Lsi04G003810 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G003810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionBasic helix-loop-helix DNA-binding superfamily protein
Locationchr04 : 3774493 .. 3778321 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCAATAATGGCGAACAACCCTATCCGTTGTGCACCATCTTCACAAACCGATGAAAAACTCATAGACAGAAATCGAAGAAAGGAAATGGAAGATCTTTTTTCAACACTCAATTCTCTCGTCCCCCATCAAAGCTCAACGGTTTCTTTCCATTTTAATTTATTTCTATTATTATTTGGGAATAACCCCAAGCAATTTTTTTTTTTTTTTTTTTAATAATCTTTTATTTGCAGGAAGCAAGAACGATGGTGGATGAGCTAGAAGATGCCACAAATTACATAAAAGAATTACAGAAAAACATTGAGAAATTAAAAGAGAAAAACGAGAAGCTAATAATGGGAAAAAATAAAAAAATGGTAGAAAAAGATAGAAGAAGAAAAAGCAAACCCAAATTATTGGAGCATGTTAAAGCTCATGAAGTGGGTTCTTCAGTGCAGATCTTTTTGACTACTGGTTCAGATTATCACTCTATTATTCATCAAATCCTTATCCTCCTCCAAGATAATGGAGCTGAGACCGTCAATGTCAATCAGACAAGGGTCAAAGACCGTGTTTTTCACAGGATTACTGCACAGGTAATTTATTATATACTCGCTAATTTAAATATCGTTTAGTAGTTATTTAGTTTCGAAAATTTATTATTATTATTATTTTTGTAATGGTAACATTATTTTTTGTTTTCCATTATCTGCATTTTAATTCAAATGAAGTGCAAAAAATCAAGACTCTTTTTAATTACTATTTGATTTTTTGTTTTTTGTTTTAAAAAATTAAGTTTACGACACTCTTTTTACTTCTAAACGTCTTAGTTTGTTATTTTCTTTTATCTATATTTTTAAAATTAAACTAAATTTTAAAGTTATTATATATATATATATAAAGTTAACTTTTTTTTTTTTGTTTTTTGAAATTTAACTAAGAATTCAATTTTTTTTTACTTAAGAGATGAAAACTATTATAAAAAATTAAGAGAAAATAAATTTAATTTTTAAATATAAAAAACTAAAAATTAAATGGTTATTAAATGTAACCTACAAAATTGATTTCTAAAAATTTGTTTTTGTTTTTTTTTTAATTCGACTAGAAATAGAAATTCGTCTTTCACATGGTGAAAAAACAAGCACATAAAAGGATATTTATTTTTATTTGTTATGTTATTTTCTTTTTAACTTTTGGTCCCTCACACAAATTGATTGGATGAAATGTGTTTAATTCATTTAATTGATTATTATTAAGAGGACATCTTGTTGTTCTACAGTCGAAAATTTGATTTCCCACCATAAACTTGTGAATTTCAAAAAGGGAAGGAAAAAAAAAAGTCACGTGGGTATCTTGTTCTATAAACTGCAAAAATAATTCACGTACGGAAAGTTTTTTTTTCCTCTTTATCGTTTTTTTTCCGTCGTATGAACATTTGCGTTTTGCTCTGTTTGAAGAAAACTATTTTATTTTTTGGAAAATTTTTACGGTTAGAAAAAATGTCAAACTATTTACAGAAGATAGAAAAAAAAATACTGATAGACATTGATAGACTTCTATCAACATCTATCAGTGATAGACTACTACCATTTCTATCACTATAGACCCTGATAGACTTCTATCGGCGTCTATCACAAACTATCTAAAAATTTTGCTATTTTGTGTAAATAGTTTTTCTCATTTTTCTATTTTTAAAAACTCTCATTTTTCTTTTTTTTTTTTTTCAAAATTATGTTTGTTTTATTTTATTTTATTTATTTTTTTTCATGATTTTCATCCTCTTTAGGTAAATATTTGAATTATTAGTTTAAAAATACAGAAATATATTTCTAAGACTAACTATTATCATTATTATTTGATCTTATTTGGTAACTATTTTATTTTATTTTTTTAAAAAAAGTTAAGCCTATTTCTTCACATTTTAAAGATGTTTTTAAATATAGGAAGATGAATAAAAATATTTACAAATTATATAACAAAATTTCGTTGTCTATCGTGACACATATAATAGTCTATTACGATCTATTGCAGATAGACAGTGAACTTTTGGTATACTTATAAATATGTTCAGCATTTTGTCATTTAAAATAATTTCTCTTTTCTTTTACGATGGTTTGCATATTCCTAAGTACAAGAGTCGAATTCTAGCAAAACTCCAAAAACAAAAACTACCTTTTTTTTGTTTTCAAAATTTGACATGTTTTTTTTTTTTTAAAAAAAAAAGTTGATAAAAAAGCAGATAGCACTGCAAGAAATTGAGAGGTAAAAGAGGTGTTTATAAACTTATTTTTAAAAAACTAAATAGTCACCAAATGGGATCTTAGTTTTCAAATTTTGGTTTAAATTTTGAAAATGTCCCTTAAATGCAAACAACAAAACAAATAAACAAATAGACGAAAGTAGTGTTTGTAGACTTATAATATTTTTGAAAGTGATTATGAAATTATTAGAATCACTATTGTCATTTTCCAAATCACTTAAAAAAATGCTTTTAATATTCAGAATAGCATGAAAAATGTGCACAAAAGTGTAAAATTAAACTTTGAATTGATTTTGAGTGATTAAAAGTGTATTTCAGAGTGATTTTAAATATGACAAAAATGATTTTAACCATTTCAAAATCATTCCCAAACATGGTATTAATATTCAAAAATGAAAAAGTTATCAAATGGAGTCTTGATTTTTTAAATTGTATTACTTTCTCACAATTTCTCTACAACACACTTCATTTTTCTTAAGGTAACATTTGAATTCTTAACCAAACTCCAAATAGAAAATAAGTTTTCAAAACTATTTGTTTAACCATTTAATTTTTTGGTTTTAAGTTTTTGAAAATTAAGCTTTTAACCATCTCTTCTACCTCTAAATTTCTTGCTCCGTGACTACTGTTTACCAATATTTTCAAAAAATCAAGACAAGTTTTGATATATATATATATATTTGAATTTGACTATGAATTCAACTCTACTTAAGAAATATGCAAACCATTGTAAAAAATTGAGAGAAAATAGACTTAATTTTCAAAAAGTGAAAACCAAAATTTAAATGATGATCAAACAAAGCCTTAGTTTCCAAATTTTGGATTTTAAAATAATTTCTATAAAGTAGATAACAATTTAAAAAAAATAAAAAGGAAATTTTTAAAAAATAGAAAAATAAGGAAAACTATTTATACAAAATAACAAAAATTTTAGATAGTTGTGATAGACGCTGATAGAAGTCTATCAGAGTCTATCAGTGATAGAAATGATAGAAGTTTATCACGTATGAATGCTGATAGAAGTCTATCAACGTTTGTCGATATATATATATTTTTTATTATTTTCTATAAATAGTTTGACAATTTTTCTATCGAGGGAAAATTTCCCAAAATAAAAATGGATCAAACGCCTAAATTTTAATATTGGTTTCAGCCATAAATTTCATGCTTAGAGGTTAGTAGGAAAATATCTTTCAACATGAAAATAGCTTGCATTATCTGATCTTCTTGGCGTACCATATCTAAATAAAAATTAAAAAAATATATATATATTTTAGGGTAAAATGTTGTTTTAAACACGAAATAAAAGTTATTGCAAATATGCTTTAAGTTGTCCTCGTTCACTGTCGGTAAATGTAAGAATTAATTTAACCAATTTCTTTGTCGTGTATTATTTCTCGTATTTCCTAACTTGGAATACACTATGATAGAATTAACATTATAATGCAAATAATAATAATAACAAAAATTCATGATGATATTTTGAAAATTTAGGTGGATGGAGAAGGAATGGCCCCAAAAGATGGTAAGAAAATTTGTGAGATAGTGAAGAACTTTGTTTCAGAGTATAAAGATGGCGATGCACTCTAA

