Lsi04G003830 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G003830
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_82
Locationchr04 : 3789205 .. 3789802 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTCCCCTTTCGTTTTTCCATTTCCTTTTGAATGAGTTATTGCCTGTGCCCTTTCTGCATATCTATGTTGTTCATACCACATCAAACTATCTTTCACTCCCTTCTGACTGCCTCTCATATCCTGTGTTAAGTTTTAAGAGATTTACATGAGCATAATACTGAAGAAAATCACAACCCATCTGAGTATTCAACAAAGCTTTTTCTTCCCACAGGAAAGCCATTGAAGAGCTTGCCGGATTTACTTCGCGAGTACAACTTACCACCCGGCCTCTTTCCTCAGAACATGACCTGCTATGAATTTGATGAATCTACATCCAGGCTGATTGTCTACTTACCATCCGTTTGTGAGATTAGCTTCAAGGATTCCTCTGTAGTCAGATATGCAACAAGGGTGAAAGGAACTCTTCAGAGAGGGAAGCTTACAAGCATTGAAGGAATGAAGACAAAAGTCCTTGTGTGGGTGAAAGTGACAAGCGTGTCGGTTGAGGGCTACAAATCTGATAAGGTCTGGTTCACAGCAGGAGTGAAGAAGTCGAGATCGAAAGATGCATATGAAAAGCCCCATGACGCCGTTAGGGTAGAAGAATTCTGA

mRNA sequence

ATGAAAGATTTACATGAGCATAATACTGAAGAAAATCACAACCCATCTGAGTATTCAACAAAGCTTTTTCTTCCCACAGGAAAGCCATTGAAGAGCTTGCCGGATTTACTTCGCGAGTACAACTTACCACCCGGCCTCTTTCCTCAGAACATGACCTGCTATGAATTTGATGAATCTACATCCAGGCTGATTGTCTACTTACCATCCGTTTGTGAGATTAGCTTCAAGGATTCCTCTGTAGTCAGATATGCAACAAGGGTGAAAGGAACTCTTCAGAGAGGGAAGCTTACAAGCATTGAAGGAATGAAGACAAAAGTCCTTGTGTGGGTGAAAGTGACAAGCGTGTCGGTTGAGGGCTACAAATCTGATAAGGTCTGGTTCACAGCAGGAGTGAAGAAGTCGAGATCGAAAGATGCATATGAAAAGCCCCATGACGCCGTTAGGGTAGAAGAATTCTGA

Coding sequence (CDS)

ATGAAAGATTTACATGAGCATAATACTGAAGAAAATCACAACCCATCTGAGTATTCAACAAAGCTTTTTCTTCCCACAGGAAAGCCATTGAAGAGCTTGCCGGATTTACTTCGCGAGTACAACTTACCACCCGGCCTCTTTCCTCAGAACATGACCTGCTATGAATTTGATGAATCTACATCCAGGCTGATTGTCTACTTACCATCCGTTTGTGAGATTAGCTTCAAGGATTCCTCTGTAGTCAGATATGCAACAAGGGTGAAAGGAACTCTTCAGAGAGGGAAGCTTACAAGCATTGAAGGAATGAAGACAAAAGTCCTTGTGTGGGTGAAAGTGACAAGCGTGTCGGTTGAGGGCTACAAATCTGATAAGGTCTGGTTCACAGCAGGAGTGAAGAAGTCGAGATCGAAAGATGCATATGAAAAGCCCCATGACGCCGTTAGGGTAGAAGAATTCTGA

Protein sequence

MKDLHEHNTEENHNPSEYSTKLFLPTGKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATRVKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDAVRVEEF
Homology
[Close]
BLAST of Lsi04G003830 vs. Swiss-Prot
Match: Y5161_ARATH (Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-35
Identity = 71/126 (56.35%), Postives = 100/126 (79.37%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GK  K LP+LL+EY+LP G+FP + T YEFDE T +L V +PS+CE+ +KDSSV+++ T 
Sbjct: 48  GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTT 107

