Lsi04G000490 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi04G000490
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionEssential protein Yae1, N-terminal
Locationchr04 : 633856 .. 644166 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCTGTATAAAAAGATTGATAATGCATGCCCCTTTGGTCCTAAGATAATCTGGACATGAATTGTTGAGGTTTAGACGTTAATAGAAATGATATCATATGGTTGGTTATTTTGATTTAACAGTTGATAGTGTCTTTAGGTGGTTGGAGAACGAGAACCCATGTTGAGTTCTCTCCCTTAGAAATTGAAACATGTGAATTAAACTGGAATTTTGCATATTGAGTACCCACCTTAGAGTCGGAAACTAAATAATCGGAATGATGCCCAGTGATCTAAGTGTTCTGGTTAGGTTGTAAATTGGTCAATTTCACTGCTGTTGATCCGTTCTTCACCCCGAATCTGAGTCTGAATTTTATAAATCAATTGAGAAGTTGTGTTGTTTGTGATTGATTGATGATGGAAATGAGTTGTGATCAGCTCGGGTTTTGCAACACGGATTTACCGAGAAAAGTGAATCCGTCGATGTTCATAATTTTGTTTTGGGTAACCCACCTCTCTTCCTCTCCCTCTCTTCGTACACTTGATTTTCTTGCGTTAAAGTGTTGTATCTTGTTAAAAAAAATGATTTTTGTTTGCGTTTCAGTCCCGTGTGTCTAAGCTTTCTTTGAGCAAAATTGGGGCTATAGTTTGTTGTTTTAGTTCTAGTTTTATGAAATGATAATGATATGGGAAATTGTTGATGGGCGAAAGTGACCTCCTGACAGAAAGGTTGAAATAGACTCTCGTATATATATCCTCTTTTGAAATTTTTTTATGGAATTGAGTGGATAGTATTTGCAAATCATTTAGTTCTCATCTTATATACCACTGCTGTAGGAAATGCTTATCTGTTTTTGTGGAATTGAGCTTATAGGCCCAACCAATGCTTCTGATAATTGGTTTTGTTGAGAACATCCCTTTTTATGTTTATGTTGAGATAATCTAAGTCATTGTGCTTTGAAATTGACTTCACTATAACTATAAGGTTTTCTTTTATTCATTGCTGAAGAATAAAATCGGCCTAATTTTGTTAGATGGAGGGTACCATTGCTGAAGAACTTTATTCCGAGAGTTTACAGTCAACAAAATCAAAATTGGGTGATTTGTCATTATCTGATTGCAGACAAAATCGGCTGTCAGGTAGTTATTATCTTTTCAATGATGCATTTGAACATATTTTTAAATTTTTAATATGCTCGAAGCTTTGGACATGAATGTTATATTCCAAACGTACTATCTACAGAGGAATTAACGATCAACATATTAGCCAATTGTCTGAGAAGTTTAATTATGGGGGAATGCCTGAATATGTACTAGTCTTTAGAGTTTAGATAACCACACCTTATCTAAAGTTCTATGAACTTTTCCCTATTTTCGCTGCGCATATTAGTTGGTATATGCAGCTCTAGAATTCATCTTGAAGAAATATCTCGGTTTATGCTAAAGCAATTATTTCTATATTGCATTTTACTGAAATATTCTCTTCTATGGTGTATGGTTGGCACAAAAAAAAGCTTAATTATGCATCTAACATTACATTGCTATGTAATCTATTCTCTATCTACGATGCACATTATATGTGATTTTTATTTCTATATATACACACACATAAAGAACTGAGCTTTCATTGAGAAAAAAGTGAAAGAATACGCGGTCATTAAAGAAACAAAAAAAAATCCACAATAGGGAACCCCACGAGAGGGAGGGATTCCAATCAAGTAAAATAATACTCAAAGAATAATTATAAACTAACTGTGTTACCGATGCCCACAAGAGAAACATGGAACCTTGCAAGGGACCACACATCACAAATTACACCTAAAAGCGTTGCTATGACTTGGACCAAAGTTTGTAGGATAATATGAGTCAAGGTCTGGTTGCAGGTTCTGGTGTGGATGACTCGTGCGAAGATGATGGATCTTTATGGGGTGGTTCTGATGAAGGCTTGGAGGAAACAACTGATTTGGACAGGGAGTGGCAGAGAAGACATGACCAATTTCATACGGTAACAGACTTATGTTGACTATTTTAGTTCATTTTTTTTTCCAGTAAAGGAAACGTTTATTGATAATTAATGGGGGTTTATGATTAACCCCAAAGAATACAGATTATAGGAGGGATAGCCAGTTACTGACTAAGAATGATAAACTATAATGAGTAAAAGGATGTTGCGTTTTACACCAAGAAAATGTAGTAAATAAAACAAGTTCCAAAAAGTGTTGATAAGAGGAGAGAGAATCCTGAAAGAGTCGTCTATTCCTTTCCCCCCAGAGTGTCCAAAGGAAAGCTCGAATGAGAGCCAACCAAATTGTTTTCTTAGTACCACCAAAAGGATGTCCCACCAACAAAGATGACAGAGCGTCAGAGATATTATTAGGGCATGTGTATGACCATCCAAAAGTAGGCAAGACAGAATTCCAAAATCTAACATAAAGGAACAATGTAAAAAGAGATGGGTCAGCGTTTCGTTTTGTCTACAACACAAGTGGCACCAAGATGGAGATAAATGCCAGTGAGGAAAGCGGCGTTGCAAGCGATCAGCAGTATTGATGGCACCCCAACTGAGCTCCCATAGAAAGATTTAATCTTTTTTGGATATTTGTCTTTCCAAATCACTGCATAAAGATCAGTAGGAGCCCCATCCAATGCGCCCATTAAATCAGCCATTAGAGATTTGACAGTGAAATTAGAGGCAGGGTCAAGAGGCCACAGCCAAGTGTCAGAAGAGTTTCGCAATCTGATGGAGGCCAAGTAAGAAGATAGAGAGGCCCATTCCAATATCTCTAACTCAGTAAGGTTGCGTCGTAAATTTAAATTCCACGCACCAGTAGAGGGGACCCAGACATTTGCAACTGTGATTTCTGGATGTTCGGTGATGCGATAAAGTCGTGGATATTCTGTCGCAAGAATACCACAACTAAGCCAAGAATCATGCCAAAATGACGTAGAAGCCCCATCACCCAAATGTCGAACTATACGGTTGGCAACCAAATCAATATACTGACTGATGGACCGCCATGGAGATTTTGCTGAACCTCGGGAAATTGAAGTAGGCCATGTGCAGTCAGGAGGATAATACTTGGCCACAATAAGTTTCCTCCATAGGGCGGATCGCTCATTTAGGAAACGCCAGGCCCATTTAGCAAGAAGAGCAGAATTACGATGCTTAAAGTTCCCAATACCTAGCCCTCCCAGATGCTGAGGACGCTGAGAGATTGCCCAATTAACATTGTGCATGCCTCCATCACCTCGAATACCTTCCCAAAAGAAATCACGAACCATCTTATCAAGGCAACTAATGACTGTAGCAGGGACTTTGAACAAAGACAAATAATATGTAGGGAGACTAGAGAGAGTGGCCTGTATGAGCGTATGTCTACCCCCTTTCGAAATATAAGCGTACTTCCAATTATGTAGTTTATGCTGAAAACGTTCCACCACCGGTTGCCAAAAGTTGACATAATTTGAATTGCCACCCAATGGTAATCCCAGATAGGTAGTCGGCCAAGAGCCCTTTTTACATCCAAAAGCACACAACAATCCTTCCAAATCATCCTCTGTAACGTGAATCCCAAGGAGCTCACTCTTTGATAAATTAATTTTAAGACCAGATGCGCATTCAAAAATTCTGACAACATCAAATAGATTTTGTATGGCAGAGCGTTCAGCAATAGAAAACAACAAAGTGTCATCAGCAAACTGTAAATGATTCAGAGAAACAGCTGAAAGACCAATGGGATGAGCAATCGTGAGACCCAAGGAGGAACTATGGTCGAGTAGACAACTCAGGCAGTCAGCAACTAAAATGAATAAAAAGGGAGATAGAGGGTCTCCCTGCCTTATACCTCGAGATGGAATAATCTTGCCCCGAGGACGACCATTTAGGATAATGGAGTAATTGGCACTAGTAAGACAACCTCTTATCCATATGCGCCAAAGTTGGCCAAAGCCTTTAGCCTTGAGAACTGAATCAAGAAAAGCCCAATCCACCATGTCGAAAGCCTTCTCAAGATCAAGCTTCAGAACAATCCCAACCTTACGCGAAGAGGTCCAGTCGTCTATGAGCTCATTAGCCATCAAAGAAGCATCAAGAATTTGCCTGTTGGCAACAAAAGCCAGCTGATTGTCAGCTATGGTGAAAGGAAGGACCATCTTAAGTCTGTTTGAGAGAACACGAGCAACAATCTTGTATGCACATGGGATGAGACTTATCGGTCTATAATCAGAGACTGATTTAGAGTCCATTTTCTTTGGGATCAGGCAGATATAGGTCTCATTTAATTTAACATCGATGACCCAGAATTAAAGAAATCATTAATCAATAGCATGAAATCATCTTTAATAGTGGTCCAGAAAAACTTGAAGAATTCAGCTGTAAAACCATCAGGGCCAGGAGATTTGCAAGCACCAAGAGAGGATACTGCCGCAAAGACCTCATTTTCTGTGAAGGGTCGCTCTAGCTTGGATGATTGAGTAGAGGATATAGGACTCCAGTCTAGATTGGTGGGAAGGAAGCGCTGATTACCATCTTTTGTGAAGAGGGATGAGTAGAAAGCCAAGAATTCATTCTCAATAGCTTGTGCCGTCAATAGACTTGTGCCATCCCGCGATAAAATTTCAGAAATGGAGTTTTTACGGCGGCGGGCAGCGACAATTCGATGAAAAAAACTGGTATTTTCATCCCCTTCGAGAAGCTATTTAAGCTTGCATCGCTGTTGCCAATGAATATGTTCTTGAACTGTCAAGTTTTCAATCTGTTCTCGAAGCAAACGACGTTTGTTAATCTGTTCTATCGTGAGAGTGCCTCTATCTTCCAAGTCATCTAGATGCTTTAGCTGATCCACTAAAGAAGGAAGCTTAGAAGCTTCCATGCGTTGATTTGTATTCCATTCACGGATAGCGAATTTCAATCCTTTCAATTTCATCATAAAACCATGTCCCGGCCAATCAGTAATAGGATGCTGTCACCACCAGTCCTCAACCAGTTTGCGAAATGAAGAAACTTGTAACCATGCATTCTCAAATCTGAAAGGACAGGGACCCCAGACAATATTTCCGGATGATAGTGCCAATGGAAAATGATCAGATGTTGTTCTATCACGTTTAAGGGAAACTGAGCCAAATTTACGAAGGCAATTGTCCGTAATTAAAAACCGATCGAGGAGAGACAAATACTGTATAGGACCGGAACTGGACCAAGTAAAACAGCCATTTGTTAGTGGGATATCACATAATTGATGGTTGGTAATCCATTGATTAAAGGCGCGCATACGGGATGAAATTGTTCTGTCATGTGATTTCTCCCAAGACCATTTAGTAACATTAAAATCTCCACCAATAACCCAATTATCGCCACCCAATCCAGCCAAATCATCGAGCTCTTGCCAGAAGTCAGCTCTATACAAATTATCAGAGGGGCCATAAACTGCTGTGATCCAGAATGAGTAACCATCTGTCAACGATACATTAATCGAAACAGAAAAATGTCCCTGAATAACCTCTAGTACAGTGTAATCCGGCTCACTCCATAGAATAAGAATACCCCCTGATGAGTCAATGGCATCTAATGTTGTCCAGCCAATATAAGCGGAGCTCCAAATGGATTTGATTAAGGAAGAATCCACTGAAGAAAGTTTTGTTTCCTACAAAAGAACAATACCTGGATTATGTTGCTGGATGAGCTTTTTAACCAAAGTACGTTTCCTCCAGGAATTGAGTCCCCAAACGTTCCAAGAAATGAATTTCATTGGTCTTTCAAAGTGCCCTCTCGGATGGCCAATGTTGCTGTCTTATCATAGTGAATCGATGAGTGTAAGCCGAGGAGTTCTCTTTGTAGCTTGGGTTTTTTTACCTGTATTAGTGCTGGTTTTTTTTGGCTTCACAGGTGGAAGGGAGTTTGGAATGGCCATAACACATAAGCCATGGTTGGATAAGAGAGAGGCTAAGTCTCGAAGGTTGAAAGGCAAGTTTGTTGTGCTTGGCTGGTGGCTAAATGGGGCTGGTTGTTCTTGATGGGAGCTAATGTTAGGTGGAAGTGGGGGAAGGGAGCATATTGGTAGACTGATTCATCTGGATCATCACCAAATATGGTCTCATCTATGGGAAGGGAGGCAAATTCGACATCTTTTGCAGGGCTGGAGAGATAGCCTTCGGTGTCGAATCCGGCAAAAGGGAGATTTTGGTTGTTGGTTGATGTGGAAAAAGTGTTGCCACGGTGGAGAGAAGTGGGCCCCTCCCGAAAAGTTACCGTGGAGAAAGAAGGCTGTGAAAACGATGGTGAAGCCGAAGTATTGGGGCTCGAATTTAGGTTTTGAAAATTGAAGGAAGGCGTTGGTGAATCCGGGTTTGTAGGGCTTATCAATTGAATTTAGGAGTTGTGGTCGGTCAGATTATCATGGCAGTTGACTGAGTAAAGGCTGGGATTAGTTGTTGTTGCTGGGCTGGGAATAGATTGTGCTGTTGGGCCGAGGATTGCAATTGGGCTTGGGTTTATGACTGGGCTGGGATTTGTAGTTGGGCTAGGGCTTAAGATTGAGCTAGGATTTTCGGATGGCCTAGGATTTAATATTGGGCTGAGATTGGCAGATGGGCTAGGGTTTACAACCGTGCAGGGGTTTGCAGATGAGCTAGGGCATGTGGTTGGCCTATGGTGTGTGTTTTGACTAGGGTTTTCGGTGGAAGAAAAAATTAAATCTTGTGTGGGGTCTACAAGATTTGTTGAGGGAGGCAGCCGGTTTTGATTTCCCCTAAAGGTTGGAGATTCCTCCGCGTGAATCAAGTAGGGAGAGAGAGAGGGAGAGTCGGATTCGGCTTCTAAATATGGGGAGAGAGAGGAAGTTGACTCAAAATATTTGGATTTACCTTTTTCAGAATCCAAGAGATTTCCTTTTTCAACACCTTCTTTAATGACGTTTTCTTTCATCTGTAAAGCCTCTTTCTGCCGGCCCTGGCTTCCGATAGGTGCTGCCTGAATAGTTATGGTTGAGACTACTCCGACCAGCTCTTCTGGAAGCCGTAGTTGACATGGAACGAAGCCCCGACTGTTGTCTTGAACCTTTATGCGGGCAAAAGAAAGGTTTAAACCTCGTTCTGTCTGGTTGGAGGGATGTAGATATCCCCCACACTTATCCCCTATATATCTAAATGTTGCATCTGTCCATGAGGTAATTGGTAGGTGGTAGATGTCGATCCATCCTCCCTTTGTTGCTATCATTTGTTGCTGGAATGATGATGGATTGGTTGGTGAGAGAAATTTGAGTTTCCTCTGTTCTATGGTTGTCCAATCCAACTTTTTGCACAAGTCTTGAGCTAATTCCTTGTTGTATACATGGAGCAAGGCTTTGTCGTCCGAGATGGGATTGATAGTACAACGGGTTGAGAGGGAAACTTGAAGAGCTGCACGAATATCCGGCCATGTATCGCTGCTCAAGAACCGCTGGACAATTATCATAGCCTTCCAATCGAATTGAGGGAGGATTGGTGACGAGCTTGATATAATCTGTTCGGATTGTTGGTTGATGGCTTGTGGTTTAACAACTTCACTGTATGATTTTGGGTTGGTGGTTTGTGGTGTGATGGAGGAGCTGGATGTGGTGGCCTTCCCGGGGTAGTCTGATATCAAAGAGAAGAAAGAGAACCAACCTCTTTTTTCCTCCATGGCAGGGATGAGGATATTTGTATGACGGCCTGACTGTTCCAGCAAGGAAATCTCTGCAAAAAAGCCATACTTGTTGCTGCGCTTTTCTATCCAAAAAGTGTCTCCCTGATCGTTTAACTTCTTGAAAATTTTTTGGTTGCACGGTTCTTTGAAGAGAGTTGAATGAGGAGGCAAGCCATTCAAAAGAATACCTTGAAACAAAAATCGAGTGTATGTTGGAGTGACTTTGTTCCGATAGTTTGAAATGTTTTCTATTGTTTGATGCTAGCGGGAATAAGGAGAAGAGTTTTCTGTCTATATGGATGGATCGGATAGTGGAAGGAGTGGTGGTCGTCGGTGGCTGAGGCATGGTGGTCGGAGTTAGAAAAGGAAAGATATGGGCTGAGAGGGGGGAATGGGAGAGGAGAGAGGAGAGAGCATTTTTTGGTGGTGAAGAGTTTTTGTTTTTTTATTTTATTTAGTTCATTTTTTTCTTTAATGAATGGTTTCACATATAGAGGATTTAAATGGTTTTCATGCTCCTTTTTCGTTCTTGAACATCGTTTAGATTGGATACCGCGATGGCTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAATGTTGGCTTCAAGCAGTCAGTCTCTGTCGGATATAAATTGGGTCTTGTCAGAGGTGTTAGCAGGTAAGGAGAGAATAAAGTGCCTTCCATTTTACCCATGCACGAATTCATACGTATATCTCCTTGAAGTTTGTGTCGGCAATAATTTTCTTTACGTGAAAGAACGCTTAATTCTTGTAATTTAACAGTTCATATTACATTGTTCCTGTGTTCTAAAGTATGTGTTACTTGAGTACAGTTGACATTTCAAATAGTCTCTCTCAAAATATTTAGTCCTTCCAGCAACAGGCTTGTTTGGATGTGCTTAAAAACACTTCTTTTTTTATTTTATTTTATTTTTATTTTTACACTTAAAAACATATTTTTAAGTATTTAGAAAGTGATTCCAAACCAGCATGATGGACATAACTTTTTGAATTGTTAATAGAGAGCCGGTCAAGTATGACATGAAAAGGGGTCTAGTGTAGTATTCATGAAAGTACATCTCTGTCTCCCAATCTCTGCACAGCACTCATAGGTCTTTCTCCAGGGCCGATTGAAATCAGCCTCATACATTGTGCAATAGTGTCAAGTTGGGAAGCTACATTGCCTTCTTTCTCTCTTTCTTAATTTTTTACATTGTTCTCTTTGGTGAGGATTGTGGAATTCTCGTGTTTGTGTGATTAAGCCTTGTTGTTTTGCCCTTAAGAAGAAGTGTTTTTTTCCTAGTAGTTGCAAGTTTGGAAGCGATAGTTTAGCTTTAGAAGTTGGTTTGTTTTGTGGTTTGATCCTCACACTTTTGGTCTTAAAGGAATTCTTTCCTCATCTGCTCATTGGTCTTTCAGTTGACTTTGGCTTTAAAGTTGTGTTTTCTAGCTTTGGTCTCTTTTCTGGAGCTGGTTTGTTAGGTCTTAAGTGTTTGCTTTTTGACGTCTTCCCTCTTTTGTAGCTTAATTGTATTGTCTTCTTTTGTTTTCCTTTTCTTTTTTTTTTTTTGAAGGTTAATGTATTTTTGAGCATTTGTATCTTATTTTGCAATGAAAAGATCGGTTTCCTTCCACAAAAAAGAAAAAGAGAAAGAATTCTTAATAGAACAGTTTGTTTGACCGGCTGTTTTCTTTGTGACTTTATGGGAAATTTGGCCGGACAGATATAGGAGAGTCCTTAGTAATAGAGGAAATTTTTTGGAGGAGGAGTTGAGCCTTGGCCAAGTTTAATATCTCTTTTGGGCTTTTGTGTCACTAAGGAACTTTAGCGATTACATCTCTCATTCCTTTGAATGCATCTCTTTGTAGTTCTTTCTTTTCTGTTTTTGTTGCTTTCTTTTTTTGGGTCTCATTTTGGTCAAGGCTTTCCCTCAATGAAAGTTGTTCTTTTCATTTTTTGGGGGGAATAGAAAAGACGGGAGATACCAATTTGCTCATCTCTCAATTGGCCATTAGTCCATTGTTCTTGTTAGTGTACTGCCTTCTACTGAATGCTTTCCTTTTTTTTCTTCTGAAGTGTGCTTGCTTCCTTTCCTGATGACGTGAAAGAGAAGCTTGCAGGAATTGAAGAGAACCGAAGTAAATTTCAAAGCTTGTACGAATCTGTGAACTCTCTTTCGACAGTAGATGCACTTAGGCTATTCAATGACGATATTACGGCACAACGCACGAAAGAAGAGCGTGTCAATGCAAATACAAATTCCCAATCAAAGGATTTGTTAAAGAAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTTTACACAAATCACCTGCTCTGAATGTTCATTTACACGAAGAACAGTAGATTTTGCTGTAACTTATCATCAATGCAACTTCTGTAGGTTCAGCATTTGTTTTCTTTAAATTTTAGGTCTTGACCTTGTCTGTACTTGTTGCAGTTATGTAAATATTTATAAATGGAAATTGACATATCATCCTTTAAACTTGTAATGTATTTGTTTGGCAAACAACAGATGAACAGAAACATGGGGAATCCCTTGTAATGATTCTTAGAATATTTCTTTACCAGAGAGCATTTTCCACTGGTGTGTGAATGGTTGATGTCCCTTGTCTGGAGC