mRNA sequence

CTCTCAATAATGGCGAACAACCCTATCCGTTGTGCACCATCTTCACAAACCGATGAAAAACTCATAGACAGAAATCGAAGAAAGGAAATGGAAGATCTTTTTTCAACACTCAATTCTCTCGTCCCCCATCAAAGCTCAACGGAAGCAAGAACGATGGTGGATGAGCTAGAAGATGCCACAAATTACATAAAAGAATTACAGAAAAACATTGAGAAATTAAAAGAGAAAAACGAGAAGCTAATAATGGGAAAAAATAAAAAAATGGTAGAAAAAGATAGAAGAAGAAAAAGCAAACCCAAATTATTGGAGCATGTTAAAGCTCATGAAGTGGGTTCTTCAGTGCAGATCTTTTTGACTACTGGTTCAGATTATCACTCTATTATTCATCAAATCCTTATCCTCCTCCAAGATAATGGAGCTGAGACCGTCAATGTCAATCAGACAAGGGTCAAAGACCGTGTTTTTCACAGGATTACTGCACAGGTGGATGGAGAAGGAATGGCCCCAAAAGATGGTAAGAAAATTTGTGAGATAGTGAAGAACTTTGTTTCAGAGTATAAAGATGGCGATGCACTCTAA

Coding sequence (CDS)

CTCTCAATAATGGCGAACAACCCTATCCGTTGTGCACCATCTTCACAAACCGATGAAAAACTCATAGACAGAAATCGAAGAAAGGAAATGGAAGATCTTTTTTCAACACTCAATTCTCTCGTCCCCCATCAAAGCTCAACGGAAGCAAGAACGATGGTGGATGAGCTAGAAGATGCCACAAATTACATAAAAGAATTACAGAAAAACATTGAGAAATTAAAAGAGAAAAACGAGAAGCTAATAATGGGAAAAAATAAAAAAATGGTAGAAAAAGATAGAAGAAGAAAAAGCAAACCCAAATTATTGGAGCATGTTAAAGCTCATGAAGTGGGTTCTTCAGTGCAGATCTTTTTGACTACTGGTTCAGATTATCACTCTATTATTCATCAAATCCTTATCCTCCTCCAAGATAATGGAGCTGAGACCGTCAATGTCAATCAGACAAGGGTCAAAGACCGTGTTTTTCACAGGATTACTGCACAGGTGGATGGAGAAGGAATGGCCCCAAAAGATGGTAAGAAAATTTGTGAGATAGTGAAGAACTTTGTTTCAGAGTATAAAGATGGCGATGCACTCTAA

Protein sequence

LSIMANNPIRCAPSSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYIKELQKNIEKLKEKNEKLIMGKNKKMVEKDRRRKSKPKLLEHVKAHEVGSSVQIFLTTGSDYHSIIHQILILLQDNGAETVNVNQTRVKDRVFHRITAQVDGEGMAPKDGKKICEIVKNFVSEYKDGDAL
Homology
[Close]
BLAST of Lsi04G003810 vs. TrEMBL
Match: A0A0A0LUL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G074400 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.1e-56
Identity = 122/192 (63.54%), Postives = 154/192 (80.21%), Query Frame = 1 

Query: 6   NNPIRCAPSSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEA-RTMVDELEDATNYIK 65
           +NPIRC P+ Q++ K ++RNRRKEM+ LFSTLNSL+P+Q+S EA RT+ D+LEDATNYIK
Sbjct: 2   SNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIK 61

Query: 66  ELQKNIEKLKEKNEKLIMGKNKKMVEKDRRRK-----SKPKLLEHVKAHEVGSSVQIFLT 125
           ELQKNI+KLKEK EKL+  +  +  E  RRR+     +KPKL  HVKAH++GSSV++FLT
Sbjct: 62  ELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLT 121

Query: 126 TGSDYHSIIHQILILLQDNGAETVNVNQTRVKDRVFHRITAQVDGEG-MAPKDGKKICEI 185
           TGSDYH  + Q+L LLQDNGAE +NVNQ+   DRVFH+ITAQVDGEG +   DG++ICE 
Sbjct: 122 TGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICET 181

Query: 186 VKNFVSEYKDGD 191
           VK +VSEYKDG+
Sbjct: 182 VKKYVSEYKDGE 193

[Close]
BLAST of Lsi04G003810 vs. TrEMBL
Match: A0A0B2PQP6_GLYSO (Transcription factor bHLH36 OS=Glycine soja GN=glysoja_026898 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.9e-23
Identity = 73/179 (40.78%), Postives = 108/179 (60.34%), Query Frame = 1 

Query: 4   MANNPIRCAPSSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYI 63
           M NNP   + SS+TD K I++NRR  M+DLF  LNS+VPHQSS EA +  D++ +ATNYI
Sbjct: 1   MENNP---SSSSRTDRKFIEQNRRNHMKDLFFKLNSVVPHQSSREAISRPDQIGEATNYI 60

