Lsi04G001950 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G001950
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Location	chr04 : 2068448 .. 2068654 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACAAGTACGAGAAGGAGAATTTGGCCGCAAAATACCTAGAAGGGAGGCCGAGATCTTACCCCGCCGACTGGTACTCTAAACTCGCCGCTCTCACCGCCGGCCACTCCCTCGCCTGCGACTTCGGCACCGGAAACGGCCAAGCCGCTCTCGGCGTTAGTCTTTTCATCCTTCGAATTGATCTAAATACGCGATCTCCATGA

mRNA sequence

ATGGCGGACAAGTACGAGAAGGAGAATTTGGCCGCAAAATACCTAGAAGGGAGGCCGAGATCTTACCCCGCCGACTGGTACTCTAAACTCGCCGCTCTCACCGCCGGCCACTCCCTCGCCTGCGACTTCGGCACCGGAAACGGCCAAGCCGCTCTCGGCGTTAGTCTTTTCATCCTTCGAATTGATCTAAATACGCGATCTCCATGA

Coding sequence (CDS)

ATGGCGGACAAGTACGAGAAGGAGAATTTGGCCGCAAAATACCTAGAAGGGAGGCCGAGATCTTACCCCGCCGACTGGTACTCTAAACTCGCCGCTCTCACCGCCGGCCACTCCCTCGCCTGCGACTTCGGCACCGGAAACGGCCAAGCCGCTCTCGGCGTTAGTCTTTTCATCCTTCGAATTGATCTAAATACGCGATCTCCATGA

Protein sequence

MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVSLFILRIDLNTRSP

Homology

[Close]

BLAST of Lsi04G001950 vs. TrEMBL
Match: A0A0A0KUM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611730 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-21
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 1  MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          MADKYEKENLA KYLEGRPRSYPA+WYS+LAALTAGHSLACDFGTGNGQAALGV+
Sbjct: 1  MADKYEKENLAEKYLEGRPRSYPAEWYSRLAALTAGHSLACDFGTGNGQAALGVA 55

[Close]

BLAST of Lsi04G001950 vs. TrEMBL
Match: D7T1I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01530 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-08
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1


Query: 1  MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          MA  ++K+  A  YL+ RP +YP+ WYSKLAALT  HSLA D GTGNGQAALGV+
Sbjct: 1  MAGLFDKQ--AEIYLDARP-NYPSHWYSKLAALTPHHSLAWDVGTGNGQAALGVA 52

[Close]

BLAST of Lsi04G001950 vs. TrEMBL
Match: V4JWS9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011654mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.5e-08
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 8  ENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVSLFI 59
          + LA  Y   RPR YP DW++KLAA T  H LA D GTGNGQAA+GVS+F+
Sbjct: 6  DKLADAYQNARPR-YPIDWFTKLAARTGQHKLAWDVGTGNGQAAIGVSMFL 55

[Close]

BLAST of Lsi04G001950 vs. TrEMBL
Match: A5BFG4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039111 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.5e-08
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 1  MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          MA  ++K+  A  YL+ RP +YP  WYSKLAALT  HSLA D GTGNGQAALGV+
Sbjct: 1  MAGLFDKQ--AEIYLDARP-NYPPHWYSKLAALTPHHSLAWDVGTGNGQAALGVA 52

[Close]

BLAST of Lsi04G001950 vs. TrEMBL
Match: V4MF65_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026009mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-07
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1


Query: 8  ENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          +N A  YL+ RP +YPADWYSKLAAL+  H LA D GTGNGQAA+G++
Sbjct: 6  DNQADIYLDARP-TYPADWYSKLAALSHRHHLAWDAGTGNGQAAIGIA 52

[Close]

BLAST of Lsi04G001950 vs. TAIR10
Match: AT4G22530.1 (AT4G22530.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-10
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 14 YLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          YL+ RP +YPADWYSKLAAL+  H+LA D GTGNGQAA+G++
Sbjct: 12 YLDARP-TYPADWYSKLAALSHRHNLAWDAGTGNGQAAIGIA 52

[Close]

BLAST of Lsi04G001950 vs. TAIR10
Match: AT1G55450.2 (AT1G55450.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-10
Identity = 31/52 (59.62%), Postives = 35/52 (67.31%), Query Frame = 1


Query: 8  ENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVSLFIL 60
          + LA  Y   RPR YP DW++KLAA T  H  A D GTGNGQAA+GVS F L
Sbjct: 6  DKLADAYQNARPR-YPIDWFTKLAARTGQHKSAWDVGTGNGQAAIGVSFFHL 56