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           V G L++GKLT +EG+KTKV++WVKVTS+S +   + KV+FTAG+KKSRS+DAYE   + 
Sbjct: 108 VTGHLEKGKLTDVEGIKTKVMIWVKVTSISTD---ASKVYFTAGMKKSRSRDAYEVQRNG 167

Query: 147 VRVEEF 153
           +RV++F
Sbjct: 168 LRVDKF 170

[Close]
BLAST of Lsi04G003830 vs. TrEMBL
Match: A0A0A0KSU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606500 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-61
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDES S+LIVYLPS CEISFKDSSVVRYATR
Sbjct: 53  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESKSKLIVYLPSACEISFKDSSVVRYATR 112

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           VKGTLQRGKLT+IEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA
Sbjct: 113 VKGTLQRGKLTNIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 172

Query: 147 VRVEEF 153
           +RV EF
Sbjct: 173 IRVGEF 178

[Close]
BLAST of Lsi04G003830 vs. TrEMBL
Match: A0A068V3D3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040775001 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-54
Identity = 107/126 (84.92%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GKPLKSLPDLLRE+NLPPGLFPQN+TCYEFD S S+LIVYLPS CE+ FKDSSVVRYATR
Sbjct: 53  GKPLKSLPDLLREFNLPPGLFPQNITCYEFDASKSKLIVYLPSPCEVCFKDSSVVRYATR 112

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           +K TL RGKLT IEGMKTKVLVWVKVTSV+VEGYKSDK+WF AGVKKSR KDAYE P DA
Sbjct: 113 IKATLSRGKLTGIEGMKTKVLVWVKVTSVNVEGYKSDKLWFAAGVKKSRPKDAYEMPRDA 172

Query: 147 VRVEEF 153
           V+VEEF
Sbjct: 173 VKVEEF 178

[Close]
BLAST of Lsi04G003830 vs. TrEMBL
Match: D7TA72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g00510 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-54
Identity = 106/126 (84.13%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GKPLK+LPDLLREYNLPPGLFPQN+TCYEFDES ++L VYLPS CE+SF DSSV+RYATR
Sbjct: 69  GKPLKTLPDLLREYNLPPGLFPQNITCYEFDESKAKLTVYLPSACEVSFSDSSVIRYATR 128

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           VKG L RGKLT IEGMKTKVLVWVKVT+V+VE YKSDKVWFTAGVKKSR KDAYE P DA
Sbjct: 129 VKGILLRGKLTGIEGMKTKVLVWVKVTNVAVESYKSDKVWFTAGVKKSRPKDAYEMPRDA 188

Query: 147 VRVEEF 153
           VRV+EF
Sbjct: 189 VRVQEF 194

[Close]
BLAST of Lsi04G003830 vs. TrEMBL
Match: A0A0B0MMU6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22922 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-54
Identity = 107/126 (84.92%), Postives = 115/126 (91.27%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GKP KSLPDLLREYNLPPGLFPQN+ CYEFDE+ ++LIVY+ S CE+SFKDSSV+RYATR
Sbjct: 53  GKPTKSLPDLLREYNLPPGLFPQNVICYEFDETKAKLIVYMSSPCEVSFKDSSVIRYATR 112

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           VKG L RGKLT IEGMKTKVLVWVKVTSV+VEGYKSDKVWFTAGVKKSR KDAYE P DA
Sbjct: 113 VKGILLRGKLTGIEGMKTKVLVWVKVTSVAVEGYKSDKVWFTAGVKKSRPKDAYETPRDA 172

Query: 147 VRVEEF 153
           VRVEEF
Sbjct: 173 VRVEEF 178

[Close]
BLAST of Lsi04G003830 vs. TrEMBL
Match: V4VM74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022544mg PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.6e-54
Identity = 109/141 (77.30%), Postives = 121/141 (85.82%), Query Frame = 1 

