Lsi04G003560 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G003560
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr04 : 3568056 .. 3571872 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAAGTAATTATCTGATTTGATTTTCTTAACATCAAGACAGTAGTTTTCGACCGCCAAGCTGATTCGTTGTGGTTCATGTCAAATGTATTGAAACTCACATGATCCATTCCATTAAGAATTGGCTTTATGAGAAATTAAACATTCAATGATTCACATGAACTTCAAGATTTATGGGGATGACTTTGGTAGCCAAGTTAATGCTTCAAATAACATAAGAATCATCGAATGTATTAGAAGATAGATTATTACAAGCCATATTTGGTATACGAGTATCCACTTCAAGAAAAACCAGGAAAAAAAATACCAATAAACAATAGGGGTTGAGTTATTGAAGTGAGATGGACCTATTCCTCAGAGGACTTAACACAGGATAAGTAATTTGAAGGTGGCCCCAATATGTTGCTTAATCCAAGATGGTGTGTGTTTTTTTATTGTTGAGGTGTTGAGAGTCAAGGTCACTTGCCTTTTTAGTTACTACTGCTTGAACACCCTCTTTAGAAATATTTCTACAAATTGGGTTTGGTTATGCCACTAAGGATAATATCAGACTTATGTGTGGGCAAAGGGTTAGAAAACACAGCAGAACTCTCTTGTTGAATGGAATAAGCGATTAGTCGTGGATCTTTGGCTAGATCCCCATGATATAATAAGGAAAAGGAAAAGGGTGGAACTATAGGCCTTCCAAAATTTATAGCTTATTATTGGCTAACTAGTTTGTATTTGATTAAATTTGCTTCTATTCTGACAATGTGAACCATGTTCAGATATGATCAGCCTGAATTGACAATTAATTGCAGAATGCAGATATAGACTAGCAAGAATGTTTCTTGAGAATGAGGTGCACCAAATCTAGTGCAGAGGATCCTTTGTCAAAGTAAGAGATCAAAATCAATGTGTTAAAGATGGTGAAATGAACATAATTCTTGTAGCAGAATAAAATTATGACCAAATATTCTTCCCTTCCCATTATCATGAGACATGAAGTCTGTTTGTTTTATGCTTTTGATATCAGCTTATTTTGAATCAGGGTATCAAACATTCAACATTGCCACACCTATCTAATCTCTCAAGTTTTGTCTTCAAAGTGGAAGGAGATAACTCTTTGCATAGAAGGTTTGAATATTGTGCTTATTCAGTTTATCATTTTAATTACCTTGACCATTTTTATACAAGCTGAATGTGTGATGGATTATGGAGGATAGCAAAACAACTAAATTAACCAATTTAAACAGTGTATCCTTCTTGCAATCTTATTCGCATTCCATCATTTGAATTCTCCTTTTCCTCTTAATTATTCAATAATCTGGATTAAGGACTGGTATGTGATAGGGATGATCAGGGGAAATTTTGGATTGCTACAAATGAATTGATGTTGGACATCGTAAGTGAACGTCATTTACAACTCGAATGTTGACATTTTCCACTTGATGAAATGGTGGAACCTATGAAGCATACATATTTCAAGAATCAGTATCGGATACGTATCAGATATTGATACTCCCAAATACTTCCCAAATATGTATCTGATATGCAATTTGGCGAATCTGTTTTCTTTTTTTAAAGAAATATATATCGGATACGTGTGTCCCTCCTTTCAAATATGTGAATGAGACACAATGAGCCTTTATAAAGAAAATAAAAAATAAAAAATAAAAATCAAACCCGAGAATTATCTAATCTTCATTGTCACGTCTGAGTCCCTACAAAGTCACGCAAAAAATAATTCACTTGAATATCTTCAACAATTCAGCAAAGTTCTTCGTTTATTTTCATACTTCTCCCTCTAATCTTCTTCTTCTCAAATCAATCCGACTTTGGTGCGCTACTAACCTTTTCTATTGTATTCTAATTTTTGTTGACTATTGTATTTCAATATCTTTGATGTTGTTTTTTGTATTGTATTTTGTACTATTGTAATTAACTTGATGTTTTATGTTTTTTAGTGAATTACATTTAGTATCTTCATGTTAAATTTACATATATCTTAGATTTTTTTTTTTTAAAAAAAAAAGAAAAGAAAACGTATAGTATCCATATCCTAGTTTTTTGAAAATTGACGTATTATCTATATCCATATCTGTGTCTGTGCTTCATAGGGTGGAAGAGATGCTTACAACTAGTTGAATATGATGCCATTTTCACAATCATGGAACCAACCTACTGAGTTATAAATCAATCTTATTTAACTGCAAGAATAGTAAGCTTGACAATTAGGTTATGTTCTTCATTTTGTTTGCATCGGTGAAAATTAAAGTGTCGATGTTGCTAACTTGAATTTAGTTCAACAGACATAAAATAGTACTATTGATTAAAAGATCAAAGGTTTAAGTCATCCACTTTACATATTGTTGAGCTAAAAAAAATAACATTGTCAAAGAAGATGTCGAGTATCAATCCTATAATAATATCAATAATTAATGACATTTTATTGTATTTCATTTGTTTCATGAAATTTTTACAATATAATTGAAATGTACATTTTATTATTAATTTCATATGGTTGTTGAAAATTTTACAGTATAATAAAAATGTCAAATTTTCCTTTCAATTTCCCATTGAGGGTGGGTCCTCCTATCTTTCGTTGCTTCCATCTGTAAGATCCAAGAAACCAGCCTCAACAATTAATTAACTACGAGATGTCTTATCACTATGGCCCAACGCGTCACCCAATCTTATCCACTTGACTTTAATAAATTTGCATATTTTGACTTTTTTTTTTTTTTTTTTTTTTTTTATTGAGAGAACAAGAAAGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTCTATTGAGAGAACAAGAAAGATTAGATTGGAACTTTTGAAATCAGTATTCCCAGTAATGTCATCTCTCTGTTGCTTAGAATATAGAATCCACTCTTCAAACACAGTCACCATCTGGAAAGCGATGGAAGATGTTAGATTTTACATTTTCAAATGGCCAATTTTTACTGAACACAGAAACTAATTAAGATTTGTATTTAAGTGCTTAATCTGATGTCATAACCAATGATAGGATTACCAAACTTTTCCCCACATTTCTAACAACTTTATAGCTTTTTCTCAGCCAAACTGAATGAGAGGAGAGAAAACAAAAGAGAGAAATTCAATAAATTTGTGATGGCTGCTTTTTACATATTTTCAATGATGCTTCTGCTGGCTTCAACATATACATAGCAGCAACTGTCCCTACAAAACCATCTGCTTTTCACTGAGATCTTAGCTTATTTAGCTCTGCTTACAAAATGAAAGAAGGATTCACACTTCTTATCACTCCAGAAAAGAAATGAAGAGAAGTCAAAATATGGAGAATGTGACCCAAAACAAAACGGGAAGGGAGGGAGTGAAATAAAATGTGGGATCGAAATGAAGAGACGAGGATCCACAACTGCTGAAATCCATCAACTGCATACAGAGATACACTGCGTCGGTGAACAGCTTAAGACTACTCGGAAAATTGGTAATTGTCAAGTTTTGAAGCAGCATGGTTATCCAAAAACCATGCCAACTTTCCTTTCCTTGGCTGTACCAACCTTGCAGGTAGGAGTGGGCAGTCTGCTCCTACATCATCGATCGCCAAATGTACGGTCTCTGCTTTGTTTTCACCTGTCACAACGATCGCCACATTTGATGCAGAGTTGATCACAGGCAATGTGAAGGTGATTCTCTCTGGAGGAGGTTTCGGAGAATCGGTTATGAAGGCAACCCATTCATCTTTCTCCTCAAGCACTGAGTGA

