Lsi03G022110 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTAACGGCCTGAACAATCGCTCTGGCTCGCCTCGCCGGGTCGCCGCTCTTGAACACACCGGAGCCGACGAACACGCCGTCGCAACCGAGCTGCATCATCAGTGCTGCATCCGCCGGCGTCGCTACACCACCAGCGGCAAATTGAACCACTGGGAGCCTCCCGAGCTGCTTCGTTTGCAGAACCAAATCGTACGGCGCAGCGATCTTCTTGGCGAAGGTAAAGACCTCATCGTCGTCCATGTTCCTCAACAACCTGATATCTCCCATCACGGACCGCACGTGCCGCACCGCCTCAATGATATTGCCGGTACCAGCCTCGCCCTTGGTTCTGATCATCGCCGCCCCTTCACGAATACGCCGCAGCGCCTCGCCGAGGTTACGGCAGCCGCAGACGAAAGGAATGCGGAAATTGTGTTTGTTGATGTGGTTTTCTTCATCAGCGAGAGTAAGAACTTCGCTCTCATCCACATAATCGATACCAATGGCTTCGAGAATCTGAGCTTCAACGAAATGACCGATTCGAGCCTTCGCCATGACCGGAATCGTAACAGCTTGTTTGATTTCCTTGATGAGTTGAGGGTCACTCATTCTGGCGACGCCGCCTTGGGCTCGGATGTCTGCAGGAACTCTTTCAAGAGCCATGACGGCGCAGGCTCCGGCCTCTTCGGCGACACGAGCCTGCTCGGCGTTGACGACGTCCATAATTACGCCTCCGCGGAGCATTTGAGCCAATCCAACTTTCACAGAGAAGGGGGATTGCTTCGTCTCAGTGAGAGCACCGTTCCCGTACACCGCTACAACACCGGATCCTGCCATTTTCGCCGGAAAATAAAGGGAAGAATATGGCGGCGTATGAGAGAAAAGGGTGAAGATTCAGCCGCAGTGGAAAGGCTGAAGAAGAAGAAGGAAGTGACGAGAAATTGAGGCAGAGAGAGGTGGTTTAAGTAAAGGATGTTCTCGAATGATCTTATCGAGAAGAGAAGCGTAGTCCACACGTCAAGCCTACGCGCGTGGAATAGAAGATAGTGAGGCCCATTGAGTCGTTAATCGTTGAAAAAGGTATTCGAATCCAACGGCTGAAAATAAGAGATCAGGGAGCGTTACAATGGACGTGGTTTCCATGTTTATTAGCTCCAATTGAAGCCACGCATTTTGATGACTGAAGCCCTCGTTTTGCGCACTCTGGAGTTTTGATACGTGGCAACCGCTGGTTCGCTGGGTTCGTTTTCCTTCTTCTTTTATTTATTTATTTTTTTGAAATTACAGAATCACG ATGAGTAACGGCCTGAACAATCGCTCTGGCTCGCCTCGCCGGGTCGCCGCTCTTGAACACACCGGAGCCGACGAACACGCCGTCGCAACCGAGCTGCATCATCAGTGCTGCATCCGCCGGCGTCGCTACACCACCAGCGGCAAATTGAACCACTGGGAGCCTCCCGAGCTGCTTCGTTTGCAGAACCAAATCGTACGGCGCAGCGATCTTCTTGGCGAAGGTAAAGACCTCATCGTCGTCCATGTTCCTCAACAACCTGATATCTCCCATCACGGACCGCACGTGCCGCACCGCCTCAATGATATTGCCGGTACCAGCCTCGCCCTTGGTTCTGATCATCGCCGCCCCTTCACGAATACGCCGCAGCGCCTCGCCGAGGTTACGGCAGCCGCAGACGAAAGGAATGCGGAAATTGTGTTTGTTGATGTGGTTTTCTTCATCAGCGAGAGTAAGAACTTCGCTCTCATCCACATAATCGATACCAATGGCTTCGAGAATCTGAGCTTCAACGAAATGACCGATTCGAGCCTTCGCCATGACCGGAATCGTAACAGCTTGTTTGATTTCCTTGATGAGTTGAGGGTCACTCATTCTGGCGACGCCGCCTTGGGCTCGGATGTCTGCAGGAACTCTTTCAAGAGCCATGACGGCGCAGGCTCCGGCCTCTTCGGCGACACGAGCCTGCTCGGCGTTGACGACGTCCATAATTACGCCTCCGCGGAGCATTTGAGCCAATCCAACTTTCACAGAGAAGGGGGATTGCTTCGTCTCAGTGAGAGCACCGTTCCCGTACACCGCTACAACACCGGATCCTGCCATTTTCGCCGGAAAATAAAGGGAAGAATATGGCGGCGTATGAGAGAAAAGGGTGAAGATTCAGCCGCAGTGGAAAGGCTGAAGAAGAAGAAGGAAGTGACGAGAAATTGAGGCAGAGAGAGGTGGTTTAAGTAAAGGATGTTCTCGAATGATCTTATCGAGAAGAGAAGCGTAGTCCACACGTCAAGCCTACGCGCGTGGAATAGAAGATAGTGAGGCCCATTGAGTCGTTAATCGTTGAAAAAGGTATTCGAATCCAACGGCTGAAAATAAGAGATCAGGGAGCGTTACAATGGACGTGGTTTCCATGTTTATTAGCTCCAATTGAAGCCACGCATTTTGATGACTGAAGCCCTCGTTTTGCGCACTCTGGAGTTTTGATACGTGGCAACCGCTGGTTCGCTGGGTTCGTTTTCCTTCTTCTTTTATTTATTTATTTTTTTGAAATTACAGAATCACG