Query: 14  NPSEYSTKLFLPT--GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVC 73
           N  E   KL L    GKPLK+LPDLLREYN+PPGLFP+N+TCYEFDES S+LIVYLPS C
Sbjct: 33  NTVEEKAKLILSKLKGKPLKALPDLLREYNIPPGLFPRNITCYEFDESRSKLIVYLPSPC 92

Query: 74  EISFKDSSVVRYATRVKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGV 133
           E+SFKDSSVVRYATRVKGTL RGKL+ IEGMKTKVLVWVKVT V+VE YKSDK+WFTAGV
Sbjct: 93  EVSFKDSSVVRYATRVKGTLSRGKLSVIEGMKTKVLVWVKVTGVAVESYKSDKLWFTAGV 152

Query: 134 KKSRSKDAYEKPHDAVRVEEF 153
           K SR KDAYE P DA+RVE++
Sbjct: 153 KVSRPKDAYEMPRDAIRVEQY 173

[Close]
BLAST of Lsi04G003830 vs. TAIR10
Match: AT2G03350.1 (AT2G03350.1 Protein of unknown function, DUF538)

HSP 1 Score: 196.8 bits (499), Expect = 9.5e-51
Identity = 91/123 (73.98%), Postives = 107/123 (86.99%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GKPLKSLPDLL+EYNLPPGLFPQN+ CYEFDE+ ++L V+  S CE++FKD S +RYATR
Sbjct: 53  GKPLKSLPDLLKEYNLPPGLFPQNIICYEFDETKNKLTVFFSSPCEVTFKDGSAIRYATR 112

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           VKG L RGKL  +EGMKTKVLVWVKVT++SVE  KSDK+WFTAGVKKSRSKD Y+ PHDA
Sbjct: 113 VKGILLRGKLMGVEGMKTKVLVWVKVTTISVESSKSDKLWFTAGVKKSRSKDVYDTPHDA 172

Query: 147 VRV 150
           ++V
Sbjct: 173 IKV 175

[Close]
BLAST of Lsi04G003830 vs. TAIR10
Match: AT5G01610.1 (AT5G01610.1 Protein of unknown function, DUF538)

HSP 1 Score: 151.0 bits (380), Expect = 6.0e-37
Identity = 71/126 (56.35%), Postives = 100/126 (79.37%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GK  K LP+LL+EY+LP G+FP + T YEFDE T +L V +PS+CE+ +KDSSV+++ T 
Sbjct: 48  GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTT 107

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           V G L++GKLT +EG+KTKV++WVKVTS+S +   + KV+FTAG+KKSRS+DAYE   + 
Sbjct: 108 VTGHLEKGKLTDVEGIKTKVMIWVKVTSISTD---ASKVYFTAGMKKSRSRDAYEVQRNG 167

Query: 147 VRVEEF 153
           +RV++F
Sbjct: 168 LRVDKF 170

[Close]
BLAST of Lsi04G003830 vs. TAIR10
Match: AT3G08890.1 (AT3G08890.1 Protein of unknown function, DUF538)

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-36
Identity = 70/126 (55.56%), Postives = 98/126 (77.78%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GK  K LP+LL+E+ LP G+FP++ T YEF+E T +L V++PS+CE+ +KD+SV+R+ T 
Sbjct: 48  GKMQKPLPELLKEFGLPVGIFPRDATNYEFNEQTRKLTVFIPSICEVGYKDTSVLRFTTT 107

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           V G L++GKL  +EGMKTKV++WVKVTS+S +   S KV FTAG+KKSRS+DAYE   D 
Sbjct: 108 VTGFLEKGKLADVEGMKTKVMIWVKVTSISAD---SSKVHFTAGMKKSRSRDAYEVLRDG 167

Query: 147 VRVEEF 153
           V +++F
Sbjct: 168 VEIDKF 170

[Close]
BLAST of Lsi04G003830 vs. TAIR10
Match: AT5G37070.1 (AT5G37070.1 Protein of unknown function, DUF538)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-35
Identity = 69/126 (54.76%), Postives = 96/126 (76.19%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GK  K LP+LL+E+ LP G+FPQ+ T YEF+E T +L V++P  CE+ ++DSSV+R++T 
Sbjct: 48  GKMQKPLPELLKEFGLPVGIFPQDATNYEFNEETGKLTVFIPETCEVGYRDSSVLRFSTT 107