Query: 64  KELQKNIEKLKEKNEKLIMGKNKKMVEKDRRRKSKPKLLEHVKAHEVGSSVQIFLTTGSD 123
           K LQ  +EK+KEK   LI  K  K V  +      P+     K  ++GS++++FL TG D
Sbjct: 61  KNLQIKLEKMKEKKNNLIDIKRSKNVSMNMGLLKSPQF----KIQQMGSTLEVFLITGLD 120

Query: 124 YHSIIHQILILLQDNGAETVNVNQTRVKDRVFHRITAQVDGEGMAPKDGKKICEIVKNF 183
              + ++ + +LQ+ G++ VN + T V++ VFH I  QV   G +     +I E +K +
Sbjct: 121 CQFMFNETVRVLQEEGSDVVNASYTVVENEVFHTIHCQV---GESANGALRISEKLKKY 169

[Close]
BLAST of Lsi04G003810 vs. TrEMBL
Match: V4W8P1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016846mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 70/185 (37.84%), Postives = 108/185 (58.38%), Query Frame = 1 

Query: 4   MANNPIRCAPSSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYI 63
           M NNP     SS+TD K I+RNRR +M+ L+STLNSLVPHQ   EA ++ D+L++AT YI
Sbjct: 1   MENNP----SSSRTDRKTIERNRRNQMKALYSTLNSLVPHQRPMEATSLPDQLDEATKYI 60

Query: 64  KELQKNIEKLKEKNEKLI-MGKNKKMVEKDRRRKSKPKLL-----EHVKAHEVGSSVQIF 123
           K LQ N+E++KE+ E+L+ + K            S   +        ++ HE+GS++++ 
Sbjct: 61  KRLQTNLERMKERKERLMGIEKPDAAAATSSSGNSSGTITTGLRSPQIEIHEMGSALEVV 120

Query: 124 LTTGSDYHSIIHQILILLQDNGAETVNVNQTRVKDRVFHRITAQVDGEGMAPKDGKKICE 183
           LTTG D+  +  + + LL + G E VN +   V+D +FH I +++   G       +I E
Sbjct: 121 LTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISE 180

[Close]
BLAST of Lsi04G003810 vs. TrEMBL
Match: A5C0F4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010916 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 74/180 (41.11%), Postives = 109/180 (60.56%), Query Frame = 1 

Query: 4   MANNPIRCAPSSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYI 63
           M +NP     SS+TD K I+RNRR  M+ L+S LNSLVPHQ+S EA T+ D+L++A NYI
Sbjct: 1   MESNP----SSSRTDRKTIERNRRNHMKSLYSKLNSLVPHQTSREAITLPDQLDEAANYI 60

Query: 64  KELQKNIEKLKEKNEKLIMGKNKKMVEKDRRRKSKPKLLEHVKAHEVGSSVQIFLTTGSD 123
           K LQ+ +EK+KE+ + L MG  +     +       K    +  HE GS++++ L TG D
Sbjct: 61  KRLQEKLEKMKERKDNL-MGFERPNTSPNSGAMVGLK-PPQIDIHEKGSALEVVLITGLD 120

Query: 124 YHSIIHQILILLQDNGAETVNVNQTRVKDRVFHRITAQVDGEGMAPKDGKKICEIVKNFV 183
           +  + ++ + +L + GAE VN + + V D VFH I AQV+G  +      +I E +K FV
Sbjct: 121 FQFMFNETIRVLHEEGAEIVNASFSVVDDTVFHTIHAQVEGPVLG-HGAARISERLKKFV 173

[Close]
BLAST of Lsi04G003810 vs. TrEMBL
Match: A0A067GKY0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029713mg PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-22
Identity = 69/185 (37.30%), Postives = 108/185 (58.38%), Query Frame = 1 

Query: 4   MANNPIRCAPSSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYI 63
           M NNP     SS+TD K I+RNRR +M+ L+STLNS+VPHQ   EA ++ D+L++AT YI
Sbjct: 1   MENNP----SSSRTDRKTIERNRRNQMKALYSTLNSIVPHQRPMEATSLPDQLDEATKYI 60

Query: 64  KELQKNIEKLKEKNEKLI-MGKNKKMVEKDRRRKSKPKLL-----EHVKAHEVGSSVQIF 123
           K LQ N+E++KE+ E+L+ + K            S   +        ++ HE+GS++++ 
Sbjct: 61  KRLQTNLERMKERKERLMGIEKPDAAAATSSSGNSSGTITTGLRSPQIEIHEMGSALEVV 120