mRNA sequence

ATGGAACCTTCCCGTGTGTCTAAGCTTTCTTTGAGCAAAATTGGGGCTATAATTGGATACCGCGATGGCTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAATGTTGGCTTCAAGCAGTCAGTCTCTGTCGGATATAAATTGGGTCTTGTCAGAGGTGTTAGCAGTGTGCTTGCTTCCTTTCCTGATGACGTGAAAGAGAAGCTTGCAGGAATTGAAGAGAACCGAAGTAAATTTCAAAGCTTGTACGAATCTGTGAACTCTCTTTCGACAGTAGATGCACTTAGGCTATTCAATGACGATATTACGGCACAACGCACGAAAGAAGAGCGTGTCAATGCAAATACAAATTCCCAATCAAAGGATTTGTTAAAGAAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTTTACACAAATCACCTGCTCTGAATGTTCATTTACACGAAGAACAGTAGATTTTGCTGTAACTTATCATCAATGCAACTTCTGTAGGTTCAGCATTTGTTTTCTTTAAATTTTAGGTCTTGACCTTGTCTGTACTTGTTGCAGTTATGTAAATATTTATAAATGGAAATTGACATATCATCCTTTAAACTTGTAATGTATTTGTTTGGCAAACAACAGATGAACAGAAACATGGGGAATCCCTTGTAATGATTCTTAGAATATTTCTTTACCAGAGAGCATTTTCCACTGGTGTGTGAATGGTTGATGTCCCTTGTCTGGAGC

Coding sequence (CDS)

ATGGAACCTTCCCGTGTGTCTAAGCTTTCTTTGAGCAAAATTGGGGCTATAATTGGATACCGCGATGGCTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAATGTTGGCTTCAAGCAGTCAGTCTCTGTCGGATATAAATTGGGTCTTGTCAGAGGTGTTAGCAGTGTGCTTGCTTCCTTTCCTGATGACGTGAAAGAGAAGCTTGCAGGAATTGAAGAGAACCGAAGTAAATTTCAAAGCTTGTACGAATCTGTGAACTCTCTTTCGACAGTAGATGCACTTAGGCTATTCAATGACGATATTACGGCACAACGCACGAAAGAAGAGCGTGTCAATGCAAATACAAATTCCCAATCAAAGGATTTGTTAAAGAAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTTTACACAAATCACCTGCTCTGAATGTTCATTTACACGAAGAACAGTAG

Protein sequence

MEPSRVSKLSLSKIGAIIGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPALNVHLHEEQ
BLAST of Lsi04G000490 vs. TrEMBL
Match: E5GCK6_CUCME (Aquarius OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.5e-58
Identity = 122/142 (85.92%), Postives = 128/142 (90.14%), Query Frame = 1

Query: 18  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEEN 77
           IGYRDGLIAGKEAAAQEGFN+GFKQSVSVGYKLGLVRGVSSVLAS PDD+KEKLAG  EN
Sbjct: 49  IGYRDGLIAGKEAAAQEGFNIGFKQSVSVGYKLGLVRGVSSVLASLPDDLKEKLAGTPEN 108

Query: 78  RSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGRLRK 137
           +SKFQSLYESVNSLSTVDALRLFN DIT Q TKEE V+ANTNSQ+ DLLKKN DYGRL K
Sbjct: 109 QSKFQSLYESVNSLSTVDALRLFNGDITTQHTKEEFVSANTNSQTMDLLKKNPDYGRLGK 168

