Lsi03G022840 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G022840
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTransmembrane protein, putative
Locationchr03 : 33707709 .. 33708434 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTGCCAGAATCTTCCTCAGCTGTTAACCTTGAAACTGCTGAAGGTTGGGATCAGGGTTGGGATGATGATTGGGATGAAGAAAATGCTGTGAAATCACCAGGGGGGCGCCATATTGGAAACATATCAGCTAATGGCCTTACTGCTAGGTCCAACAAAGATGGTTGGGAGAATGATTGGGATGTTTAGTTAATGAAACAGCCTGAGAAGAAAACAAACTTCTGGTCTCTCGACAATTTGATCAGTAGTAGGTGACTGGAAGGCAGGAAGAACAATGTGACTCACATAACGTTACCACTGAGGTTATTCCATAGTTGAATATAAACCTTCTTCCCACTTCTGATTAGATTGTAGAGTTTTTTGCTGTCGCATGTTGGGTCAGAAGCCATAAAGCCGGTCCATACAAAATTTTGGGTTTGTTTTGGTGGGATGTAGAATGCATGGCTTTTTATGTCTTTTTTTAATTTCTACTTTAGATAACAGTTCCAATTTTTTCTATATGATAGCTTTACAATATATAATATATTCATGCGAGCTTTAAAATTATGATTGTGTTTGCCATTGCAAAACTTTGCAAAGAGAACCGTAAATAATACAATACACATGCTCATGTGCGTGCGTATCTTTTTGAGAATGCGGAACAAGCTCTCTCTCTCTCTCTCTGTGCAATAATTTTGAACAGACACTCTTCTGAATTACATTTTTTGTATTGATTACCGGTAA

mRNA sequence

ATGGCACTGCCAGAATCTTCCTCAGCTGTTAACCTTGAAACTGCTGAAGGTTGGGATCAGGGTTGGGATGATGATTGGGATGAAGAAAATGCTGTGAAATCACCAGGGGGGCGCCATATTGGAAACATATCAGCTAATGGCCTTACTGCTAGGTCCAACAAAGATGGTTGGGAGAATGATTGGGATGTTTAGTTAATGAAACAGCCTGAGAAGAAAACAAACTTCTGGTCTCTCGACAATTTGATCAGTAGTAGGTGACTGGAAGGCAGGAAGAACAATGTGACTCACATAACGTTACCACTGAGGTTATTCCATAGTTGAATATAAACCTTCTTCCCACTTCTGATTAGATTGTAGAGTTTTTTGCTGTCGCATGTTGGGTCAGAAGCCATAAAGCCGGTCCATACAAAATTTTGGGTTTGTTTTGGTGGGATGTAGAATGCATGGCTTTTTATGTCTTTTTTTAATTTCTACTTTAGATAACAGTTCCAATTTTTTCTATATGATAGCTTTACAATATATAATATATTCATGCGAGCTTTAAAATTATGATTGTGTTTGCCATTGCAAAACTTTGCAAAGAGAACCGTAAATAATACAATACACATGCTCATGTGCGTGCGTATCTTTTTGAGAATGCGGAACAAGCTCTCTCTCTCTCTCTCTGTGCAATAATTTTGAACAGACACTCTTCTGAATTACATTTTTTGTATTGATTACCGGTAA

Coding sequence (CDS)

ATGGCACTGCCAGAATCTTCCTCAGCTGTTAACCTTGAAACTGCTGAAGGTTGGGATCAGGGTTGGGATGATGATTGGGATGAAGAAAATGCTGTGAAATCACCAGGGGGGCGCCATATTGGAAACATATCAGCTAATGGCCTTACTGCTAGGTCCAACAAAGATGGTTGGGAGAATGATTGGGATGTTTAG

Protein sequence

MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTARSNKDGWENDWDV
Homology
[Close]
BLAST of Lsi03G022840 vs. TrEMBL
Match: A0A061EJ52_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019697 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.6e-22
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 1   MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTAR-SNKDGWEN 60
           M LPES +A+ +ETAEGWDQGWDD+WDE+ AVKSP GRH+ NISANGLTAR SN+DGWEN
Sbjct: 329 MGLPESMAAIEVETAEGWDQGWDDEWDEDKAVKSPVGRHVANISANGLTARSSNRDGWEN 388

Query: 61  DWD 63
           DWD
Sbjct: 389 DWD 391

[Close]
BLAST of Lsi03G022840 vs. TrEMBL
Match: W9SB13_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006097 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.6e-22
Identity = 49/63 (77.78%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 1   MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTARS-NKDGWEN 60
           MALPES SA ++ETAEGWDQGWDDDWD+++AVKSPG RH+G+ISANGLT+RS NKDGWE+
Sbjct: 81  MALPESVSAADVETAEGWDQGWDDDWDDDSAVKSPGARHVGSISANGLTSRSPNKDGWED 140