[Close]

BLAST of Lsi04G001950 vs. TAIR10
Match: AT3G54150.1 (AT3G54150.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-09
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 1  MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGV 55
          MA   EKE  A  YL+ RPR YP DW+ K+AA T  H  A D GTGNGQAA+G+
Sbjct: 1  MAALSEKE--AEAYLDARPR-YPIDWFKKIAARTQDHKFAWDVGTGNGQAAIGL 51

[Close]

BLAST of Lsi04G001950 vs. TAIR10
Match: AT5G10830.1 (AT5G10830.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-08
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1


Query: 1  MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          MA  ++K+  A  YL+ RP +YP++W+SKLA LT  H LA D  TGNGQAAL V+
Sbjct: 1  MAGLFDKQ--ADLYLDARP-NYPSEWFSKLADLTDHHGLAWDAATGNGQAALAVA 52

[Close]

BLAST of Lsi04G001950 vs. TAIR10
Match: AT3G61210.1 (AT3G61210.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 5.8e-08
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 11 AAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVSLFILRI 62
          A +YL  RP+ YP  WY  LA  T+ H +A D GTGNGQAA+GV+ +  ++
Sbjct: 12 ADEYLNARPK-YPTIWYKVLAGRTSNHKVAWDVGTGNGQAAIGVAEYYQKV 61

[Close]

BLAST of Lsi04G001950 vs. NCBI nr
Match: gi|449434550|ref|XP_004135059.1| (PREDICTED: putative methyltransferase DDB_G0268948 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-21
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 1  MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          MADKYEKENLA KYLEGRPRSYPA+WYS+LAALTAGHSLACDFGTGNGQAALGV+
Sbjct: 1  MADKYEKENLAEKYLEGRPRSYPAEWYSRLAALTAGHSLACDFGTGNGQAALGVA 55

[Close]

BLAST of Lsi04G001950 vs. NCBI nr
Match: gi|659091729|ref|XP_008446700.1| (PREDICTED: putative methyltransferase DDB_G0268948 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 1  MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          MADKYEKENLA KYLEGRPRSYPA+WYSKLAALTAGHSLACDFGTGNGQAALG +
Sbjct: 1  MADKYEKENLAEKYLEGRPRSYPAEWYSKLAALTAGHSLACDFGTGNGQAALGAA 55

[Close]

BLAST of Lsi04G001950 vs. NCBI nr
Match: gi|225436027|ref|XP_002274567.1| (PREDICTED: putative methyltransferase DDB_G0268948 [Vitis vinifera])

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-08
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1


Query: 1  MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          MA  ++K+  A  YL+ RP +YP+ WYSKLAALT  HSLA D GTGNGQAALGV+
Sbjct: 1  MAGLFDKQ--AEIYLDARP-NYPSHWYSKLAALTPHHSLAWDVGTGNGQAALGVA 52

[Close]

BLAST of Lsi04G001950 vs. NCBI nr
Match: gi|470127578|ref|XP_004299745.1| (PREDICTED: putative methyltransferase DDB_G0268948 [Fragaria vesca subsp. vesca])

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-08
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1


Query: 1  MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          MA  ++K+  A  Y+E RP +YP +WYSKLAALT  HSLA D GTGNGQAALG+S
Sbjct: 1  MAGLFDKQ--AEIYVEARP-TYPKEWYSKLAALTPQHSLAWDAGTGNGQAALGLS 52

[Close]

BLAST of Lsi04G001950 vs. NCBI nr
Match: gi|743934139|ref|XP_011011392.1| (PREDICTED: uncharacterized protein LOC105115977 isoform X1 [Populus euphratica])

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-08
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 1  MADKYEKENLAAKYLEGRPRSYPADWYSKLAALTAGHSLACDFGTGNGQAALGVS 56
          MA+ Y+K+  AA YL+ RPR YP++W+S LA+LT  HSLA D GTGNGQAA+ VS
Sbjct: 1  MAELYDKQ--AAIYLDARPR-YPSEWFSMLASLTPDHSLAWDAGTGNGQAAIDVS 52

The following BLAST results are available for this feature:

BLAST of Lsi04G001950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G001950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUM9_CUCSA	1.0e-21	92.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611730 PE=4 SV=1	[more]
D7T1I6_VITVI	5.0e-08	63.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01530 PE=4 SV=...	[more]
V4JWS9_EUTSA	6.5e-08	60.78	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011654mg PE=4 SV=1	[more]
A5BFG4_VITVI	8.5e-08	63.64	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039111 PE=4 SV=1	[more]
V4MF65_EUTSA	1.1e-07	64.58	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026009mg PE=4 SV=1	[more]