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           V G L++GKL  +EGMKTKV++WVKVT +S +   S KV+FTAG+KKSRS+DAYE     
Sbjct: 108 VTGYLEKGKLAEVEGMKTKVMIWVKVTCISAD---SSKVYFTAGIKKSRSRDAYEVIRPG 167

Query: 147 VRVEEF 153
           V V++F
Sbjct: 168 VGVDKF 170

[Close]
BLAST of Lsi04G003830 vs. TAIR10
Match: AT1G61667.1 (AT1G61667.1 Protein of unknown function, DUF538)

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-08
Identity = 37/114 (32.46%), Postives = 57/114 (50.00%), Query Frame = 1 

Query: 32  SLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATRVKGTL 91
           S+ +LL    LP GLFP N+  Y  D+ T  L V L + C   F++   V +   +K  L
Sbjct: 21  SIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENR--VYFDRVIKANL 80

Query: 92  QRGKLTSIEGM-KTKVLVWVKVTSVSVEGYKSDKVWFTAGV-KKSRSKDAYEKP 144
             G L  +EG+ + ++ +W+ V  ++V    S  V F  GV  K  S+  +E P
Sbjct: 81  SYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFEDP 132

[Close]
BLAST of Lsi04G003830 vs. NCBI nr
Match: gi|449434748|ref|XP_004135158.1| (PREDICTED: uncharacterized protein At5g01610-like [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDES S+LIVYLPS CEISFKDSSVVRYATR
Sbjct: 53  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESKSKLIVYLPSACEISFKDSSVVRYATR 112

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           VKGTLQRGKLT+IEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA
Sbjct: 113 VKGTLQRGKLTNIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 172

Query: 147 VRVEEF 153
           +RV EF
Sbjct: 173 IRVGEF 178

[Close]
BLAST of Lsi04G003830 vs. NCBI nr
Match: gi|659091176|ref|XP_008446410.1| (PREDICTED: uncharacterized protein At5g01610-like isoform X1 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDES S+LIVYLPS CEISFKDSSVVRYATR
Sbjct: 53  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESKSKLIVYLPSACEISFKDSSVVRYATR 112

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           VKGTLQRGKLT+IEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA
Sbjct: 113 VKGTLQRGKLTNIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 172

Query: 147 VRVEEF 153
           +RV EF
Sbjct: 173 IRVGEF 178

[Close]
BLAST of Lsi04G003830 vs. NCBI nr
Match: gi|659091178|ref|XP_008446412.1| (PREDICTED: uncharacterized protein At5g01610-like isoform X2 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDES S+LIVYLPS CEISFKDSSVVRYATR
Sbjct: 47  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESKSKLIVYLPSACEISFKDSSVVRYATR 106

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           VKGTLQRGKLT+IEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA
Sbjct: 107 VKGTLQRGKLTNIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 166

Query: 147 VRVEEF 153
           +RV EF
Sbjct: 167 IRVGEF 172

[Close]
BLAST of Lsi04G003830 vs. NCBI nr
Match: gi|697098789|ref|XP_009628499.1| (PREDICTED: uncharacterized protein At5g01610-like [Nicotiana tomentosiformis])

HSP 1 Score: 226.1 bits (575), Expect = 4.1e-56
Identity = 108/126 (85.71%), Postives = 118/126 (93.65%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GKP KSLPDLLREYNLPPGLFPQN+TCYEFDES ++LIVYLPS CE+SFKDSSV+RYATR
Sbjct: 53  GKPTKSLPDLLREYNLPPGLFPQNITCYEFDESNAKLIVYLPSACEVSFKDSSVMRYATR 112