mRNA sequence

ATGCAGAAGGTATCAAACATTCAACATTGCCACACCTATCTAATCTCTCAAGTTTTGTCTTCAAAGTGGAAGGAGATAACTCTTTGCATAGAAGGACTGGTATGTGATAGGGATGATCAGGGGAAATTTTGGATTGCTACAAATGAATTGATGTTGGACATCAGAACAAGAAAGATTAGATTGGAACTTTTGAAATCAGTATTCCCAGTAATGTCATCTCTCTGTTGCTTAGAATATAGAATCCACTCTTCAAACACAGTCACCATCTGGAAAGCGATGGAAGATAAAAGAAATGAAGAGAAGTCAAAATATGGAGAATGTGACCCAAAACAAAACGGGAAGGGAGGGAGTGAAATAAAATGTGGGATCGAAATGAAGAGACGAGGATCCACAACTGCTGAAATCCATCAACTGCATACAGAGATACACTGCGTCGGTGAACAGCTTAAGACTACTCGGAAAATTGCATGGTTATCCAAAAACCATGCCAACTTTCCTTTCCTTGGCTGTACCAACCTTGCAGGTAGGAGTGGGCAGTCTGCTCCTACATCATCGATCGCCAAATGTACGGTCTCTGCTTTGTTTTCACCTGTCACAACGATCGCCACATTTGATGCAGAGTTGATCACAGGCAATGTGAAGGTGATTCTCTCTGGAGGAGGTTTCGGAGAATCGGTTATGAAGGCAACCCATTCATCTTTCTCCTCAAGCACTGAGTGA