Query: 138 FYGELEALLHKSPALNVHLHEE 160
           FY EL A L +SPALNVHLHEE
Sbjct: 169 FYEELAAHLPQSPALNVHLHEE 190

BLAST of Lsi04G000490 vs. TrEMBL
Match: A0A0A0KTN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623580 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.3e-56
Identity = 120/142 (84.51%), Postives = 127/142 (89.44%), Query Frame = 1

Query: 18  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEEN 77
           IGYRDGL+AGKEAAAQEGFN+GFKQSVSVGYKLGLVRGVSSVLAS P D+KEKLAGI EN
Sbjct: 77  IGYRDGLVAGKEAAAQEGFNIGFKQSVSVGYKLGLVRGVSSVLASLPADLKEKLAGIPEN 136

Query: 78  RSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGRLRK 137
           +SKFQSLYESVNSLSTVDAL LFN DIT QRTKE  V ANTNSQ+ DLLK+N DYGRL K
Sbjct: 137 QSKFQSLYESVNSLSTVDALSLFNGDITTQRTKEVFVGANTNSQTIDLLKENPDYGRLGK 196

Query: 138 FYGELEALLHKSPALNVHLHEE 160
           FY EL ALL +SPALNVHLHEE
Sbjct: 197 FYEELAALLPQSPALNVHLHEE 218

BLAST of Lsi04G000490 vs. TrEMBL
Match: W9SFE1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027878 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.3e-34
Identity = 82/141 (58.16%), Postives = 103/141 (73.05%), Query Frame = 1

Query: 18  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEEN 77
           IGYRDG+IAGKEAAAQEGFN+GFKQSVSVGYK G+VRGV+S LA  PD +KEKL   EE 
Sbjct: 74  IGYRDGVIAGKEAAAQEGFNIGFKQSVSVGYKWGIVRGVTSALALLPDGLKEKLIETEEK 133

Query: 78  RSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGR--L 137
           R++FQ LYES +SLST DAL+ FND I A+R +E+  N   +S    L ++ SD  R  L
Sbjct: 134 RTEFQKLYESAHSLSTTDALKRFNDSIVAKRIREQGENVEASSDEGHLNQQRSDSDRKQL 193

Query: 138 RKFYGELEALLHKSPALNVHL 157
             +Y EL++LL +SP + + L
Sbjct: 194 DSYYEELQSLLLESPRMKIEL 214

BLAST of Lsi04G000490 vs. TrEMBL
Match: B9GWL1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20050g PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.1e-33
Identity = 82/147 (55.78%), Postives = 102/147 (69.39%), Query Frame = 1

Query: 18  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEEN 77
           IGYRDGLIAGKE +AQEGFNVGFKQSV VGY  GLVRGV+SV+A  PDD+KEKL   +E 
Sbjct: 66  IGYRDGLIAGKEDSAQEGFNVGFKQSVLVGYNWGLVRGVTSVVACLPDDLKEKLIETQEK 125

Query: 78  RSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSD----YG 137
           R+KFQ LYESV+S+STVDAL+ F+DDI  ++  E+R        S D+ + N D      
Sbjct: 126 RNKFQGLYESVHSISTVDALKFFHDDILRKKAMEQR---ELEKASSDVARMNKDDSSCCS 185

Query: 138 RLRKFYGELEALLHKSPALNVHLHEEQ 161
            L  + GEL++LL  SP +  HL  +Q
Sbjct: 186 NLENYVGELQSLLLDSPTIKSHLSVKQ 209

BLAST of Lsi04G000490 vs. TrEMBL
Match: A0A067H6D2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027192mg PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 1

Query: 18  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEEN 77
           IGYRDGL+AGKE +AQEGFN+GFK+S   GY  GLVRGV+S L   P+++KE L   +E 
Sbjct: 73  IGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEK 132

Query: 78  RSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGRLRK 137
           R+KFQSLYESV+SLST DAL+LF+DDI  ++  E+   A   S    L  ++SD  RL  
Sbjct: 133 RNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLEN 192

Query: 138 FYGELEALLHKSPALNVHLHEEQ 161
            +GELE+++ ++PA+ VHL  ++
Sbjct: 193 HFGELESIILETPAIQVHLEVQK 215

BLAST of Lsi04G000490 vs. TAIR10
Match: AT3G15750.1 (AT3G15750.1 Essential protein Yae1, N-terminal)

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-25
Identity = 64/140 (45.71%), Postives = 93/140 (66.43%), Query Frame = 1

Query: 19  GYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENR 78
           GYRDG++AGKEA AQEG+N G+K+SV  GY+ GLVRGVSS LA  PD+++EKL   +E R
Sbjct: 59  GYRDGIVAGKEAIAQEGYNFGYKESVLNGYQFGLVRGVSSALAFLPDELREKLIDKQETR 118

Query: 79  SKFQSLYESVNSLSTVDALRLFNDDITA----QRTKEERVNANTNSQSKDLLKKNSDYGR 138
            KFQ L+ SV++LST  A++ F + +T     +++ EE  ++ ++S S   +   +D G 
Sbjct: 119 EKFQKLHSSVHALSTEVAMKRFYETLTTKQGEEKSGEEGPDSCSDSGSGSGVNVTTDLG- 178