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           VKGTL RGKLT I+GMKTKVLVWVKVTS++VE YKSDKVWFTAGVKKSRSKDAYE P DA
Sbjct: 113 VKGTLSRGKLTGIDGMKTKVLVWVKVTSINVESYKSDKVWFTAGVKKSRSKDAYEMPRDA 172

Query: 147 VRVEEF 153
           ++VEEF
Sbjct: 173 LKVEEF 178

[Close]
BLAST of Lsi04G003830 vs. NCBI nr
Match: gi|698500280|ref|XP_009795914.1| (PREDICTED: uncharacterized protein At5g01610-like [Nicotiana sylvestris])

HSP 1 Score: 224.9 bits (572), Expect = 9.2e-56
Identity = 108/126 (85.71%), Postives = 116/126 (92.06%), Query Frame = 1 

Query: 27  GKPLKSLPDLLREYNLPPGLFPQNMTCYEFDESTSRLIVYLPSVCEISFKDSSVVRYATR 86
           GKP KSLPDLLREYNLPPGLFPQN+TCYEFDES ++LIVYLPS CE+ FKDSSV RYATR
Sbjct: 53  GKPTKSLPDLLREYNLPPGLFPQNITCYEFDESNAKLIVYLPSACEVCFKDSSVTRYATR 112

Query: 87  VKGTLQRGKLTSIEGMKTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDA 146
           VKGTL RGKLT I+GMKTKVLVWVKVTS++VE YKSDKVWFTAGVKKSRSKDAYE P DA
Sbjct: 113 VKGTLSRGKLTGIDGMKTKVLVWVKVTSINVESYKSDKVWFTAGVKKSRSKDAYEMPRDA 172

