK CGKVKLP
Sbjct: 61  NCSIVGFGFPSLYFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIIRCKGCGKVKLP 120

Query: 160 HYYCCSGRPGEQDNSA 176
           HYYCCSGRPGEQDNSA
Sbjct: 121 HYYCCSGRPGEQDNSA 134

[Close]
BLAST of Lsi04G003970 vs. NCBI nr
Match: gi|209976916|dbj|BAG80685.1| (ribosomal protein L32 [Populus alba])

HSP 1 Score: 146.0 bits (367), Expect = 6.3e-32
Identity = 72/134 (53.73%), Postives = 92/134 (68.66%), Query Frame = 1 

Query: 40  MALRIMR---ALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKD 99
           MALR+     A EG  G  LGI+   + +  + P+ G ++   + P   LPEF  ++++D
Sbjct: 1   MALRLGMLKCAAEGNNGCRLGIRKWTHVVAMAPPLDGALESSIAAPQFTLPEF--DANQD 60

Query: 100 RINNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKV 159
              N S  GF FP  SF G MELMAVPK+KV+PHKRGIRNGP+ALKPIPVI+RCK CG+V
Sbjct: 61  TSKNSSDFGFTFPGFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPIPVIIRCKSCGQV 120

Query: 160 KLPHYYCCSGRPGE 171
           KLPH+YCCSG  G+
Sbjct: 121 KLPHFYCCSGDRGK 132

[Close]
BLAST of Lsi04G003970 vs. NCBI nr
Match: gi|313586555|gb|ADR71288.1| (50S ribosomal protein L32pA [Hevea brasiliensis])

HSP 1 Score: 144.8 bits (364), Expect = 1.4e-31
Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = 1 

Query: 40  MALRI--MRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDR 99
           MALRI  ++   G+ G  L +   A+     SP+ G + R  + P + LPEF+   D   
Sbjct: 1   MALRIGMLKTAVGKYGCTLSLLRWAHIASMPSPLDGSLQRTTAPPDMVLPEFDTNPDNVN 60

Query: 100 INNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVK 159
            +  + + FGFPS SF G +E+MAVPKKKVSPHKRGIRNGP+ALKP PVI+RC+ CG++K
Sbjct: 61  SSYRNNLEFGFPSFSFGGSIEVMAVPKKKVSPHKRGIRNGPKALKPTPVIIRCRSCGRIK 120

Query: 160 LPHYYCCS---GRPGEQDN 174
           LPH+YCCS   G+ GEQ+N
Sbjct: 121 LPHFYCCSGDRGKAGEQNN 139

[Close]
BLAST of Lsi04G003970 vs. NCBI nr
Match: gi|802601939|ref|XP_012073093.1| (PREDICTED: uncharacterized protein LOC105634787 [Jatropha curcas])

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31
Identity = 73/138 (52.90%), Postives = 92/138 (66.67%), Query Frame = 1 

Query: 39  AMALRIMRALEGQMGSMLGIKAMANTLPHSSPISGIVDRKDSTPPLFLPEFNQESDKDRI 98
           A+ L +++A  G  G  LG+    +    S P+   + R  + P + LPEF+Q  D    
Sbjct: 2   ALRLGMLKAGGGNNGCTLGLLRWIHAAAISPPLDCSLHRTIAPPLMVLPEFDQTPDNSSR 61

Query: 99  NNCSIMGFGFPSLSFSGCMELMAVPKKKVSPHKRGIRNGPRALKPIPVIVRCKCCGKVKL 158
           N    + FGF S SF G MELMAVPK+KVSPHKRGIRNGP+ALKPIPVI+RC+ CGKVKL
Sbjct: 62  NYNKNLEFGFRSFSFGGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCRSCGKVKL 121