Query: 139 LRKFYGELEALLHKSPALNV 155
              +  EL +LL KSP + V
Sbjct: 179 --SYVTELSSLLDKSPTIEV 195

BLAST of Lsi04G000490 vs. TAIR10
Match: AT1G34570.1 (AT1G34570.1 Essential protein Yae1, N-terminal)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-23
Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 1

Query: 19  GYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEENR 78
           GYRDG++ GKEA AQEG+N G+K+SV  GYK G+VRGVSS LA  P + +EKL   +E R
Sbjct: 68  GYRDGIVVGKEAIAQEGYNFGYKESVLAGYKFGIVRGVSSALAFLPVEFREKLIDEQETR 127

Query: 79  SKFQSLYESVNSLSTVDALRLFNDDITA----QRTKEERVNANTNSQSKDLLKKNSDYGR 138
            KFQ L+ SV++LST  A++ F + +T     +++ EE  ++ + S S   +   +D G 
Sbjct: 128 EKFQKLHSSVHALSTEVAMKQFYETLTTKQGEEKSGEEGPDSCSVSGSCSGVNVTADLG- 187

Query: 139 LRKFYGELEALLHKSPALNV 155
              +  EL +LL KSP + V
Sbjct: 188 --SYVTELSSLLDKSPTIEV 204

BLAST of Lsi04G000490 vs. TAIR10
Match: AT1G34550.1 (AT1G34550.1 Protein of unknown function (DUF616))

HSP 1 Score: 48.1 bits (113), Expect = 5.7e-06
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1

Query: 58  SVLASFPDDVKEKLAGIEENRSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNAN 117
           +VLA  PD+++EKL   +E R KFQ L+  V++LST  A++ F   +T   TKE    + 
Sbjct: 3   NVLAFLPDELREKLIDEQETREKFQRLHSYVHALSTEVAMKRFYGALT---TKEGISGSG 62

Query: 118 TNSQSKDLLKKNSDYGRLRKFYGELEALLHKSPAL 153
            N+         SD+G    +  EL +LL KSP +
Sbjct: 63  VNA--------TSDWG---SYVTELSSLLEKSPKI 83

BLAST of Lsi04G000490 vs. NCBI nr
Match: gi|659092143|ref|XP_008446921.1| (PREDICTED: uncharacterized protein LOC103489487 [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 1.0e-57
Identity = 122/143 (85.31%), Postives = 129/143 (90.21%), Query Frame = 1

Query: 18  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEEN 77
           IGYRDGLIAGKEAAAQEGFN+GFKQSVSVGYKLGLVRGVSSVLAS PDD+KEKLAG  EN
Sbjct: 77  IGYRDGLIAGKEAAAQEGFNIGFKQSVSVGYKLGLVRGVSSVLASLPDDLKEKLAGTPEN 136

Query: 78  RSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGRLRK 137
           +SKFQSLYESVNSLSTVDALRLFN DIT Q TKEE V+ANTNSQ+ DLLKKN DYGRL K
Sbjct: 137 QSKFQSLYESVNSLSTVDALRLFNGDITTQHTKEEFVSANTNSQTMDLLKKNPDYGRLGK 196

Query: 138 FYGELEALLHKSPALNVHLHEEQ 161
           FY EL A L +SPALNVHLHEE+
Sbjct: 197 FYEELAAHLPQSPALNVHLHEER 219

BLAST of Lsi04G000490 vs. NCBI nr
Match: gi|307136393|gb|ADN34203.1| (aquarius [Cucumis melo subsp. melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-57
Identity = 122/142 (85.92%), Postives = 128/142 (90.14%), Query Frame = 1

Query: 18  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEEN 77
           IGYRDGLIAGKEAAAQEGFN+GFKQSVSVGYKLGLVRGVSSVLAS PDD+KEKLAG  EN
Sbjct: 49  IGYRDGLIAGKEAAAQEGFNIGFKQSVSVGYKLGLVRGVSSVLASLPDDLKEKLAGTPEN 108

Query: 78  RSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGRLRK 137
           +SKFQSLYESVNSLSTVDALRLFN DIT Q TKEE V+ANTNSQ+ DLLKKN DYGRL K
Sbjct: 109 QSKFQSLYESVNSLSTVDALRLFNGDITTQHTKEEFVSANTNSQTMDLLKKNPDYGRLGK 168

Query: 138 FYGELEALLHKSPALNVHLHEE 160
           FY EL A L +SPALNVHLHEE
Sbjct: 169 FYEELAAHLPQSPALNVHLHEE 190

BLAST of Lsi04G000490 vs. NCBI nr
Match: gi|778706723|ref|XP_011655902.1| (PREDICTED: uncharacterized protein YAE1-like [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 3.3e-56
Identity = 120/142 (84.51%), Postives = 127/142 (89.44%), Query Frame = 1

Query: 18  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEEN 77
           IGYRDGL+AGKEAAAQEGFN+GFKQSVSVGYKLGLVRGVSSVLAS P D+KEKLAGI EN
Sbjct: 77  IGYRDGLVAGKEAAAQEGFNIGFKQSVSVGYKLGLVRGVSSVLASLPADLKEKLAGIPEN 136

