Lsi04G001470 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G001470
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Pectinesterase
Location	chr04 : 1677737 .. 1687521 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTGAGAGTCTAAAAATGAGGAGTAGAGAGTGAATAAATAAACAATCAACTGTTTATGGTATTGTGTGCCATTTGTTTTTTAATAGGTGAAGTGACAAACTTTCAACCAATACAATAACTTTGAAGTAGTGATCCATTATGAACAATATGCTTTTAAAAAAAAAGAATCGTCATTAATAATCATACATAATCTCACCAATGAACTCGAAGTCCAATCGTCAGTGAGTCCAACTTAAATTCAATCTAAGTTTGACCCAAAGTTAACATTTGATCTACTCAACCCATTTATTTATTGAATTGAGCTTGGGTCAAGCTTGAGCCTTCACTTTTTAAAATCGGGCTGGACCAACCCAACCTAGTGATGAAGGTAATATATGACTAAACTATTATATGAAATGAGAGAAAGCTTCTAATCTCCTTATGAACTATTAAATATTTAATTTTTTAACTTTTTAAAAAAATTATTCATTATACTTATTTTTCAAAACTACATAAGAATATAAGATTGATTTTGTATATATAATCTTATTTAGTTTGAAATTTTTATGGATAAATATATATGTTTTAATTGGCCCGGATTGTTTTCCAATTTAATCGGCATAATTTTAACATTTTCAATTTAGTCCTCTTATCATCTAGAAGCCACAATTTCAGGGCAAACTATTGAACATCTAGAAGCCACAATTTCAGGGCAAACTATTGAAGCAACGAATCTAAAATAGGAGGCCAATTAACCCAAAAGAAACTAGGACTGACCAAATAAATAGTAAAATTTAAAGTTTCTTTTGAAAAAATAGCAAAAACTTTTTTAAATTGTAAAAATAACAAAACTATTATTTTAAATAAAAAAATACAAATGAGCAAATACCTAAACTACCCATACATACTCAAATTGATAAAACTCAAATCATAAACTACAACAAATCCAAAAACAATTGAAAAGTATTCTAAAAGCCCCACCAAACCCCAAATCAAATGAGTAATTTAATCAAAGCCAACCCACATAACACAAAAACCAAAGATCTGAGAAGAGCGAGACAAAATGATAAGGAGATGATAAATGAGCTAGAAAGAGAAAGAGAGGAAGATCAATGGCTTGCGGTAGCATTTGTGCCAAGGGAAACAGTTTTCCTTGCCTTTTCATTTAAATAAAAGATTTAAAGGGAAAATAATTACAAAACATATATAGAATTATATTTGCAAATTATGGAAATATATTTTCTAATATTATAATTTTTTTAAAAATTACCATGCTTATTTTTTAGATTTTAAGAAAATAAATCTTAAAACCTATGGGAAAACTTAATTTTCCATTACTGAAAAAAATGGTTCCAAAGAAGGAAAATTTGTTTTCCATAAGTTTTAAGTTTTTCTTTTAAATTACCATTCTTATTTTTTAAATTAACAAAAAAAAAATTTACGAGAAAATGTTTCAAATCTTACCAAAAGTCTATCTAGGTGAGACGTAAAATTGAAGGCATTTGAATAAGAGACAAAATGATATTTTCTTTATGTGGGGTTCTCCCTTCAAAATCTGAAAAAGTAATAACAGAGGTTAGAAAAAAAGTTTTTTAAAAAAAGTTAGTTTGTTTCCTAAAAATCTTTTTAGGTTAAAATTATCAATCTCTCCACTATGAAATATATGTTTTATGGGTATTTAAATATCATTCTGCAAATTAAGAAAATAAAACATCTTGATTTTAGACATAGGGATTTGAAGAGCGAGATTTTTGTTTTTCTCCAATTTTTCTCTTTTTCAAGACATATATGTCTTGACAATAACATGTTACAACACAACAACATCAATATATTTTCATATGGTGATATATTCATTTCATACCGTATATATTTATATTTCATACGTGCAAGTGTGTTTTTAATAATATGTTGTATGTATTTTGTATACAAATTTTTATGAAAAAGATATATATAACTAAAATATATTTGTAAAGAAGTTGATGGTGATGACGAACAACTTACAATGTATATATCTACAAATAACTAAAGATACAGAGTGCATATGACAAAATAGGTCAAATACATATTTTAATAATAAGATGTATATGTTATGTAGTAATTGCAAAGTAGAATAAATACTATTAGAATTGATTATATAAATTATTGATTTTTCAGGGGTATATATTATCTTATAGTTACAAACTACACTAAACACTATCATATTTATATAACACAAGATGTTTTGAATCAAGAAAAATGGAAAGAAAAAAAAAACCAAAACAACAAGATTCAAACAAAGGTTTAAAATGTCATTGTCTCAATTTTACATAAATGTCGATAGAAATAACGATAAAATGCCAATGTCCATAAGTACTTCTAGAAAAATTATAAAAACAAAATATTCCAATAACTGATTTAATATATATATATATATATATATATATATATATATATATTTATTTACTTTTTAAACAAGTTAAAATATTTATTATTTATATTATATTCATATTAGTGACATTTACTTTCTTTAATGAATTTTTTTATCATATAGTAAAAATGTAGATTCACCCTTAATTACTAAGGTGAAAATGTACATGGAAATAAATATCTAACTTTTATAGCAACATATCAGTGGAAGATAATCTAAATTCTAATTTGATTTTTCAAAAAAATAAAAAAGATAATGGAAATATATCTTCTTTGAATGAAAATATCCCTATTAAAGTAATTACCATATATATAATAGTTGTTTTCATATATAAATATCCTTAATTAAGGTAATTACCATATATGTTATAGTTGTTTTCGCATATAAATATCTGTATTATGGTAATTACCATATATATTATAGTTGTTTTCGCATATAAATATCTCTATTATGGTCATTACCTTATATATAATAGTTGTTTTCTGTCTACAAAGATCTCTATTATTTAACCTTTTAAGACACTCGAAAAGAGAGAAAGAAAGACCATTCGAAAAAGATGGGTGTGGAAAAACTCTTTGGTATCGGTCTTTTACTTCTTCTTAGCACTACTTTCTGTTCTATTGCTCAAAAGGATGAAAGTGGTGTCTCAAATAATTTTGTCAACAACACATGCAACCAATTTGAAAAAAGGTTCATCAAAACGTGCTTTGCTGTGATAGATTCAGATCCTCGCGAAGACTTGAAATTAAACGCTTCAGGACTTTTAGTCATCTTTATAAATCATACGATTCCAAATATCACTGAAAGTCATTCCTACCTTGTGGAGCAACTCAAGAGATCAGACTTAGACAAGCGCGTAAGAGGTATCTTTGAACTTTGTTTAGAAGATTATGAGAGTAGCATTGCTACTCTCGAATCATCATTAGAAGCATTGTTAAAGGAACACAAAAAAGAGTTGAGTCTGAGCATGACTGATGCATTTGACAATGTAGCGGAATGTGATTTGGAATTTGATCTTGATAATGTGCCACCACCGCCATCTTGGTCGTCTCGTTATCAAAACGTGTGAAACCTTTTTGAACTTGTAATGGGGGCTGCAAATCTCTTACAGTGCAATCAACTTCCAGCTTGTTTAATTCATTGATAGGCCAGTTATATCACAAAGAGTGTAACGTGTGATGTTTCATGCAACAATAATAAAACTATGAAATGTATTTCAATTTATATAATATTTCATGATGTTTAATCTTATTGTTGGAGTATTGGAGATTGTTTTGAAATATCGTGAATCTATGCGATCTTAAATGAATCAAACACGAAGTCTCCTAAACCTTAAGTTATATGAAATTATTATTCAGTTTTCTTTTTTAACATTTTTATTATTATTGGTGAGTTAATTCGTCTAATATGCTCTCAAGATGATAAAATATAATTGATATATCCAAGAAAAGGTTGGTATCAAATACAATTAAAGGTTGTCTTATTTTGTATTATGCTACAAGTATTGGATCTCCTTTTTTGATATGATCTTCTATGCAAACCCTACACTACGCGTACATATGTAACACTTTATTGCATATTCTACACTGTGTAGTCTTCTTCATGGAATTTGGAATTGAAAGAATAATCACTAAAATTCTCGTAGTATTATTCGTTGAGAATTCCACATCCAAAAAAAAAGCAATACACCTCATAATCTTAATAGATTTGAGTTAAAAATTGTTTTTGTCTTGTTGTTTTATTTAGTCTAATAATGAAAAAAATAAAATAGCCTTTTTTTTAGCAATCGAATTACTAATTGAAATAGAATGAAAATTTTGAAATATTTTATATATTAAATAATATTATTGGTTACCATGTTAGATTTATGTATACTATGGAATAAAGTGAATGGTTGTTTTCAATTATAGAAAAAAATGAGTTAAACTATTTACAAATATAGAAAAGTTTCATTGTCTATCAGCGATAGACCGCGATAAACTTCTATCACTTGAGTGATAGACCGCAATAGACTTTTATCGCTTAAGCGATAGAAGTCTATCGCAGTCTATTGCAGTCTATTGTTGATAGATAGTGAAATTTTTATATATTTGTAAATAGTTTGATATTTTTTCTATTTATAATAATTTTCCTAAAATAAAATGAATAAGAGAAAAAAAATTGGTATAAAATAATAAGAGATTATTTTTAAAATGAATATTAATAAAAAAGATGGGTCTTTTCACAAATAGAAAAAAAAACTAAACTAATTATACATACAAAAAAAAAGTGGAAAATAGAAAAGCATGGAGTACGCTTTTTTCTATATATGTAATTAGTTTTGTTTTTTTTCTATGCACGACAATTTCCCTAAAAAAAATATCATCTAGAAACAAATAATAACATTAACCACAATTTCGGTCAAAATATTGAAGCCACCAGGCCTAAAATACAAGGCCCATTTAGCAAAAAAAAAAAAAAAATTACACATATAACCTAATTATATAGGTCTAATTACAAAATTATCTTAAAATCCCTATTTTTTTCATGAATAGTCTAATAGGATTAAATATTATATAAAAATCTAGCTCAAATGTCTATATATTGCCCTCCACAAATTTCAAATATTTTGACAAGTAATAATAAAAAAAATTACAAAAAAGAGAAGACACATATGGGAAAAAAAATACCTTATTCACGCAACTTAAATGATTTTTTTCCATATTCATATGGAAAAAATAGAATTTCAAATATTTTAAAAAATAATAAGAAGAAAAAAATAGAAATAAGAAAAGACAAATATGGAAAAAAAATATCATATCCACATGCCTATCAATCATTAATAATTCACGCGCATAAAAATTACGTAGATTATAGTACATAGTATATATACAGTTTATTTGTACATTTTGTTTTCAATTTCAAATATATATGGTTATATTTCAAATAATCGGAGGACAACATCTATCTTAGTATAATATACGTGTGTATATATGACAAACTATGTGTAATATATATCTTAATAAAAACGAGACTAACATTAAAATATGAGGTATATATTATATAAAATCTTAAATTTGTATTTGTTCTAACTAAACACATTTGTAATAAACCTCATATATATTTGAAATAACATTGTATATATTTGAAATAAATATTGTATATATACATAAATATCATATAAGTGAAAGAATAAAATGATATTCATTAAATAATAATCCAAAACGCAAAAATATCTTAGTATAATATACGTGTGTATATATGAAAAACTATGTGTAATATATATCTTAATAGAAATGAGACTAACATTAAAATATAAGGTATATATTATATAAAATTTTAAATTTATATTTGTTCTAACTAAATACATTTGTAATAAACCTCATACATAGTTGTTGAGCTTTATAGAAAAAATTGATTTTGACCTTAAAGTTGTCCAACTATAATAAATTTGGATCCAAAACTTTTAATTTCATCAATTTCAATAACTTAAATAATTGTTGCAATTTTAACCTTAATATTTGAAAAAATTTTGCAATTTTAAACTTCTAATAAGTTTTTGCTCCCGTTATTGTTAAAAAAAACTCCCCTTATGCAATATGAAATTGATTTTCTTAGAGAAATTGATTTTTTTAAAGAAATTGTGAATGTCATTTAATGATTATTTTATGTGTTGGTGCAGCTTATTCTTGTGCAAATTTTCATTTTTTAAAATTAATGAGATAATGAAGAATTTTATTTTATTTTGTTAAATTTAGTAGATGAATTAATTGAAATTGAACCTACATAAGTTTAGAATTAAACGTTATGAAATTGAAAGTTTGGGGTTCTAATTTGATTCAACCTAGTTATATTTTATGTTTTTCATTATTCATTTTTAAAAAATTACATTTGAAAGTTGAAACCAAAAAGACTATGGGCAGTAATAATTAATTATGATCAAGAGTGTTATTATCAAATCAGTAACATTTGTTTTGGGATAAATTCTGTAGTGAACGACAGTTTTTTTTAATGAAAAATTGATATGAATATTTATTATTAAATTATTATTATGTATAAAAAGTTAAGCTTGGAATTAGTAGTGCACTTCTTAAACCATACCAACTCATAATTAAATTAAGAAATACCACTTTACATTTATCCTAAAAGAACTAACTTTCAGGATATAATTTCATTAACAATTTAAGAATTTAATATTTTTTAAATCTTATAAAAATAGCGAATGATTCAAAAAATCTAAAATTCAAAACACCAAATCAAAGATTCTATTAGCTATTAAAAATTCAAATGTTTTAAATCTTAAACTTGAAATTACCTAACCACAAAAAAAATCTTACTAACACCCAAAAGAAAAAAAAAACATACTGTCTTACAAATACATTATAGTTGAAGGAATCAGACAACCAACCAATTTTAATATGATTAGCCAAAACAAAAATATATGGTATTCAAATTAACTATTATACCCCTATTACTAAAGCCCGATGATCCTCTATACAACTATACTAGAAAATAAATACTACTAAAGTCTGACAAATATAACTATGCTAAAAAATAAATATACTACAATGAATTTTAACAATTTTAACACGATCAAATACACATATACAGATAGTATTTGCTCCAAAGTAGAAGACATGTGGAGAGCATTGGCAACGACATTGAGCAGTAAAGTTAATCTGAATAATTACTTCCTGTTTCTCTCCCTGCACAAAATGGTGATCTTTCGAAAGAGACTTTCTGTATTGATTTAGATCTATTATTTCTGTTTCAAACTTTCCCAAATTTCATAATTCAAACAAAGAAAAACTACTTTGGAGTTTCTTTTAAAATTGTATATTTTCCTTTTTGGCCATTCAGATTTCAACCGCCACTCGGATTTCAAGAATAATCTTTGTGGTTGGTTGGTATGATTATTACTTGTGGGTGTTTGGTAGATGAAGGTCATGCCCTTACCCTTCTCCTTTGAAGAGCTTTGTCAACCCTACACGATGAAGAATCTCCTCCTCCCCTCGATCTCCATCAATCCCGTCCTCCCCTCTAAACTTCCCCTTATGCGAATTGAAAAAATTTTGCAATTTTAAACTTCTAATAAATTCTTGCTCTAGTTATTGTTAAAAAAAATTCCCCTTATGCGATATGAAATTGATTTTTTTTAAAGAAATTGTGAATGCCATTTAATGATTAATTTATTTGTTGGTGAAGCTTATTCTTGTACAAATTTTTATTTTTTAAAATTAATGAGATAATGAAGAATTTTATTTTATTTTTTTAAATTTAGTGGATGAATTAATTGAAATTGAACCTACATAAGTTTAGAGTTAAACTTTATGAAATTGAAAGTTTGAAGTTCTAATTTGATTCAACGTGATCAGTTATATTTGATGTTTTTCCATTAAATTTTTTAAAAAAGATTACATTCGAAAGTTGAAACCAAAAAGACTACGAGCAGTAATAATTAATTATGATCAAGAGTGTTATTATCAAATCAGTACCATTTTTTTTTTGGATAAATTCTGTAGTGCACGTCTTAAATCATACCAACTCATAATTAAATTAAGAAATACCACTTTACATTTGTCCTAAAAGAACTAACTTTCAGGTTTTTTTTTTTTTTTTTTTTTTTTCCTATTTTACAGTATTTTATGATTTTGCATTTGATTCTATGCTAAATATGTATTCTACTTATACTGAGAATGCCTCTTATCATAACTCCAAAATGAAAGTATTCAACAACTATCATCTGATTTTATTTTGCATTTAGATAAACTTAAACAAATACAATATTTGAAACCAAGCAGTACAGAATAATTATGACAAGGACTTATCATCGTAACTTTTTGGACAGTTTTCTTAAACTGTAAATATGTAGATCTCAGTGTTTTTCTTCGTTCATAGCTTTCAATTTCTTGAATTTCTCTTGAATTTCTTGAATCTCTCTTGTTTTAGTTGCATATTTTTCTTTTCTCCCAACCATGCATTCACTTCAGCTACTTGCATATTTCATTTTAATTTCTTTCATTTTCCCTGTTAGCAGCATTATATTGTTTAATGCTACCGTATCTTTGAATGGTCATGGAGAGTTTAGAACTATTAGGAATGTCATATCTGTGGCACCAAATAATAGTAATTTTAGGTTTTACATCCATGTAAAGCCTGGAATATATAACGAACATGTCGAAATTCCAAGCGAAAAAACTTTCATAGTACTGATAGGAGACGATGCAACAACTACCATTATTGTTGATAATAGGAGCAATCTTAGTGGATTTGGAACCACTAATTCAGCCACTTTCAGTAAGCACTCTCTTTTTCTTTTTTGTTCTTATTCTTTAATTTCAATTCTTATTTATGTCTACTATGCATTGCAATTTAGTAGGTGACAAAAAAATTATTTTAGAATATATGGAGCTCATTATTGTTTAAATTAATAATTATTGTACGTTACTTTTTTTTTTCCCTCTTTTTTTCAATTGTGAAAGACAACAATATTTATTTTTTTCTCTTTTTTTAAGTTGTGAAAGACAACAATATTTATTTTTTCTTTATTTTTTTCTCTTTTTTTAAGTTGTGAAAGACAACAATATTTATTTTTTCTCCTTTGTTCATTGTGAAAGGCAACAGTATTTATTTTTTCTCTTTTTCAGTCGTGAAAGGCAACAATATTTATTTTTTCTCTTTTTTTCAGTTGTGAGATGCAACAATATTTATTTTTTCTCTTTTGTTCAGCTGTGAAAGGCAACAATTTCATAGATCACATTTGAAAATTCGGCGGGAGCTAAAAATGGGCAGGCGGTTGCGTTTCTTAATAGTGCAAACCACACTGTGTATTACAAATCAAGATTCTTGGATTCCAAGATACATGGTTCATAGAAAATTATTGGATATTCTTTAAAAATTGTGAAATTTATGGTACCGTTGATTTCATATTCGGAGGTGGACTTGCAATGTTCCAAGATTGCAATATATATGCAAGATTGCTAAACATAACTATTAGAATTACCGCACAGTCTAAACAATCACCGGAACAACTGAGTGGGTTTTGCTTTCAGGACTGCAGTGTGAGAGCATCTCCAGAGCTTGGGCCACCAACAAACGAAACTCGTAACTTTGAAGTTTATCTCGGCCGACCTTGGAGAGATTGTGCGAGGGTAATTTTCATGGAGTCATTTCTAGATTCTATAGTCAATTCAGCTGGTTGGTCTGCGTGGTCACCAGAGAGACCTCTTAATTTACTGTTTTATGCTGAGTTTAATAATAGAGGTCCTGGAGCGAATTTATCTGGAAGGGTAAAATGGCCTGGTTTCCATGTTATAGACAATCCAACCCAAGCTAGGGATTATACCGTAAGAAGATTCATTGATGGAAACGAATGGTTACCCGAAACTGGTATACCATTTAGACTAGATCTTTAG