Query: 124 LTTGSDYHSIIHQILILLQDNGAETVNVNQTRVKDRVFHRITAQVDGEGMAPKDGKKICE 183
           LTTG D+  +  + + LL + G E VN +   V+D +FH I +++   G       +I E
Sbjct: 121 LTTGLDFQFMFIETIRLLHEEGVEIVNASFNVVEDTIFHTIHSKIGDSGSDHDASARISE 180

[Close]
BLAST of Lsi04G003810 vs. TAIR10
Match: AT4G20970.1 (AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 56/161 (34.78%), Postives = 90/161 (55.90%), Query Frame = 1 

Query: 14  SSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYIKELQKNIEKL 73
           S   D K +++NRR +M+ L+S L SL+PH SSTE  T+ D+L++A NYIK+LQ N+EK 
Sbjct: 11  SRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTEPLTLPDQLDEAANYIKKLQVNVEKK 70

Query: 74  KEKNEKLI----------MGKNKKMVEKDRRRKSKPKLLEHVKAHEVGSSVQIFLTTGSD 133
           +E+   L+          +G +      D    S P+ L  ++  E GS   IFL T  +
Sbjct: 71  RERKRNLVATTTLEKLNSVGSSSVSSSVD---VSVPRKLPKIEIQETGSIFHIFLVTSLE 130

Query: 134 YHSIIHQIL-ILLQDNGAETVNVNQTRVKDRVFHRITAQVD 164
           +  +  +I+ +L ++ GAE  +   + V D VFH +  +V+
Sbjct: 131 HKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVE 168

[Close]
BLAST of Lsi04G003810 vs. TAIR10
Match: AT4G25400.1 (AT4G25400.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-06
Identity = 37/144 (25.69%), Postives = 74/144 (51.39%), Query Frame = 1 

Query: 20  KLIDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYIKELQKNIEKLKEKNEK 79
           K I++ RR+EM  L+++L SL+P +     R+  D+++ A NYI  LQ+NI+ +  K + 
Sbjct: 7   KEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDINSKRDD 66

Query: 80  LIMGKNKKMVEKDRRRKSKPKLLEHVKAHEVGSSVQIFLTTGSDYHSIIHQILILLQDNG 139
           L++   +    +    +   ++  HV        ++I L   S   +    +L +L+++G
Sbjct: 67  LVLLSGRSF--RSSNEQEWNEISNHVVIRPCLVGIEIVL---SILQTPFSSVLQVLREHG 126

Query: 140 AETVNVNQTRVKDRVFHRITAQVD 164
              +    + V DR+ H + A+V+
Sbjct: 127 LYVLGYICSSVNDRLIHTLQAEVN 145

[Close]
BLAST of Lsi04G003810 vs. TAIR10
Match: AT4G25410.1 (AT4G25410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 9.0e-06
Identity = 42/152 (27.63%), Postives = 75/152 (49.34%), Query Frame = 1 

Query: 22  IDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYIKELQKNIEKLKEKNEKLI 81
           I+R RR+EM  LF+TL + +P +     R + D +  A N+IK+ +  I++L  + ++L 
Sbjct: 50  IERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELSARRDELS 109

Query: 82  --MGKNKKMVEKDRRR-----KSKPKLLEHVKAHEVGSSVQIFLTTGSDYHSIIHQILIL 141
              G+  K      +      KS+P  +  V+ H  G  V +   +       + ++L  
Sbjct: 110 RETGQGYKSNPDPGKTGSDVGKSEPATV-MVQPHVSGLEVVVSSNSSGPEALPLSKVLET 169

Query: 142 LQDNGAETVNVNQTRVKDRVFHRITAQVDGEG 167
           +Q+ G E ++   TRV DR+ H I  +V+  G
Sbjct: 170 IQEKGLEVMSSFTTRVNDRLMHTIQVEVNSFG 200

[Close]
BLAST of Lsi04G003810 vs. NCBI nr
Match: gi|659068080|ref|XP_008442634.1| (PREDICTED: transcription factor ORG2-like [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 8.6e-59
Identity = 129/197 (65.48%), Postives = 161/197 (81.73%), Query Frame = 1 

Query: 1   LSIMANNPIRCAPSSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEA-RTMVDELEDA 60
           LSIM+N PIRC P+ Q+D K ++RNRRKEM+ LFSTLNSL+P+ +S EA RT+ D+LEDA
Sbjct: 33  LSIMSN-PIRCQPTPQSDRKFVERNRRKEMKSLFSTLNSLLPNHTSREAPRTVPDQLEDA 92

Query: 61  TNYIKELQKNIEKLKEKNEKLIMGKNKKMVEKD---RRRK-----SKPKLLEHVKAHEVG 120
           TNYIKELQKNI+KLKEK E+L MGKNK   +++   RRR+     +KPKLL  VKAH++G
Sbjct: 93  TNYIKELQKNIQKLKEKKEEL-MGKNKMEEDEEAEGRRRRRFEHETKPKLLLQVKAHQIG 152

Query: 121 SSVQIFLTTGSDYHSIIHQILILLQDNGAETVNVNQTRVKDRVFHRITAQVDGEGMAPKD 180
           SSV++FLTTGSDYH I+ Q+L LLQDNGAE +NVNQ+   DRVFH+ITAQVDGEG+ P D
Sbjct: 153 SSVEVFLTTGSDYHFILQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGIGPGD 212

Query: 181 GKKICEIVKNFVSEYKD 189
           G++IC+ VK FVS+YKD
Sbjct: 213 GERICKTVKKFVSQYKD 227

[Close]
BLAST of Lsi04G003810 vs. NCBI nr
Match: gi|449457739|ref|XP_004146605.1| (PREDICTED: transcription factor bHLH118-like [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 3.1e-56
Identity = 122/192 (63.54%), Postives = 154/192 (80.21%), Query Frame = 1 

Query: 6   NNPIRCAPSSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEA-RTMVDELEDATNYIK 65
           +NPIRC P+ Q++ K ++RNRRKEM+ LFSTLNSL+P+Q+S EA RT+ D+LEDATNYIK
Sbjct: 2   SNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIK 61

Query: 66  ELQKNIEKLKEKNEKLIMGKNKKMVEKDRRRK-----SKPKLLEHVKAHEVGSSVQIFLT 125
           ELQKNI+KLKEK EKL+  +  +  E  RRR+     +KPKL  HVKAH++GSSV++FLT
Sbjct: 62  ELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETKPKLSVHVKAHQIGSSVEVFLT 121

Query: 126 TGSDYHSIIHQILILLQDNGAETVNVNQTRVKDRVFHRITAQVDGEG-MAPKDGKKICEI 185
           TGSDYH  + Q+L LLQDNGAE +NVNQ+   DRVFH+ITAQVDGEG +   DG++ICE 
Sbjct: 122 TGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERICET 181

Query: 186 VKNFVSEYKDGD 191
           VK +VSEYKDG+
Sbjct: 182 VKKYVSEYKDGE 193

[Close]
BLAST of Lsi04G003810 vs. NCBI nr
Match: gi|657983315|ref|XP_008383729.1| (PREDICTED: transcription factor bHLH36-like isoform X2 [Malus domestica])

HSP 1 Score: 117.1 bits (292), Expect = 3.4e-23
Identity = 75/186 (40.32%), Postives = 117/186 (62.90%), Query Frame = 1 

Query: 10  RCAPSSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYIKELQKN 69
           +C  SS+TD K I++NRR +M+ LFS LNSLVPHQ S EA ++ D+L+DA NYIK+LQ N
Sbjct: 3   KCPSSSRTDRKTIEKNRRNQMKALFSKLNSLVPHQRSREA-SLPDQLDDAVNYIKKLQTN 62

Query: 70  IEKLKEKNEKLIMGKNKKMVEKDRRRKSKPKLLEH------VKAHEVGSSVQIFLTTGSD 129
           +EKL+EK ++L MG  K         +S   + E       V+ HE+GS++ + + TG D
Sbjct: 63  LEKLREKKDRL-MGIEKSSHCNAGFGRSGGAITEGLNSSPLVEIHEMGSALGVLMITGLD 122

Query: 130 YHSIIHQILILLQDNGAETVNVNQTRVKDRVFHRITAQVDGEGMAPKDGKKICEIVKNFV 189
           +  + ++ + ++Q+ GA+ VN + + VKD +FH I ++V     A     +I E +K FV
Sbjct: 123 HQFMFNESIRVIQEEGADIVNASFSVVKDTIFHTIHSKVRESAAAGSVAARISERLKKFV 182