Query: 61  DWD 63
           +WD
Sbjct: 141 NWD 143

[Close]
BLAST of Lsi03G022840 vs. TrEMBL
Match: D7SQY9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g01330 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-21
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 1   MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTAR-SNKDGWEN 60
           M LPESS AVN+ETA GWD+GWDDDWDE+ AVKSPGGR++G+IS+NGLT R SN++GWEN
Sbjct: 257 MGLPESSPAVNVETAAGWDEGWDDDWDEDKAVKSPGGRYVGSISSNGLTTRSSNREGWEN 316

Query: 61  DWD 63
           DWD
Sbjct: 317 DWD 319

[Close]
BLAST of Lsi03G022840 vs. TrEMBL
Match: K4CS24_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.6e-21
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 1   MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTARSN-KDGWEN 60
           M +PES+SA N+  A+GWDQGWDDDWDEENAVKSPGG   GNISANGLT+RS+ KDGWEN
Sbjct: 388 MGMPESASAANVVAADGWDQGWDDDWDEENAVKSPGGHTYGNISANGLTSRSSKKDGWEN 447

Query: 61  DWD 63
           DWD
Sbjct: 448 DWD 450

[Close]
BLAST of Lsi03G022840 vs. TrEMBL
Match: V4UT90_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011425mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-20
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 1   MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTARS-NKDGWEN 60
           M LPES SA+N+ETAEGWD+GWDDDWDE NAVKSPG   IG+ISANGLT+RS N+DGWE+
Sbjct: 480 MGLPESVSAMNVETAEGWDEGWDDDWDENNAVKSPGASRIGSISANGLTSRSPNRDGWEH 539

Query: 61  DWD 63
           DW+
Sbjct: 540 DWN 542

[Close]
BLAST of Lsi03G022840 vs. TAIR10
Match: AT3G51580.2 (AT3G51580.2 unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-14
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1 

Query: 3   LPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIG-NISANGLTARS-NKDGWEND 62
           L   S   ++ETA+ WD+GWDDDWDE NAVKSPG      +ISANGLTAR+ N+DGW++D
Sbjct: 349 LENESGVHDVETAD-WDEGWDDDWDENNAVKSPGSAAKSVSISANGLTARAPNRDGWDHD 408

[Close]
BLAST of Lsi03G022840 vs. NCBI nr
Match: gi|703149674|ref|XP_010109662.1| (hypothetical protein L484_006097 [Morus notabilis])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-21
Identity = 49/63 (77.78%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 1   MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTARS-NKDGWEN 60
           MALPES SA ++ETAEGWDQGWDDDWD+++AVKSPG RH+G+ISANGLT+RS NKDGWE+
Sbjct: 81  MALPESVSAADVETAEGWDQGWDDDWDDDSAVKSPGARHVGSISANGLTSRSPNKDGWED 140

Query: 61  DWD 63
           +WD
Sbjct: 141 NWD 143

[Close]
BLAST of Lsi03G022840 vs. NCBI nr
Match: gi|590653813|ref|XP_007033526.1| (Uncharacterized protein TCM_019697 [Theobroma cacao])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-21
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 1   MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTAR-SNKDGWEN 60
           M LPES +A+ +ETAEGWDQGWDD+WDE+ AVKSP GRH+ NISANGLTAR SN+DGWEN
Sbjct: 329 MGLPESMAAIEVETAEGWDQGWDDEWDEDKAVKSPVGRHVANISANGLTARSSNRDGWEN 388

Query: 61  DWD 63
           DWD
Sbjct: 389 DWD 391

[Close]
BLAST of Lsi03G022840 vs. NCBI nr
Match: gi|731398656|ref|XP_010653333.1| (PREDICTED: uncharacterized protein LOC100253448 [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-21
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 1   MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTAR-SNKDGWEN 60
           M LPESS AVN+ETA GWD+GWDDDWDE+ AVKSPGGR++G+IS+NGLT R SN++GWEN
Sbjct: 257 MGLPESSPAVNVETAAGWDEGWDDDWDEDKAVKSPGGRYVGSISSNGLTTRSSNREGWEN 316

Query: 61  DWD 63
           DWD
Sbjct: 317 DWD 319

[Close]
BLAST of Lsi03G022840 vs. NCBI nr
Match: gi|970054210|ref|XP_015088739.1| (PREDICTED: uncharacterized protein LOC107031781 [Solanum pennellii])

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-21
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 1   MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTARSN-KDGWEN 60
           M +PES+SA N+  A+GWDQGWDDDWDEENAVKSPGG   GNISANGLT+RS+ KDGWEN
Sbjct: 384 MGMPESASAANVVAADGWDQGWDDDWDEENAVKSPGGHTYGNISANGLTSRSSKKDGWEN 443

Query: 61  DWD 63
           DWD
Sbjct: 444 DWD 446

[Close]
BLAST of Lsi03G022840 vs. NCBI nr
Match: gi|460401559|ref|XP_004246288.1| (PREDICTED: uncharacterized protein LOC101261947 [Solanum lycopersicum])