mRNA sequence

ATGAATGATGAAAGTGGTGTCTCAAATAATTTTGTCAACAACACATGCAACCAATTTGAAAAAAGGTTCATCAAAACGTGCTTTGCTGTGATAGATTCAGATCCTCGCGAAGACTTGAAATTAAACGCTTCAGGACTTTTAGTCATCTTTATAAATCATACGATTCCAAATATCACTGAAAGTCATTCCTACCTTGTGGAGCAACTCAAGAGATCAGACTTAGACAAGCGCGTAAGAGGTATCTTTGAACTTTGTTTAGAAGATTATGAGAGTAGCATTGCTACTCTCGAATCATCATTAGAAGCATTGTTAAAGGAACACAAAAAAGAGTTGAGTCTGAGCATGACTGATGCATTTGACAATGTAGCGGAATGTGATTTGGAATTTGATCTTGATAATGTGCCACCACCGCCATCTTGGTCGTCTCGTTATCAAAACATTTCAACCGCCACTCGGATTTCAAGAATAATCTTTGTGGTTGTATTTTATGATTTTGCATTTGATTCTATGCTAAATATCTGTGAAAGGCAACAATTTCATAGATCACATTTGAAAATTCGGCGGGAGCTAAAAATGGGCAGGCGGTTGCGTTTCTTAATAGTGCAAACCACACTGTGTATTACAAATCAAGATTCTTGGATTCCAAGATACATGGACTGCAGTGTGAGAGCATCTCCAGAGCTTGGGCCACCAACAAACGAAACTCGTAACTTTGAAGTTTATCTCGGCCGACCTTGGAGAGATTGTGCGAGGGTAATTTTCATGGAGTCATTTCTAGATTCTATAGTCAATTCAGCTGGTTGGTCTGCGTGGTCACCAGAGAGACCTCTTAATTTACTGTTTTATGCTGAGTTTAATAATAGAGGTCCTGGAGCGAATTTATCTGGAAGGGTAAAATGGCCTGGTTTCCATGTTATAGACAATCCAACCCAAGCTAGGGATTATACCGTAAGAAGATTCATTGATGGAAACGAATGGTTACCCGAAACTGGTATACCATTTAGACTAGATCTTTAG

Coding sequence (CDS)

ATGAATGATGAAAGTGGTGTCTCAAATAATTTTGTCAACAACACATGCAACCAATTTGAAAAAAGGTTCATCAAAACGTGCTTTGCTGTGATAGATTCAGATCCTCGCGAAGACTTGAAATTAAACGCTTCAGGACTTTTAGTCATCTTTATAAATCATACGATTCCAAATATCACTGAAAGTCATTCCTACCTTGTGGAGCAACTCAAGAGATCAGACTTAGACAAGCGCGTAAGAGGTATCTTTGAACTTTGTTTAGAAGATTATGAGAGTAGCATTGCTACTCTCGAATCATCATTAGAAGCATTGTTAAAGGAACACAAAAAAGAGTTGAGTCTGAGCATGACTGATGCATTTGACAATGTAGCGGAATGTGATTTGGAATTTGATCTTGATAATGTGCCACCACCGCCATCTTGGTCGTCTCGTTATCAAAACATTTCAACCGCCACTCGGATTTCAAGAATAATCTTTGTGGTTGTATTTTATGATTTTGCATTTGATTCTATGCTAAATATCTGTGAAAGGCAACAATTTCATAGATCACATTTGAAAATTCGGCGGGAGCTAAAAATGGGCAGGCGGTTGCGTTTCTTAATAGTGCAAACCACACTGTGTATTACAAATCAAGATTCTTGGATTCCAAGATACATGGACTGCAGTGTGAGAGCATCTCCAGAGCTTGGGCCACCAACAAACGAAACTCGTAACTTTGAAGTTTATCTCGGCCGACCTTGGAGAGATTGTGCGAGGGTAATTTTCATGGAGTCATTTCTAGATTCTATAGTCAATTCAGCTGGTTGGTCTGCGTGGTCACCAGAGAGACCTCTTAATTTACTGTTTTATGCTGAGTTTAATAATAGAGGTCCTGGAGCGAATTTATCTGGAAGGGTAAAATGGCCTGGTTTCCATGTTATAGACAATCCAACCCAAGCTAGGGATTATACCGTAAGAAGATTCATTGATGGAAACGAATGGTTACCCGAAACTGGTATACCATTTAGACTAGATCTTTAG

Protein sequence

MNDESGVSNNFVNNTCNQFEKRFIKTCFAVIDSDPREDLKLNASGLLVIFINHTIPNITESHSYLVEQLKRSDLDKRVRGIFELCLEDYESSIATLESSLEALLKEHKKELSLSMTDAFDNVAECDLEFDLDNVPPPPSWSSRYQNISTATRISRIIFVVVFYDFAFDSMLNICERQQFHRSHLKIRRELKMGRRLRFLIVQTTLCITNQDSWIPRYMDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLNLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPFRLDL

Homology

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BLAST of Lsi04G001470 vs. Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.3e-30
Identity = 53/116 (45.69%), Postives = 79/116 (68.10%), Query Frame = 1


Query: 219 DCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLN 278
           +C V A+ +L P  +  + F   LGRPW+  +R +++++FLDS++N AGW  WS +  LN
Sbjct: 394 NCRVTAASDLKPVQSSVKTF---LGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALN 453

Query: 279 LLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPF 335
            L+YAE+ N GPG++ + RVKW G+HV+ +P+Q   +TV  FI GN WLP T +PF
Sbjct: 454 TLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPF 506

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BLAST of Lsi04G001470 vs. Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-29
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 1


Query: 218 MDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPL 277
           ++C + A+P+L P      NF+ YLGRPWR  +R + ++SF+D +++ AGW     +  L
Sbjct: 415 LNCRILAAPDLIPVK---ENFKAYLGRPWRKYSRTVIIKSFIDDLIHPAGWLEGKKDFAL 474

Query: 278 NLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPFRL 337
             L+Y E+ N GPGAN++ RV WPGF  I+N T+A  +TV  FIDG+ WL  TGIPF L
Sbjct: 475 ETLYYGEYMNEGPGANMAKRVTWPGFRRIENQTEATQFTVGPFIDGSTWLNSTGIPFSL 530

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BLAST of Lsi04G001470 vs. Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-28
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 1


Query: 220 CSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLNL 279
           C++ AS +L P     + F  YLGRPW++ +R + MES+L  ++N AGW+ W  +  L  
Sbjct: 429 CNIIASSDLEPVL---KEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKT 488

Query: 280 LFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPF 335
           L+Y EF N GPGA  S RVKWPG+HVI +P +A  +TV + I G  WL  TG+ +
Sbjct: 489 LYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAY 540

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BLAST of Lsi04G001470 vs. Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.1e-28
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 1


Query: 222 VRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLNLLF 281
           + A+P+L P      NF+ YLGRPW+  +R + M+SF+D +V+ AGW  W  +  L  L+
Sbjct: 405 ILAAPDLIPVQ---ANFKAYLGRPWQLYSRTVIMKSFIDDLVDPAGWLKWKDDFALETLY 464

Query: 282 YAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPFRLDL 339
           Y E+ N GPG+N++ RV+WPGF  I+   +A  ++V  FIDGN+WL  T IPF LDL
Sbjct: 465 YGEYMNEGPGSNMTNRVQWPGFKRIETVEEASQFSVGPFIDGNKWLNSTRIPFTLDL 518

[Close]

BLAST of Lsi04G001470 vs. Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.2e-28
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 1


Query: 220 CSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLNL 279
           C++ A  +L   +    +   YLGRPW+  +R + M+SFL +++   GW  W+ +  LN 
Sbjct: 404 CNITADSDLEAAS--VNSTPTYLGRPWKLYSRTVIMQSFLSNVIRPEGWLEWNGDFALNS 463

Query: 280 LFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPF 335
           LFY E+ N GPGA L  RVKWPG+ V +  TQA++YTV +FI+GN WLP TG+ +
Sbjct: 464 LFYGEYMNYGPGAGLGSRVKWPGYQVFNESTQAKNYTVAQFIEGNLWLPSTGVKY 516

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BLAST of Lsi04G001470 vs. TrEMBL
Match: W1NWN1_AMBTC (Pectinesterase OS=Amborella trichopoda GN=AMTR_s00105p00078750 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.5e-32
Identity = 62/118 (52.54%), Postives = 79/118 (66.95%), Query Frame = 1


Query: 217 YMDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERP 276
           +++C+VRAS       NE  +   YLGRPW+  +R +FM+S+L  I+ S GW AW     
Sbjct: 230 FINCTVRAS-------NEASSTPTYLGRPWKQYSRSVFMKSYLQGIIQSEGWLAWDGSFA 289

Query: 277 LNLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPF 335
           LN LFYAE+ N GPG+ L GRVKWPG+H+I N TQA ++TV  FIDG  WLP TGI F
Sbjct: 290 LNTLFYAEYKNYGPGSTLGGRVKWPGYHIIRNVTQANEFTVLNFIDGGSWLPSTGIEF 340

[Close]

BLAST of Lsi04G001470 vs. TrEMBL
Match: A0A072U3V6_MEDTR (Pectinesterase OS=Medicago truncatula GN=MTR_7g108905 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.5e-31
Identity = 61/130 (46.92%), Postives = 89/130 (68.46%), Query Frame = 1


Query: 209 NQDSWIPRYMDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGW 268
           NQ++ I   ++C + A+ +L P  +    F+ YLGRPW+  +R +++ SF+D++++ AGW
Sbjct: 431 NQNTGIS-ILNCKIAAAADLIPVQS---TFKSYLGRPWKKYSRTVYLNSFIDNLIDPAGW 490

Query: 269 SAWSPERPLNLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLP 328
             W+    L+ LFY E+ NRGPG+N S RV WPG+ VI N T+A  +TVR+FI GNEWL 
Sbjct: 491 LEWNGTFALDTLFYGEYKNRGPGSNTSARVTWPGYKVITNATEASQFTVRQFIQGNEWLN 550

Query: 329 ETGIPFRLDL 339
            TG+PF LDL
Sbjct: 551 STGVPFFLDL 556

[Close]

BLAST of Lsi04G001470 vs. TrEMBL
Match: I1LB84_SOYBN (Pectinesterase OS=Glycine max GN=GLYMA_10G150600 PE=4 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 4.2e-31
Identity = 58/130 (44.62%), Postives = 88/130 (67.69%), Query Frame = 1


Query: 209 NQDSWIPRYMDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGW 268
           NQ++ I    +C + A+ +LG  TN     + YLGRPW++ +R ++M+SF+D +++  GW
Sbjct: 403 NQNTGIS-IQNCCIIAASDLGDATNNYNGIKTYLGRPWKEYSRTVYMQSFIDGLIDPKGW 462

Query: 269 SAWSPERPLNLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLP 328
           + WS +  L+ L+YAEF N GPG+N S RV W G+H+ID    A D+TV +FI G +WLP
Sbjct: 463 NEWSGDFALSTLYYAEFANWGPGSNTSNRVTWEGYHLIDE-KDADDFTVHKFIQGEKWLP 522