BLAST of Lsi04G001950 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G22530.1	1.3e-10	69.05	S-adenosyl-L-methionine-dependent methyltransferases superfamily pro...	[more]
AT1G55450.2	3.6e-10	59.62	S-adenosyl-L-methionine-dependent methyltransferases superfamily pro...	[more]
AT3G54150.1	3.1e-09	57.41	S-adenosyl-L-methionine-dependent methyltransferases superfamily pro...	[more]
AT5G10830.1	2.0e-08	54.55	S-adenosyl-L-methionine-dependent methyltransferases superfamily pro...	[more]
AT3G61210.1	5.8e-08	49.02	S-adenosyl-L-methionine-dependent methyltransferases superfamily pro...	[more]

BLAST of Lsi04G001950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434550\|ref\|XP_004135059.1\|	1.5e-21	92.73	PREDICTED: putative methyltransferase DDB_G0268948 [Cucumis sativus]	[more]
gi\|659091729\|ref\|XP_008446700.1\|	1.9e-21	92.73	PREDICTED: putative methyltransferase DDB_G0268948 [Cucumis melo]	[more]
gi\|225436027\|ref\|XP_002274567.1\|	7.1e-08	63.64	PREDICTED: putative methyltransferase DDB_G0268948 [Vitis vinifera]	[more]
gi\|470127578\|ref\|XP_004299745.1\|	7.1e-08	63.64	PREDICTED: putative methyltransferase DDB_G0268948 [Fragaria vesca subsp. vesca]	[more]
gi\|743934139\|ref\|XP_011011392.1\|	7.1e-08	61.82	PREDICTED: uncharacterized protein LOC105115977 isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005768	endosome
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity
molecular_function	GO:0008168	methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G001950.1	Lsi04G001950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10108	METHYLTRANSFERASE	coord: 14..55 score: 6.3
None	No IPR available	PANTHER	PTHR10108:SF781	SUBFAMILY NOT NAMED	coord: 14..55 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G001950	Csa5G611730	Cucumber (Chinese Long) v2	culsiB368
Lsi04G001950	CSPI05G25860	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G001950	Cucsa.283020	Cucumber (Gy14) v1	cgylsiB465
Lsi04G001950	CmaCh04G014630	Cucurbita maxima (Rimu)	cmalsiB669
Lsi04G001950	CmoCh04G015340	Cucurbita moschata (Rifu)	cmolsiB660
Lsi04G001950	Cla020449	Watermelon (97103) v1	lsiwmB312
Lsi04G001950	MELO3C012305	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G001950	ClCG05G022180	Watermelon (Charleston Gray)	lsiwcgB283
Lsi04G001950	MELO3C012305.2	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G001950	Cla97C05G103940	Watermelon (97103) v2	lsiwmbB284
Lsi04G001950	Bhi07G000581	Wax gourd	lsiwgoB384
Lsi04G001950	Cp4.1LG01g14040	Cucurbita pepo (Zucchini)	cpelsiB352
Lsi04G001950	CsGy5G025340	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G001950	Carg01878	Silver-seed gourd	carlsiB767

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G001950	Cucumber (Gy14) v1	cgylsiB453
Lsi04G001950	Cucurbita maxima (Rimu)	cmalsiB283
Lsi04G001950	Cucurbita maxima (Rimu)	cmalsiB379
Lsi04G001950	Cucurbita moschata (Rifu)	cmolsiB272
Lsi04G001950	Cucurbita moschata (Rifu)	cmolsiB364
Lsi04G001950	Cucurbita moschata (Rifu)	cmolsiB677
Lsi04G001950	Cucurbita pepo (Zucchini)	cpelsiB032
Lsi04G001950	Cucurbita pepo (Zucchini)	cpelsiB148
Lsi04G001950	Cucumber (Chinese Long) v2	culsiB365
Lsi04G001950	Melon (DHL92) v3.5.1	lsimeB278
Lsi04G001950	Watermelon (Charleston Gray)	lsiwcgB271
Lsi04G001950	Watermelon (Charleston Gray)	lsiwcgB293
Lsi04G001950	Watermelon (97103) v1	lsiwmB326
Lsi04G001950	Silver-seed gourd	carlsiB960
Lsi04G001950	Cucumber (Chinese Long) v3	cuclsiB393