Coding sequence (CDS)

ATGCAGAAGGTATCAAACATTCAACATTGCCACACCTATCTAATCTCTCAAGTTTTGTCTTCAAAGTGGAAGGAGATAACTCTTTGCATAGAAGGACTGGTATGTGATAGGGATGATCAGGGGAAATTTTGGATTGCTACAAATGAATTGATGTTGGACATCAGAACAAGAAAGATTAGATTGGAACTTTTGAAATCAGTATTCCCAGTAATGTCATCTCTCTGTTGCTTAGAATATAGAATCCACTCTTCAAACACAGTCACCATCTGGAAAGCGATGGAAGATAAAAGAAATGAAGAGAAGTCAAAATATGGAGAATGTGACCCAAAACAAAACGGGAAGGGAGGGAGTGAAATAAAATGTGGGATCGAAATGAAGAGACGAGGATCCACAACTGCTGAAATCCATCAACTGCATACAGAGATACACTGCGTCGGTGAACAGCTTAAGACTACTCGGAAAATTGCATGGTTATCCAAAAACCATGCCAACTTTCCTTTCCTTGGCTGTACCAACCTTGCAGGTAGGAGTGGGCAGTCTGCTCCTACATCATCGATCGCCAAATGTACGGTCTCTGCTTTGTTTTCACCTGTCACAACGATCGCCACATTTGATGCAGAGTTGATCACAGGCAATGTGAAGGTGATTCTCTCTGGAGGAGGTTTCGGAGAATCGGTTATGAAGGCAACCCATTCATCTTTCTCCTCAAGCACTGAGTGA

Protein sequence

MQKVSNIQHCHTYLISQVLSSKWKEITLCIEGLVCDRDDQGKFWIATNELMLDIRTRKIRLELLKSVFPVMSSLCCLEYRIHSSNTVTIWKAMEDKRNEEKSKYGECDPKQNGKGGSEIKCGIEMKRRGSTTAEIHQLHTEIHCVGEQLKTTRKIAWLSKNHANFPFLGCTNLAGRSGQSAPTSSIAKCTVSALFSPVTTIATFDAELITGNVKVILSGGGFGESVMKATHSSFSSSTE
Homology
[Close]
BLAST of Lsi04G003560 vs. TrEMBL
Match: M7YA95_TRIUA (Putative 6-phosphogluconolactonase 2 OS=Triticum urartu GN=TRIUR3_01707 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.4e-10
Identity = 44/75 (58.67%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 156 AWLSKNHANFPFLGCTNLAGR-SGQSAPT--SSIAKCTVSALFSPVTTIATFDAELITGN 215
           A L KNH  F  +G T LAGR +G S P+  S  A+CT  AL +PV  IA FD E +TG 
Sbjct: 293 AALCKNHTGFSCVGWTVLAGRGTGASGPSLLSGTARCTPFALPTPVAWIAMFDVEFVTGR 352

Query: 216 VKVILSGGGFGESVM 228
           VKVILSGGG+GESVM
Sbjct: 353 VKVILSGGGYGESVM 367

[Close]
BLAST of Lsi04G003560 vs. TrEMBL
Match: C0P9X4_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 43/84 (51.19%), Postives = 49/84 (58.33%), Query Frame = 1 

Query: 152 TRKIAWLSKNHANFPFLGCTNLAGRSGQSAPTSSIAKCTVSALFSPVTTIATFDAELITG 211
           ++  A LS N  N P        G        S  A CT +A  +PVTTIAT+  ELITG
Sbjct: 26  SKDTAALSVNQVNSPSCSTAISTGSRSDEVCLSESAFCTAAAFPAPVTTIATYADELITG 85

Query: 212 NVKVILSGGGFGESVMKATHSSFS 236
           NV VILSGGGFGES+M  TH SFS
Sbjct: 86  NVNVILSGGGFGESLMYVTHLSFS 109

[Close]
BLAST of Lsi04G003560 vs. NCBI nr
Match: gi|473821349|gb|EMS47003.1| (putative 6-phosphogluconolactonase 2 [Triticum urartu])

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 44/75 (58.67%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 156 AWLSKNHANFPFLGCTNLAGR-SGQSAPT--SSIAKCTVSALFSPVTTIATFDAELITGN 215
           A L KNH  F  +G T LAGR +G S P+  S  A+CT  AL +PV  IA FD E +TG 
Sbjct: 293 AALCKNHTGFSCVGWTVLAGRGTGASGPSLLSGTARCTPFALPTPVAWIAMFDVEFVTGR 352

Query: 216 VKVILSGGGFGESVM 228
           VKVILSGGG+GESVM
Sbjct: 353 VKVILSGGGYGESVM 367

[Close]
BLAST of Lsi04G003560 vs. NCBI nr
Match: gi|223973563|gb|ACN30969.1| (unknown [Zea mays])