Query: 329 ETGIPFRLDL 339
           +TG+PF+  L
Sbjct: 523 QTGVPFKAGL 530

[Close]

BLAST of Lsi04G001470 vs. TrEMBL
Match: A0A0B2Q7Z5_GLYSO (Pectinesterase OS=Glycine soja GN=glysoja_012070 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.2e-31
Identity = 58/130 (44.62%), Postives = 88/130 (67.69%), Query Frame = 1


Query: 209 NQDSWIPRYMDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGW 268
           NQ++ I    +C + A+ +LG  TN     + YLGRPW++ +R ++M+SF+D +++  GW
Sbjct: 399 NQNTGIS-IQNCCIIAASDLGDATNNYNGIKTYLGRPWKEYSRTVYMQSFIDGLIDPKGW 458

Query: 269 SAWSPERPLNLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLP 328
           + WS +  L+ L+YAEF N GPG+N S RV W G+H+ID    A D+TV +FI G +WLP
Sbjct: 459 NEWSGDFALSTLYYAEFANWGPGSNTSNRVTWEGYHLIDE-KDADDFTVHKFIQGEKWLP 518

Query: 329 ETGIPFRLDL 339
           +TG+PF+  L
Sbjct: 519 QTGVPFKAGL 526

[Close]

BLAST of Lsi04G001470 vs. TrEMBL
Match: V4TAU2_9ROSI (Pectinesterase OS=Citrus clementina GN=CICLE_v10003641mg PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.2e-31
Identity = 61/130 (46.92%), Postives = 92/130 (70.77%), Query Frame = 1


Query: 209 NQDSWIPRYMDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGW 268
           NQ++ I  + +C+++A+ +L    N T   + YLGRPW++ +R ++M+SF+DS+++ AGW
Sbjct: 445 NQNTGISIH-NCTIKAADDLANSINAT---QTYLGRPWKEYSRTVYMQSFMDSLIDPAGW 504

Query: 269 SAWSPERPLNLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLP 328
             WS +  LN  +YAEF+N GPG++ + RV WPG+HVI N T A  +TV  FI+G+ WLP
Sbjct: 505 KEWSGDFALNTTYYAEFSNTGPGSDTTNRVTWPGYHVI-NDTDAECFTVSSFIEGDAWLP 564

Query: 329 ETGIPFRLDL 339
           ETG+PF  DL
Sbjct: 565 ETGVPFDGDL 569

[Close]

BLAST of Lsi04G001470 vs. TAIR10
Match: AT4G02300.1 (AT4G02300.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-30
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 1


Query: 218 MDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPL 277
           ++C + A+P+L P      NF+ YLGRPWR  +R + ++SF+D +++ AGW     +  L
Sbjct: 415 LNCRILAAPDLIPVK---ENFKAYLGRPWRKYSRTVIIKSFIDDLIHPAGWLEGKKDFAL 474

Query: 278 NLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPFRL 337
             L+Y E+ N GPGAN++ RV WPGF  I+N T+A  +TV  FIDG+ WL  TGIPF L
Sbjct: 475 ETLYYGEYMNEGPGANMAKRVTWPGFRRIENQTEATQFTVGPFIDGSTWLNSTGIPFSL 530

[Close]

BLAST of Lsi04G001470 vs. TAIR10
Match: AT4G02320.1 (AT4G02320.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-29
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 1


Query: 222 VRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLNLLF 281
           + A+P+L P      NF+ YLGRPW+  +R + M+SF+D +V+ AGW  W  +  L  L+
Sbjct: 405 ILAAPDLIPVQ---ANFKAYLGRPWQLYSRTVIMKSFIDDLVDPAGWLKWKDDFALETLY 464

Query: 282 YAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPFRLDL 339
           Y E+ N GPG+N++ RV+WPGF  I+   +A  ++V  FIDGN+WL  T IPF LDL
Sbjct: 465 YGEYMNEGPGSNMTNRVQWPGFKRIETVEEASQFSVGPFIDGNKWLNSTRIPFTLDL 518

[Close]

BLAST of Lsi04G001470 vs. TAIR10
Match: AT4G33220.1 (AT4G33220.1 pectin methylesterase 44)

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-29
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = 1


Query: 221 SVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLNLL 280
           ++ A  +L P  N TR    YLGRPW+  +R +F+ + +  +V   GW  W+ +  L+ L
Sbjct: 409 NISADADLVPYLNTTRT---YLGRPWKLYSRTVFIRNNMSDVVRPEGWLEWNADFALDTL 468

Query: 281 FYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPF 335
           FY EF N GPG+ LS RVKWPG+HV +N  QA ++TV +FI GN WLP TG+ F
Sbjct: 469 FYGEFMNYGPGSGLSSRVKWPGYHVFNNSDQANNFTVSQFIKGNLWLPSTGVTF 519

[Close]

BLAST of Lsi04G001470 vs. TAIR10
Match: AT3G59010.1 (AT3G59010.1 pectin methylesterase 61)

HSP 1 Score: 125.2 bits (313), Expect = 7.8e-29
Identity = 58/172 (33.72%), Postives = 93/172 (54.07%), Query Frame = 1


Query: 168 DSMLNICERQQFHRSHLKIRRELKMGRRLRFLIVQTTLCITNQDSWIPRYMDCSVRASPE 227
           DS+  + +RQ +  + +    +   G     ++ Q+   ++ + S    Y+    R+ P 
Sbjct: 355 DSLYTLSKRQFYRETDITGTVDFIFGNSA--VVFQSCNLVSRKGSSDQNYVTAQGRSDPN 414

Query: 228 LGPPTNE-----TRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLNLLFY 287
                +      T + + YLGRPW+  +R + M+SF+D  ++ +GWS WS    L  L+Y
Sbjct: 415 QNTGISIHNCRITGSTKTYLGRPWKQYSRTVVMQSFIDGSIHPSGWSPWSSNFALKTLYY 474

Query: 288 AEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPF 335
            EF N GPG+++SGRV W G+H     T+A+ +TV  FIDGN WLP TG+ F
Sbjct: 475 GEFGNSGPGSSVSGRVSWAGYHPALTLTEAQGFTVSGFIDGNSWLPSTGVVF 524