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-21
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 1   MALPESSSAVNLETAEGWDQGWDDDWDEENAVKSPGGRHIGNISANGLTARSN-KDGWEN 60
           M +PES+SA N+  A+GWDQGWDDDWDEENAVKSPGG   GNISANGLT+RS+ KDGWEN
Sbjct: 388 MGMPESASAANVVAADGWDQGWDDDWDEENAVKSPGGHTYGNISANGLTSRSSKKDGWEN 447

Query: 61  DWD 63
           DWD
Sbjct: 448 DWD 450

The following BLAST results are available for this feature:
BLAST of Lsi03G022840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G022840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061EJ52_THECC9.6e-2277.78Uncharacterized protein OS=Theobroma cacao GN=TCM_019697 PE=4 SV=1[more]
W9SB13_9ROSA9.6e-2277.78Uncharacterized protein OS=Morus notabilis GN=L484_006097 PE=4 SV=1[more]
D7SQY9_VITVI1.6e-2176.19Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g01330 PE=4 SV=... [more]
K4CS24_SOLLC3.6e-2177.78Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
V4UT90_9ROSI1.8e-2076.19Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011425mg PE=4 SV=1[more]
BLAST of Lsi03G022840 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G51580.21.0e-1461.29 unknown protein[more]
BLAST of Lsi03G022840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703149674|ref|XP_010109662.1|1.4e-2177.78hypothetical protein L484_006097 [Morus notabilis][more]
gi|590653813|ref|XP_007033526.1|1.4e-2177.78Uncharacterized protein TCM_019697 [Theobroma cacao][more]
gi|731398656|ref|XP_010653333.1|2.3e-2176.19PREDICTED: uncharacterized protein LOC100253448 [Vitis vinifera][more]
gi|970054210|ref|XP_015088739.1|5.2e-2177.78PREDICTED: uncharacterized protein LOC107031781 [Solanum pennellii][more]
gi|460401559|ref|XP_004246288.1|5.2e-2177.78PREDICTED: uncharacterized protein LOC101261947 [Solanum lycopersicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G022840.1Lsi03G022840.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34200FAMILY NOT NAMEDcoord: 1..63
score: 3.1
NoneNo IPR availablePANTHERPTHR34200:SF1SUBFAMILY NOT NAMEDcoord: 1..63
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G022840Csa3G728040Cucumber (Chinese Long) v2culsiB187
Lsi03G022840CSPI03G30580Wild cucumber (PI 183967)cpilsiB185
Lsi03G022840CmoCh14G000090Cucurbita moschata (Rifu)cmolsiB230
Lsi03G022840Cla018054Watermelon (97103) v1lsiwmB240
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G022840Silver-seed gourdcarlsiB915
Lsi03G022840Cucumber (Chinese Long) v3cuclsiB203
Lsi03G022840Cucumber (Chinese Long) v3cuclsiB298
Lsi03G022840Watermelon (97103) v2lsiwmbB218
Lsi03G022840Watermelon (97103) v2lsiwmbB235
Lsi03G022840Wax gourdlsiwgoB299
Lsi03G022840Wax gourdlsiwgoB331
Lsi03G022840Bottle gourd (USVL1VR-Ls)lsilsiB071
Lsi03G022840Cucumber (Gy14) v1cgylsiB203
Lsi03G022840Cucumber (Gy14) v1cgylsiB296
Lsi03G022840Cucurbita maxima (Rimu)cmalsiB242
Lsi03G022840Cucurbita maxima (Rimu)cmalsiB612
Lsi03G022840Cucurbita maxima (Rimu)cmalsiB754
Lsi03G022840Cucurbita maxima (Rimu)cmalsiB802
Lsi03G022840Cucurbita moschata (Rifu)cmolsiB599
Lsi03G022840Cucurbita moschata (Rifu)cmolsiB747
Lsi03G022840Cucurbita pepo (Zucchini)cpelsiB061
Lsi03G022840Cucurbita pepo (Zucchini)cpelsiB403
Lsi03G022840Cucurbita pepo (Zucchini)cpelsiB503
Lsi03G022840Cucurbita pepo (Zucchini)cpelsiB707
Lsi03G022840Wild cucumber (PI 183967)cpilsiB277
Lsi03G022840Cucumber (Chinese Long) v2culsiB277
Lsi03G022840Melon (DHL92) v3.5.1lsimeB260
Lsi03G022840Watermelon (Charleston Gray)lsiwcgB219
Lsi03G022840Watermelon (Charleston Gray)lsiwcgB241
Lsi03G022840Watermelon (97103) v1lsiwmB267
Lsi03G022840Cucumber (Gy14) v2cgyblsiB171
Lsi03G022840Cucumber (Gy14) v2cgyblsiB258
Lsi03G022840Melon (DHL92) v3.6.1lsimedB273
Lsi03G022840Silver-seed gourdcarlsiB141
Lsi03G022840Silver-seed gourdcarlsiB261