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 43/84 (51.19%), Postives = 49/84 (58.33%), Query Frame = 1 

Query: 152 TRKIAWLSKNHANFPFLGCTNLAGRSGQSAPTSSIAKCTVSALFSPVTTIATFDAELITG 211
           ++  A LS N  N P        G        S  A CT +A  +PVTTIAT+  ELITG
Sbjct: 26  SKDTAALSVNQVNSPSCSTAISTGSRSDEVCLSESAFCTAAAFPAPVTTIATYADELITG 85

Query: 212 NVKVILSGGGFGESVMKATHSSFS 236
           NV VILSGGGFGES+M  TH SFS
Sbjct: 86  NVNVILSGGGFGESLMYVTHLSFS 109

The following BLAST results are available for this feature:
BLAST of Lsi04G003560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G003560 vs. TrEMBL
Match NameE-valueIdentityDescription
M7YA95_TRIUA8.4e-1058.67Putative 6-phosphogluconolactonase 2 OS=Triticum urartu GN=TRIUR3_01707 PE=4 SV=... [more]
C0P9X4_MAIZE1.1e-0951.19Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
BLAST of Lsi04G003560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi04G003560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|473821349|gb|EMS47003.1|1.2e-0958.67putative 6-phosphogluconolactonase 2 [Triticum urartu][more]
gi|223973563|gb|ACN30969.1|1.6e-0951.19unknown [Zea mays][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G003560.1Lsi04G003560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G003560Bottle gourd (USVL1VR-Ls)lsilsiB101
Lsi04G003560Bottle gourd (USVL1VR-Ls)lsilsiB138
Lsi04G003560Bottle gourd (USVL1VR-Ls)lsilsiB155
Lsi04G003560Cucumber (Gy14) v1cgylsiB154
Lsi04G003560Cucumber (Gy14) v1cgylsiB465
Lsi04G003560Cucurbita maxima (Rimu)cmalsiB058
Lsi04G003560Cucurbita maxima (Rimu)cmalsiB123
Lsi04G003560Cucurbita maxima (Rimu)cmalsiB379
Lsi04G003560Cucurbita maxima (Rimu)cmalsiB678
Lsi04G003560Cucurbita moschata (Rifu)cmolsiB114
Lsi04G003560Cucurbita moschata (Rifu)cmolsiB364
Lsi04G003560Cucurbita moschata (Rifu)cmolsiB671
Lsi04G003560Cucurbita pepo (Zucchini)cpelsiB032
Lsi04G003560Cucurbita pepo (Zucchini)cpelsiB360
Lsi04G003560Wild cucumber (PI 183967)cpilsiB053
Lsi04G003560Wild cucumber (PI 183967)cpilsiB372
Lsi04G003560Cucumber (Chinese Long) v2culsiB053
Lsi04G003560Cucumber (Chinese Long) v2culsiB368
Lsi04G003560Melon (DHL92) v3.5.1lsimeB281
Lsi04G003560Melon (DHL92) v3.5.1lsimeB287
Lsi04G003560Melon (DHL92) v3.5.1lsimeB294
Lsi04G003560Watermelon (Charleston Gray)lsiwcgB281
Lsi04G003560Watermelon (Charleston Gray)lsiwcgB283
Lsi04G003560Watermelon (Charleston Gray)lsiwcgB293
Lsi04G003560Watermelon (97103) v1lsiwmB298
Lsi04G003560Watermelon (97103) v1lsiwmB312
Lsi04G003560Watermelon (97103) v1lsiwmB328
Lsi04G003560Watermelon (97103) v1lsiwmB341
Lsi04G003560Cucumber (Gy14) v2cgyblsiB048
Lsi04G003560Cucumber (Gy14) v2cgyblsiB337
Lsi04G003560Melon (DHL92) v3.6.1lsimedB297
Lsi04G003560Melon (DHL92) v3.6.1lsimedB302
Lsi04G003560Silver-seed gourdcarlsiB091
Lsi04G003560Silver-seed gourdcarlsiB217
Lsi04G003560Silver-seed gourdcarlsiB357
Lsi04G003560Silver-seed gourdcarlsiB539
Lsi04G003560Cucumber (Chinese Long) v3cuclsiB059
Lsi04G003560Cucumber (Chinese Long) v3cuclsiB393
Lsi04G003560Watermelon (97103) v2lsiwmbB281
Lsi04G003560Watermelon (97103) v2lsiwmbB284
Lsi04G003560Watermelon (97103) v2lsiwmbB294
Lsi04G003560Watermelon (97103) v2lsiwmbB310
Lsi04G003560Wax gourdlsiwgoB375
Lsi04G003560Wax gourdlsiwgoB380