[Close]
BLAST of Lsi04G003810 vs. NCBI nr
Match: gi|720013576|ref|XP_010260225.1| (PREDICTED: transcription factor bHLH36-like [Nelumbo nucifera])

HSP 1 Score: 116.3 bits (290), Expect = 5.8e-23
Identity = 67/173 (38.73%), Postives = 109/173 (63.01%), Query Frame = 1 

Query: 14  SSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYIKELQKNIEKL 73
           SS+TD K ++RNRR  M++L+S LNSL+P+ SS E  ++ D+L +A NYIK+LQ+ +E++
Sbjct: 8   SSKTDRKTVERNRRNHMKNLYSELNSLIPNHSSKETMSLPDQLNEAANYIKKLQRKLERM 67

Query: 74  KEKNEKLIMGKNKKMVEKDRRRKSKPKLLEHVKAHEVGSSVQIFLTTGSDYHSIIHQILI 133
           KEK E L MG NK             K   H++ H++GS++ + LT+G D   + ++++ 
Sbjct: 68  KEKKENL-MGINKLSRSISSGMMVGVK-SPHIEIHDMGSALHVVLTSGLDQQFMFYEVVR 127

Query: 134 LLQDNGAETVNVNQTRVKDRVFHRITAQVDGEGMAPKDGKKICEIVKNFVSEY 187
           LL + GA+ VN N + + D +FH + +++ GE M      +I   +K FVSE+
Sbjct: 128 LLHEEGAQIVNANFSIIDDMIFHTVHSEI-GESMHGFGAARISRRLKKFVSEF 177

[Close]
BLAST of Lsi04G003810 vs. NCBI nr
Match: gi|734342362|gb|KHN09998.1| (Transcription factor bHLH36 [Glycine soja])

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-22
Identity = 73/179 (40.78%), Postives = 108/179 (60.34%), Query Frame = 1 

Query: 4   MANNPIRCAPSSQTDEKLIDRNRRKEMEDLFSTLNSLVPHQSSTEARTMVDELEDATNYI 63
           M NNP   + SS+TD K I++NRR  M+DLF  LNS+VPHQSS EA +  D++ +ATNYI
Sbjct: 1   MENNP---SSSSRTDRKFIEQNRRNHMKDLFFKLNSVVPHQSSREAISRPDQIGEATNYI 60

Query: 64  KELQKNIEKLKEKNEKLIMGKNKKMVEKDRRRKSKPKLLEHVKAHEVGSSVQIFLTTGSD 123
           K LQ  +EK+KEK   LI  K  K V  +      P+     K  ++GS++++FL TG D
Sbjct: 61  KNLQIKLEKMKEKKNNLIDIKRSKNVSMNMGLLKSPQF----KIQQMGSTLEVFLITGLD 120

Query: 124 YHSIIHQILILLQDNGAETVNVNQTRVKDRVFHRITAQVDGEGMAPKDGKKICEIVKNF 183
              + ++ + +LQ+ G++ VN + T V++ VFH I  QV   G +     +I E +K +
Sbjct: 121 CQFMFNETVRVLQEEGSDVVNASYTVVENEVFHTIHCQV---GESANGALRISEKLKKY 169