Query: 159 PHYYCCS---GRPGEQDN 174
           PH+YCCS   G+ GEQ+N
Sbjct: 122 PHFYCCSGDTGKTGEQNN 139

The following BLAST results are available for this feature:
BLAST of Lsi04G003970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G003970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQP7_CUCSA2.6e-6185.29Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606360 PE=3 SV=1[more]
B6EV28_POPAL4.4e-3253.73Ribosomal protein L32 OS=Populus alba GN=rpl32 PE=2 SV=1[more]
I3NMQ1_HEVBR9.8e-3251.0850S ribosomal protein L32pA OS=Hevea brasiliensis GN=RPL32pA PE=2 SV=1[more]
A0A067KYT5_JATCU1.3e-3152.90Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06075 PE=3 SV=1[more]
B9HXW1_POPTR1.3e-3152.99Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s17240g PE=3 SV=1[more]
BLAST of Lsi04G003970 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26740.17.9e-3351.94 Ribosomal L32p protein family[more]
AT1G69485.12.8e-2273.77 Ribosomal L32p protein family[more]
BLAST of Lsi04G003970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434760|ref|XP_004135164.1|3.8e-6185.29PREDICTED: uncharacterized protein LOC101216290 [Cucumis sativus][more]
gi|659091150|ref|XP_008446396.1|3.0e-5883.82PREDICTED: uncharacterized protein LOC103489153 [Cucumis melo][more]
gi|209976916|dbj|BAG80685.1|6.3e-3253.73ribosomal protein L32 [Populus alba][more]
gi|313586555|gb|ADR71288.1|1.4e-3151.0850S ribosomal protein L32pA [Hevea brasiliensis][more]
gi|802601939|ref|XP_012073093.1|1.8e-3152.90PREDICTED: uncharacterized protein LOC105634787 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR002677Ribosomal_L32p
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0044429 mitochondrial part
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G003970.1Lsi04G003970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002677Ribosomal protein L32pPFAMPF01783Ribosomal_L32pcoord: 121..165
score: 3.
IPR002677Ribosomal protein L32pTIGRFAMsTIGR01031TIGR01031coord: 121..163
score: 9.
IPR011332Zinc-binding ribosomal proteinunknownSSF57829Zn-binding ribosomal proteinscoord: 119..165
score: 5.55
NoneNo IPR availablePANTHERPTHR2102639S RIBOSOMAL PROTEIN L32, MITOCHONDRIALcoord: 37..171
score: 3.0
NoneNo IPR availablePANTHERPTHR21026:SF239S RIBOSOMAL PROTEIN L32, MITOCHONDRIALcoord: 37..171
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G003970Csa5G606360Cucumber (Chinese Long) v2culsiB368
Lsi04G003970CSPI05G23990Wild cucumber (PI 183967)cpilsiB372
Lsi04G003970Cucsa.284840Cucumber (Gy14) v1cgylsiB465
Lsi04G003970CmaCh18G011320Cucurbita maxima (Rimu)cmalsiB379
Lsi04G003970CmoCh18G011540Cucurbita moschata (Rifu)cmolsiB364
Lsi04G003970Cla010206Watermelon (97103) v1lsiwmB312
Lsi04G003970MELO3C012119Melon (DHL92) v3.5.1lsimeB281
Lsi04G003970ClCG05G024060Watermelon (Charleston Gray)lsiwcgB283
Lsi04G003970MELO3C012119.2Melon (DHL92) v3.6.1lsimedB297
Lsi04G003970Cla97C05G106070Watermelon (97103) v2lsiwmbB284
Lsi04G003970Bhi07G001254Wax gourdlsiwgoB380
Lsi04G003970Cp4.1LG09g01900Cucurbita pepo (Zucchini)cpelsiB032
Lsi04G003970CsGy5G023520Cucumber (Gy14) v2cgyblsiB337
Lsi04G003970Carg17285Silver-seed gourdcarlsiB091
Lsi04G003970CsaV3_5G032980Cucumber (Chinese Long) v3cuclsiB393
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G003970Silver-seed gourdcarlsiB048
Lsi04G003970Silver-seed gourdcarlsiB217
Lsi04G003970Cucumber (Chinese Long) v3cuclsiB061
Lsi04G003970Cucumber (Chinese Long) v3cuclsiB059
Lsi04G003970Cucumber (Chinese Long) v3cuclsiB397
Lsi04G003970Watermelon (97103) v2lsiwmbB281
Lsi04G003970Watermelon (97103) v2lsiwmbB311
Lsi04G003970Wax gourdlsiwgoB354
Lsi04G003970Wax gourdlsiwgoB375
Lsi04G003970Wax gourdlsiwgoB408
Lsi04G003970Bottle gourd (USVL1VR-Ls)lsilsiB099
Lsi04G003970Bottle gourd (USVL1VR-Ls)lsilsiB101
Lsi04G003970Cucumber (Gy14) v1cgylsiB154
Lsi04G003970Cucumber (Gy14) v1cgylsiB256
Lsi04G003970Cucumber (Gy14) v1cgylsiB339
Lsi04G003970Cucurbita maxima (Rimu)cmalsiB062
Lsi04G003970Cucurbita maxima (Rimu)cmalsiB280
Lsi04G003970Cucurbita maxima (Rimu)cmalsiB435
Lsi04G003970Cucurbita maxima (Rimu)cmalsiB678
Lsi04G003970Cucurbita moschata (Rifu)cmolsiB049
Lsi04G003970Cucurbita moschata (Rifu)cmolsiB269
Lsi04G003970Cucurbita moschata (Rifu)cmolsiB427
Lsi04G003970Cucurbita moschata (Rifu)cmolsiB671
Lsi04G003970Cucurbita pepo (Zucchini)cpelsiB360
Lsi04G003970Cucurbita pepo (Zucchini)cpelsiB461
Lsi04G003970Cucurbita pepo (Zucchini)cpelsiB469
Lsi04G003970Wild cucumber (PI 183967)cpilsiB053
Lsi04G003970Wild cucumber (PI 183967)cpilsiB055
Lsi04G003970Wild cucumber (PI 183967)cpilsiB375
Lsi04G003970Cucumber (Chinese Long) v2culsiB053
Lsi04G003970Cucumber (Chinese Long) v2culsiB056
Lsi04G003970Cucumber (Chinese Long) v2culsiB371
Lsi04G003970Melon (DHL92) v3.5.1lsimeB287
Lsi04G003970Melon (DHL92) v3.5.1lsimeB294
Lsi04G003970Watermelon (Charleston Gray)lsiwcgB253
Lsi04G003970Watermelon (Charleston Gray)lsiwcgB281
Lsi04G003970Watermelon (Charleston Gray)lsiwcgB293
Lsi04G003970Watermelon (97103) v1lsiwmB284
Lsi04G003970Watermelon (97103) v1lsiwmB328
Lsi04G003970Watermelon (97103) v1lsiwmB341
Lsi04G003970Cucumber (Gy14) v2cgyblsiB048
Lsi04G003970Cucumber (Gy14) v2cgyblsiB341
Lsi04G003970Melon (DHL92) v3.6.1lsimedB292
Lsi04G003970Melon (DHL92) v3.6.1lsimedB302
Lsi04G003970Melon (DHL92) v3.6.1lsimedB308