[Close]

BLAST of Lsi04G001470 vs. TAIR10
Match: AT1G23200.1 (AT1G23200.1 Plant invertase/pectin methylesterase inhibitor superfamily)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-28
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 239 EVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLNLLFYAEFNNRGPGANLSGRV 298
           E YLGRPWR  +R +FM+  L ++V+ AGW  WS    L+ L+Y E+ N G GA++SGRV
Sbjct: 455 ETYLGRPWRSHSRTVFMKCNLGALVSPAGWLPWSGSFALSTLYYGEYGNTGAGASVSGRV 514

Query: 299 KWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIP 334
           KWPG+HVI   T+A  +TV  F+DGN W+  TG+P
Sbjct: 515 KWPGYHVIKTVTEAEKFTVENFLDGNYWITATGVP 549

[Close]

BLAST of Lsi04G001470 vs. NCBI nr
Match: gi|698509118|ref|XP_009799791.1| (PREDICTED: probable pectinesterase/pectinesterase inhibitor 20 [Nicotiana sylvestris])

HSP 1 Score: 149.8 bits (377), Expect = 8.4e-33
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1


Query: 219 DCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLN 278
           +C+++A+P+L      T   + YLGRPW++ +R ++M+SF+DS++N AGW+AWS +  L+
Sbjct: 423 NCTIKAAPDLALSNGTT---QTYLGRPWKEYSRTVYMQSFMDSLINPAGWAAWSGDFALS 482

Query: 279 LLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPFRLDL 338
            L+YAE+NN GPG+N S RV WPG+HVI N T A  YTV  FI GN WLP TG+P+  DL
Sbjct: 483 TLYYAEYNNTGPGSNTSSRVTWPGYHVI-NSTDAISYTVSNFIAGNFWLPATGVPYTGDL 538

[Close]

BLAST of Lsi04G001470 vs. NCBI nr
Match: gi|697142742|ref|XP_009625476.1| (PREDICTED: pectinesterase-like [Nicotiana tomentosiformis])

HSP 1 Score: 149.1 bits (375), Expect = 1.4e-32
Identity = 61/120 (50.83%), Postives = 87/120 (72.50%), Query Frame = 1


Query: 219 DCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERPLN 278
           +C+++A+P+L      T   + YLGRPW++ +R ++M+SF+DS++N AGW+AWS +  L+
Sbjct: 450 NCTIKAAPDLASSNGTT---QTYLGRPWKEYSRTVYMQSFMDSLINPAGWAAWSGDFALS 509

Query: 279 LLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPFRLDL 338
            L+YAE+NN GPG+N S RV WPG+HVI N T A  +TV  FI GN WLP TG+P+  DL
Sbjct: 510 TLYYAEYNNTGPGSNTSSRVTWPGYHVI-NSTDAISFTVSNFIAGNFWLPATGVPYTGDL 565

[Close]

BLAST of Lsi04G001470 vs. NCBI nr
Match: gi|769819222|ref|XP_006837199.2| (PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B [Amborella trichopoda])

HSP 1 Score: 146.4 bits (368), Expect = 9.3e-32
Identity = 62/118 (52.54%), Postives = 79/118 (66.95%), Query Frame = 1


Query: 217 YMDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERP 276
           +++C+VRAS       NE  +   YLGRPW+  +R +FM+S+L  I+ S GW AW     
Sbjct: 326 FINCTVRAS-------NEASSTPTYLGRPWKQYSRSVFMKSYLQGIIQSEGWLAWDGSFA 385

Query: 277 LNLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPF 335
           LN LFYAE+ N GPG+ L GRVKWPG+H+I N TQA ++TV  FIDG  WLP TGI F
Sbjct: 386 LNTLFYAEYKNYGPGSTLGGRVKWPGYHIIRNVTQANEFTVLNFIDGGSWLPSTGIEF 436

[Close]

BLAST of Lsi04G001470 vs. NCBI nr
Match: gi|548839796|gb|ERN00053.1| (hypothetical protein AMTR_s00105p00078750 [Amborella trichopoda])

HSP 1 Score: 146.4 bits (368), Expect = 9.3e-32
Identity = 62/118 (52.54%), Postives = 79/118 (66.95%), Query Frame = 1


Query: 217 YMDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGWSAWSPERP 276
           +++C+VRAS       NE  +   YLGRPW+  +R +FM+S+L  I+ S GW AW     
Sbjct: 230 FINCTVRAS-------NEASSTPTYLGRPWKQYSRSVFMKSYLQGIIQSEGWLAWDGSFA 289

Query: 277 LNLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLPETGIPF 335
           LN LFYAE+ N GPG+ L GRVKWPG+H+I N TQA ++TV  FIDG  WLP TGI F
Sbjct: 290 LNTLFYAEYKNYGPGSTLGGRVKWPGYHIIRNVTQANEFTVLNFIDGGSWLPSTGIEF 340

[Close]

BLAST of Lsi04G001470 vs. NCBI nr
Match: gi|922346929|ref|XP_013450376.1| (pectinesterase/pectinesterase inhibitor [Medicago truncatula])

HSP 1 Score: 144.4 bits (363), Expect = 3.5e-31
Identity = 61/130 (46.92%), Postives = 89/130 (68.46%), Query Frame = 1


Query: 209 NQDSWIPRYMDCSVRASPELGPPTNETRNFEVYLGRPWRDCARVIFMESFLDSIVNSAGW 268
           NQ++ I   ++C + A+ +L P  +    F+ YLGRPW+  +R +++ SF+D++++ AGW
Sbjct: 431 NQNTGIS-ILNCKIAAAADLIPVQS---TFKSYLGRPWKKYSRTVYLNSFIDNLIDPAGW 490

Query: 269 SAWSPERPLNLLFYAEFNNRGPGANLSGRVKWPGFHVIDNPTQARDYTVRRFIDGNEWLP 328
             W+    L+ LFY E+ NRGPG+N S RV WPG+ VI N T+A  +TVR+FI GNEWL 
Sbjct: 491 LEWNGTFALDTLFYGEYKNRGPGSNTSARVTWPGYKVITNATEASQFTVRQFIQGNEWLN 550

Query: 329 ETGIPFRLDL 339
            TG+PF LDL
Sbjct: 551 STGVPFFLDL 556

The following BLAST results are available for this feature:

BLAST of Lsi04G001470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PME2_CITSI	2.3e-30	45.69	Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1	[more]
PME39_ARATH	1.9e-29	46.22	Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=P...	[more]
PME1_SOLLC	1.3e-28	45.22	Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5	[more]
PME40_ARATH	2.1e-28	46.15	Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=P...	[more]
PME_PRUPE	6.2e-28	44.35	Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1	[more]

BLAST of Lsi04G001470 vs. TrEMBL


Match Name	E-value	Identity	Description
W1NWN1_AMBTC	6.5e-32	52.54	Pectinesterase OS=Amborella trichopoda GN=AMTR_s00105p00078750 PE=4 SV=1	[more]
A0A072U3V6_MEDTR	2.5e-31	46.92	Pectinesterase OS=Medicago truncatula GN=MTR_7g108905 PE=4 SV=1	[more]
I1LB84_SOYBN	4.2e-31	44.62	Pectinesterase OS=Glycine max GN=GLYMA_10G150600 PE=4 SV=2	[more]
A0A0B2Q7Z5_GLYSO	4.2e-31	44.62	Pectinesterase OS=Glycine soja GN=glysoja_012070 PE=4 SV=1	[more]
V4TAU2_9ROSI	4.2e-31	46.92	Pectinesterase OS=Citrus clementina GN=CICLE_v10003641mg PE=4 SV=1	[more]

BLAST of Lsi04G001470 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02300.1	1.1e-30	46.22	Plant invertase/pectin methylesterase inhibitor superfamily	[more]
AT4G02320.1	1.2e-29	46.15	Plant invertase/pectin methylesterase inhibitor superfamily	[more]
AT4G33220.1	3.5e-29	46.49	pectin methylesterase 44	[more]
AT3G59010.1	7.8e-29	33.72	pectin methylesterase 61	[more]
AT1G23200.1	1.7e-28	51.58	Plant invertase/pectin methylesterase inhibitor superfamily	[more]

BLAST of Lsi04G001470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|698509118\|ref\|XP_009799791.1\|	8.4e-33	51.67	PREDICTED: probable pectinesterase/pectinesterase inhibitor 20 [Nicotiana sylves...	[more]
gi\|697142742\|ref\|XP_009625476.1\|	1.4e-32	50.83	PREDICTED: pectinesterase-like [Nicotiana tomentosiformis]	[more]
gi\|769819222\|ref\|XP_006837199.2\|	9.3e-32	52.54	PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B [Amborella trichopoda]	[more]
gi\|548839796\|gb\|ERN00053.1\|	9.3e-32	52.54	hypothetical protein AMTR_s00105p00078750 [Amborella trichopoda]	[more]
gi\|922346929\|ref\|XP_013450376.1\|	3.5e-31	46.92	pectinesterase/pectinesterase inhibitor [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004857	enzyme inhibitor activity
GO:0030599	pectinesterase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0042545	cell wall modification

Vocabulary: **Cellular Component**
Term	Definition
GO:0005618	cell wall

Vocabulary: **INTERPRO**
Term	Definition
IPR012334	Pectin_lyas_fold
IPR011050	Pectin_lyase_fold/virulence
IPR006501	Pectinesterase_inhib_dom
IPR000070	Pectinesterase_cat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
cellular_component	GO:0005618	cell wall
molecular_function	GO:0030599	pectinesterase activity
molecular_function	GO:0046910	pectinesterase inhibitor activity
molecular_function	GO:0004857	enzyme inhibitor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G001470.1	Lsi04G001470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000070	Pectinesterase, catalytic	PFAM	PF01095	Pectinesterase	coord: 219..324 score: 5.6
IPR006501	Pectinesterase inhibitor domain	GENE3D	G3DSA:1.20.140.40		coord: 8..154 score: 8.8
IPR006501	Pectinesterase inhibitor domain	PFAM	PF04043	PMEI	coord: 10..134 score: 9.6
IPR006501	Pectinesterase inhibitor domain	SMART	SM00856	PMEI_2	coord: 7..157 score: 1.
IPR006501	Pectinesterase inhibitor domain	TIGRFAMs	TIGR01614	TIGR01614	coord: 7..158 score: 1.3
IPR006501	Pectinesterase inhibitor domain	unknown	SSF101148	Plant invertase/pectin methylesterase inhibitor	coord: 9..156 score: 1.28
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 220..336 score: 4.39
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 218..335 score: 3.5
None	No IPR available	unknown	Coil	Coil	coord: 86..106 scor
None	No IPR available	PANTHER	PTHR31707	FAMILY NOT NAMED	coord: 220..338 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G001470	Bottle gourd (USVL1VR-Ls)	lsilsiB152
Lsi04G001470	Cucumber (Gy14) v1	cgylsiB465
Lsi04G001470	Cucurbita maxima (Rimu)	cmalsiB379
Lsi04G001470	Cucurbita maxima (Rimu)	cmalsiB669
Lsi04G001470	Cucurbita maxima (Rimu)	cmalsiB684
Lsi04G001470	Cucurbita moschata (Rifu)	cmolsiB364
Lsi04G001470	Cucurbita moschata (Rifu)	cmolsiB660
Lsi04G001470	Cucurbita moschata (Rifu)	cmolsiB676
Lsi04G001470	Cucurbita pepo (Zucchini)	cpelsiB032
Lsi04G001470	Cucurbita pepo (Zucchini)	cpelsiB365
Lsi04G001470	Cucurbita pepo (Zucchini)	cpelsiB352
Lsi04G001470	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G001470	Cucumber (Chinese Long) v2	culsiB368
Lsi04G001470	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G001470	Watermelon (Charleston Gray)	lsiwcgB283
Lsi04G001470	Watermelon (Charleston Gray)	lsiwcgB300
Lsi04G001470	Watermelon (97103) v1	lsiwmB289
Lsi04G001470	Watermelon (97103) v1	lsiwmB312
Lsi04G001470	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G001470	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G001470	Silver-seed gourd	carlsiB767
Lsi04G001470	Silver-seed gourd	carlsiB960
Lsi04G001470	Cucumber (Chinese Long) v3	cuclsiB393
Lsi04G001470	Watermelon (97103) v2	lsiwmbB284
Lsi04G001470	Wax gourd	lsiwgoB387