The following BLAST results are available for this feature:
BLAST of Lsi04G003810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G003810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUL3_CUCSA2.1e-5663.54Uncharacterized protein OS=Cucumis sativus GN=Csa_1G074400 PE=4 SV=1[more]
A0A0B2PQP6_GLYSO6.9e-2340.78Transcription factor bHLH36 OS=Glycine soja GN=glysoja_026898 PE=4 SV=1[more]
V4W8P1_9ROSI2.0e-2237.84Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016846mg PE=4 SV=1[more]
A5C0F4_VITVI2.6e-2241.11Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010916 PE=4 SV=1[more]
A0A067GKY0_CITSI3.4e-2237.30Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029713mg PE=4 SV=1[more]
BLAST of Lsi04G003810 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G20970.11.7e-1734.78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G25400.16.9e-0625.69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G25410.19.0e-0627.63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Lsi04G003810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068080|ref|XP_008442634.1|8.6e-5965.48PREDICTED: transcription factor ORG2-like [Cucumis melo][more]
gi|449457739|ref|XP_004146605.1|3.1e-5663.54PREDICTED: transcription factor bHLH118-like [Cucumis sativus][more]
gi|657983315|ref|XP_008383729.1|3.4e-2340.32PREDICTED: transcription factor bHLH36-like isoform X2 [Malus domestica][more]
gi|720013576|ref|XP_010260225.1|5.8e-2338.73PREDICTED: transcription factor bHLH36-like [Nelumbo nucifera][more]
gi|734342362|gb|KHN09998.1|1.0e-2240.78Transcription factor bHLH36 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR015660MASH1/Ascl1a-like
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G003810.1Lsi04G003810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 20..81
score: 4.5
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 20..67
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 20..72
score: 0
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 14..66
score: 10
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 20..82
score: 4.32
IPR015660Achaete-scute transcription factor-relatedPANTHERPTHR13935ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATEDcoord: 14..168
score: 2.7
NoneNo IPR availableunknownCoilCoilcoord: 49..83
scor
NoneNo IPR availablePANTHERPTHR13935:SF46BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEINcoord: 14..168
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G003810Cla010220Watermelon (97103) v1lsiwmB312
Lsi04G003810ClCG05G023890Watermelon (Charleston Gray)lsiwcgB283
Lsi04G003810Cla97C05G105900Watermelon (97103) v2lsiwmbB284
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G003810Silver-seed gourdcarlsiB048
Lsi04G003810Silver-seed gourdcarlsiB091
Lsi04G003810Silver-seed gourdcarlsiB217
Lsi04G003810Cucumber (Chinese Long) v3cuclsiB061
Lsi04G003810Cucumber (Chinese Long) v3cuclsiB059
Lsi04G003810Cucumber (Chinese Long) v3cuclsiB393
Lsi04G003810Watermelon (97103) v2lsiwmbB281
Lsi04G003810Wax gourdlsiwgoB375
Lsi04G003810Wax gourdlsiwgoB380
Lsi04G003810Wax gourdlsiwgoB408
Lsi04G003810Bottle gourd (USVL1VR-Ls)lsilsiB101
Lsi04G003810Cucumber (Gy14) v1cgylsiB154
Lsi04G003810Cucumber (Gy14) v1cgylsiB339
Lsi04G003810Cucumber (Gy14) v1cgylsiB465
Lsi04G003810Cucurbita maxima (Rimu)cmalsiB062
Lsi04G003810Cucurbita maxima (Rimu)cmalsiB214
Lsi04G003810Cucurbita maxima (Rimu)cmalsiB379
Lsi04G003810Cucurbita maxima (Rimu)cmalsiB435
Lsi04G003810Cucurbita maxima (Rimu)cmalsiB678
Lsi04G003810Cucurbita moschata (Rifu)cmolsiB049
Lsi04G003810Cucurbita moschata (Rifu)cmolsiB364
Lsi04G003810Cucurbita moschata (Rifu)cmolsiB427
Lsi04G003810Cucurbita moschata (Rifu)cmolsiB671
Lsi04G003810Cucurbita pepo (Zucchini)cpelsiB032
Lsi04G003810Cucurbita pepo (Zucchini)cpelsiB360
Lsi04G003810Cucurbita pepo (Zucchini)cpelsiB461
Lsi04G003810Wild cucumber (PI 183967)cpilsiB053
Lsi04G003810Wild cucumber (PI 183967)cpilsiB055
Lsi04G003810Wild cucumber (PI 183967)cpilsiB372
Lsi04G003810Cucumber (Chinese Long) v2culsiB053
Lsi04G003810Cucumber (Chinese Long) v2culsiB056
Lsi04G003810Cucumber (Chinese Long) v2culsiB368
Lsi04G003810Melon (DHL92) v3.5.1lsimeB281
Lsi04G003810Melon (DHL92) v3.5.1lsimeB287
Lsi04G003810Melon (DHL92) v3.5.1lsimeB294
Lsi04G003810Watermelon (Charleston Gray)lsiwcgB281
Lsi04G003810Watermelon (Charleston Gray)lsiwcgB293
Lsi04G003810Watermelon (97103) v1lsiwmB328
Lsi04G003810Watermelon (97103) v1lsiwmB341
Lsi04G003810Cucumber (Gy14) v2cgyblsiB048
Lsi04G003810Cucumber (Gy14) v2cgyblsiB337
Lsi04G003810Melon (DHL92) v3.6.1lsimedB297
Lsi04G003810Melon (DHL92) v3.6.1lsimedB302
Lsi04G003810Melon (DHL92) v3.6.1lsimedB308