Query: 78  RSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGRLRK 137
           +SKFQSLYESVNSLSTVDAL LFN DIT QRTKE  V ANTNSQ+ DLLK+N DYGRL K
Sbjct: 137 QSKFQSLYESVNSLSTVDALSLFNGDITTQRTKEVFVGANTNSQTIDLLKENPDYGRLGK 196

Query: 138 FYGELEALLHKSPALNVHLHEE 160
           FY EL ALL +SPALNVHLHEE
Sbjct: 197 FYEELAALLPQSPALNVHLHEE 218

BLAST of Lsi04G000490 vs. NCBI nr
Match: gi|645301878|ref|XP_008245884.1| (PREDICTED: uncharacterized protein LOC103344035 [Prunus mume])

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 79/139 (56.83%), Postives = 104/139 (74.82%), Query Frame = 1

Query: 18  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEEN 77
           +GYR+G+IAGKEA++QEGFN+GFKQSV VGY  GLVRGV+S LA+ PD ++EKL G E+ 
Sbjct: 81  VGYREGVIAGKEASSQEGFNIGFKQSVLVGYNWGLVRGVTSALANLPDGLREKLIGTEDQ 140

Query: 78  RSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGRLRK 137
            +  Q LYESV+SLST DALRLFND+I  ++ +E+  NA+T+S    L ++  D   LR 
Sbjct: 141 ITGLQGLYESVHSLSTTDALRLFNDEIMDKKAREQSENADTSSLEAGLPEQIPDRSGLRN 200

Query: 138 FYGELEALLHKSPALNVHL 157
            Y EL +LL +SPA+ VHL
Sbjct: 201 HYAELRSLLFESPAIKVHL 219

BLAST of Lsi04G000490 vs. NCBI nr
Match: gi|703155529|ref|XP_010111225.1| (hypothetical protein L484_027878 [Morus notabilis])

HSP 1 Score: 152.5 bits (384), Expect = 6.1e-34
Identity = 82/141 (58.16%), Postives = 103/141 (73.05%), Query Frame = 1

Query: 18  IGYRDGLIAGKEAAAQEGFNVGFKQSVSVGYKLGLVRGVSSVLASFPDDVKEKLAGIEEN 77
           IGYRDG+IAGKEAAAQEGFN+GFKQSVSVGYK G+VRGV+S LA  PD +KEKL   EE 
Sbjct: 74  IGYRDGVIAGKEAAAQEGFNIGFKQSVSVGYKWGIVRGVTSALALLPDGLKEKLIETEEK 133

Query: 78  RSKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNANTNSQSKDLLKKNSDYGR--L 137
           R++FQ LYES +SLST DAL+ FND I A+R +E+  N   +S    L ++ SD  R  L
Sbjct: 134 RTEFQKLYESAHSLSTTDALKRFNDSIVAKRIREQGENVEASSDEGHLNQQRSDSDRKQL 193

Query: 138 RKFYGELEALLHKSPALNVHL 157
             +Y EL++LL +SP + + L
Sbjct: 194 DSYYEELQSLLLESPRMKIEL 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
E5GCK6_CUCME9.5e-5885.92Aquarius OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KTN7_CUCSA2.3e-5684.51Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623580 PE=4 SV=1[more]
W9SFE1_9ROSA4.3e-3458.16Uncharacterized protein OS=Morus notabilis GN=L484_027878 PE=4 SV=1[more]
B9GWL1_POPTR8.1e-3355.78Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20050g PE=4 SV=1[more]
A0A067H6D2_CITSI1.8e-3252.45Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027192mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G15750.12.5e-2545.71 Essential protein Yae1, N-terminal[more]
AT1G34570.11.4e-2344.29 Essential protein Yae1, N-terminal[more]
AT1G34550.15.7e-0636.84 Protein of unknown function (DUF616)[more]
Match NameE-valueIdentityDescription
gi|659092143|ref|XP_008446921.1|1.0e-5785.31PREDICTED: uncharacterized protein LOC103489487 [Cucumis melo][more]
gi|307136393|gb|ADN34203.1|1.4e-5785.92aquarius [Cucumis melo subsp. melo][more]
gi|778706723|ref|XP_011655902.1|3.3e-5684.51PREDICTED: uncharacterized protein YAE1-like [Cucumis sativus][more]
gi|645301878|ref|XP_008245884.1|3.6e-3456.83PREDICTED: uncharacterized protein LOC103344035 [Prunus mume][more]
gi|703155529|ref|XP_010111225.1|6.1e-3458.16hypothetical protein L484_027878 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019191Essential_protein_Yae1_N
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006308 DNA catabolic process
biological_process GO:0006281 DNA repair
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0048476 Holliday junction resolvase complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0008821 crossover junction endodeoxyribonuclease activity
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G000490.1Lsi04G000490.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019191Essential protein Yae1, N-terminalPFAMPF09811Yae1_Ncoord: 19..56
score: 8.6
NoneNo IPR availablePANTHERPTHR18829FAMILY NOT NAMEDcoord: 18..160
score: 3.5