Query: 147 VRVEEF 153
           V+VEEF
Sbjct: 173 VKVEEF 178

The following BLAST results are available for this feature:
BLAST of Lsi04G003830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y5161_ARATH1.1e-3556.35Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1[more]
BLAST of Lsi04G003830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSU5_CUCSA1.3e-6195.24Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606500 PE=4 SV=1[more]
A0A068V3D3_COFCA1.2e-5484.92Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040775001 PE=4 SV=1[more]
D7TA72_VITVI2.1e-5484.13Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g00510 PE=4 SV=... [more]
A0A0B0MMU6_GOSAR2.7e-5484.92Uncharacterized protein OS=Gossypium arboreum GN=F383_22922 PE=4 SV=1[more]
V4VM74_9ROSI4.6e-5477.30Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022544mg PE=4 SV=1[more]
BLAST of Lsi04G003830 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G03350.19.5e-5173.98 Protein of unknown function, DUF538[more]
AT5G01610.16.0e-3756.35 Protein of unknown function, DUF538[more]
AT3G08890.12.3e-3655.56 Protein of unknown function, DUF538[more]
AT5G37070.11.9e-3554.76 Protein of unknown function, DUF538[more]
AT1G61667.15.8e-0832.46 Protein of unknown function, DUF538[more]
BLAST of Lsi04G003830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434748|ref|XP_004135158.1|1.9e-6195.24PREDICTED: uncharacterized protein At5g01610-like [Cucumis sativus][more]
gi|659091176|ref|XP_008446410.1|1.9e-6195.24PREDICTED: uncharacterized protein At5g01610-like isoform X1 [Cucumis melo][more]
gi|659091178|ref|XP_008446412.1|1.9e-6195.24PREDICTED: uncharacterized protein At5g01610-like isoform X2 [Cucumis melo][more]
gi|697098789|ref|XP_009628499.1|4.1e-5685.71PREDICTED: uncharacterized protein At5g01610-like [Nicotiana tomentosiformis][more]
gi|698500280|ref|XP_009795914.1|9.2e-5685.71PREDICTED: uncharacterized protein At5g01610-like [Nicotiana sylvestris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007493DUF538
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G003830.1Lsi04G003830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007493Protein of unknown function DUF538GENE3DG3DSA:2.30.240.10coord: 27..151
score: 6.8
IPR007493Protein of unknown function DUF538PFAMPF04398DUF538coord: 35..141
score: 8.2
IPR007493Protein of unknown function DUF538unknownSSF141562At5g01610-likecoord: 25..151
score: 5.36
NoneNo IPR availablePANTHERPTHR31676FAMILY NOT NAMEDcoord: 27..152
score: 8.3
NoneNo IPR availablePANTHERPTHR31676:SF5SUBFAMILY NOT NAMEDcoord: 27..152
score: 8.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G003830Csa1G038930Cucumber (Chinese Long) v2culsiB053
Lsi04G003830CSPI01G05850Wild cucumber (PI 183967)cpilsiB053
Lsi04G003830Cucsa.112980Cucumber (Gy14) v1cgylsiB154
Lsi04G003830Cla018587Watermelon (97103) v1lsiwmB328
Lsi04G003830MELO3C002004Melon (DHL92) v3.5.1lsimeB287
Lsi04G003830ClCG04G012040Watermelon (Charleston Gray)lsiwcgB281
Lsi04G003830MELO3C012133.2Melon (DHL92) v3.6.1lsimedB297
Lsi04G003830MELO3C002004.2Melon (DHL92) v3.6.1lsimedB302
Lsi04G003830Cla97C04G078940Watermelon (97103) v2lsiwmbB281
Lsi04G003830CsGy1G005600Cucumber (Gy14) v2cgyblsiB048
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi04G003830Lsi02G000930Bottle gourd (USVL1VR-Ls)lsilsiB101
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G003830Melon (DHL92) v3.6.1lsimedB308
Lsi04G003830Silver-seed gourdcarlsiB048
Lsi04G003830Silver-seed gourdcarlsiB091
Lsi04G003830Silver-seed gourdcarlsiB217
Lsi04G003830Cucumber (Chinese Long) v3cuclsiB061
Lsi04G003830Cucumber (Chinese Long) v3cuclsiB059
Lsi04G003830Cucumber (Chinese Long) v3cuclsiB393
Lsi04G003830Watermelon (97103) v2lsiwmbB284
Lsi04G003830Wax gourdlsiwgoB375
Lsi04G003830Wax gourdlsiwgoB380
Lsi04G003830Wax gourdlsiwgoB408
Lsi04G003830Cucumber (Gy14) v1cgylsiB339
Lsi04G003830Cucumber (Gy14) v1cgylsiB465
Lsi04G003830Cucurbita maxima (Rimu)cmalsiB062
Lsi04G003830Cucurbita maxima (Rimu)cmalsiB214
Lsi04G003830Cucurbita maxima (Rimu)cmalsiB379
Lsi04G003830Cucurbita maxima (Rimu)cmalsiB435
Lsi04G003830Cucurbita maxima (Rimu)cmalsiB678
Lsi04G003830Cucurbita moschata (Rifu)cmolsiB049
Lsi04G003830Cucurbita moschata (Rifu)cmolsiB364
Lsi04G003830Cucurbita moschata (Rifu)cmolsiB427
Lsi04G003830Cucurbita moschata (Rifu)cmolsiB671
Lsi04G003830Cucurbita pepo (Zucchini)cpelsiB032
Lsi04G003830Cucurbita pepo (Zucchini)cpelsiB360
Lsi04G003830Cucurbita pepo (Zucchini)cpelsiB461
Lsi04G003830Wild cucumber (PI 183967)cpilsiB055
Lsi04G003830Wild cucumber (PI 183967)cpilsiB372
Lsi04G003830Cucumber (Chinese Long) v2culsiB056
Lsi04G003830Cucumber (Chinese Long) v2culsiB368
Lsi04G003830Melon (DHL92) v3.5.1lsimeB281
Lsi04G003830Melon (DHL92) v3.5.1lsimeB294
Lsi04G003830Watermelon (Charleston Gray)lsiwcgB283
Lsi04G003830Watermelon (Charleston Gray)lsiwcgB293
Lsi04G003830Watermelon (97103) v1lsiwmB312
Lsi04G003830Watermelon (97103) v1lsiwmB341
Lsi04G003830Cucumber (Gy14) v2cgyblsiB337