ATGAGTAACGGCCTGAACAATCGCTCTGGCTCGCCTCGCCGGGTCGCCGCTCTTGAACACACCGGAGCCGACGAACACGCCGTCGCAACCGAGCTGCATCATCAGTGCTGCATCCGCCGGCGTCGCTACACCACCAGCGGCAAATTGAACCACTGGGAGCCTCCCGAGCTGCTTCGTTTGCAGAACCAAATCGTACGGCGCAGCGATCTTCTTGGCGAAGGTAAAGACCTCATCGTCGTCCATGTTCCTCAACAACCTGATATCTCCCATCACGGACCGCACGTGCCGCACCGCCTCAATGATATTGCCGGTACCAGCCTCGCCCTTGGTTCTGATCATCGCCGCCCCTTCACGAATACGCCGCAGCGCCTCGCCGAGGTTACGGCAGCCGCAGACGAAAGGAATGCGGAAATTGTGTTTGTTGATGTGGTTTTCTTCATCAGCGAGAGTAAGAACTTCGCTCTCATCCACATAATCGATACCAATGGCTTCGAGAATCTGAGCTTCAACGAAATGACCGATTCGAGCCTTCGCCATGACCGGAATCGTAACAGCTTGTTTGATTTCCTTGATGAGTTGAGGGTCACTCATTCTGGCGACGCCGCCTTGGGCTCGGATGTCTGCAGGAACTCTTTCAAGAGCCATGACGGCGCAGGCTCCGGCCTCTTCGGCGACACGAGCCTGCTCGGCGTTGACGACGTCCATAATTACGCCTCCGCGGAGCATTTGAGCCAATCCAACTTTCACAGAGAAGGGGGATTGCTTCGTCTCAGTGAGAGCACCGTTCCCGTACACCGCTACAACACCGGATCCTGCCATTTTCGCCGGAAAATAAAGGGAAGAATATGGCGGCGTATGAGAGAAAAGGGTGAAGATTCAGCCGCAGTGGAAAGGCTGAAGAAGAAGAAGGAAGTGACGAGAAATTGA MSNGLNNRSGSPRRVAALEHTGADEHAVATELHHQCCIRRRRYTTSGKLNHWEPPELLRLQNQIVRRSDLLGEGKDLIVVHVPQQPDISHHGPHVPHRLNDIAGTSLALGSDHRRPFTNTPQRLAEVTAAADERNAEIVFVDVVFFISESKNFALIHIIDTNGFENLSFNEMTDSSLRHDRNRNSLFDFLDELRVTHSGDAALGSDVCRNSFKSHDGAGSGLFGDTSLLGVDDVHNYASAEHLSQSNFHREGGLLRLSESTVPVHRYNTGSCHFRRKIKGRIWRRMREKGEDSAAVERLKKKKEVTRN
BLAST of Lsi03G022110 vs. TrEMBL
Match: A0A0E9NK00_9ASCO (Uncharacterized protein OS=Saitoella complicata NRRL Y-17804 GN=G7K_4268-t1 PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32 Identity = 84/230 (36.52%), Postives = 128/230 (55.65%), Query Frame = 1
BLAST of Lsi03G022110 vs. TrEMBL
Match: W8ZIE2_9BACL (Uncharacterized protein OS=Paenibacillus sp. P22 GN=BN871_CM_00100 PE=4 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32 Identity = 82/249 (32.93%), Postives = 138/249 (55.42%), Query Frame = 1
BLAST of Lsi03G022110 vs. TrEMBL
Match: A0A0T9BVI9_MYCTX (Uncharacterised protein OS=Mycobacterium tuberculosis GN=ERS027659_00920 PE=4 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 8.8e-28 Identity = 77/233 (33.05%), Postives = 121/233 (51.93%), Query Frame = 1
BLAST of Lsi03G022110 vs. TrEMBL
Match: H0BMQ9_9ACTN (Putative uncharacterized protein OS=Streptomyces sp. W007 GN=SPW_6547 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 3.3e-27 Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = 1
BLAST of Lsi03G022110 vs. TrEMBL
Match: A0A090Y697_PAEMA (Uncharacterized protein OS=Paenibacillus macerans GN=DJ90_6509 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 8.2e-26 Identity = 66/148 (44.59%), Postives = 90/148 (60.81%), Query Frame = 1
BLAST of Lsi03G022110 vs. NCBI nr
Match: gi|972127079|gb|KUI55903.1| (hypothetical protein VP1G_03314 [Valsa mali var. pyri]) HSP 1 Score: 154.5 bits (389), Expect = 3.1e-34 Identity = 93/258 (36.05%), Postives = 148/258 (57.36%), Query Frame = 1
BLAST of Lsi03G022110 vs. NCBI nr
Match: gi|813208866|dbj|GAO50133.1| (hypothetical protein G7K_4268-t1 [Saitoella complicata NRRL Y-17804]) HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32 Identity = 84/230 (36.52%), Postives = 128/230 (55.65%), Query Frame = 1
BLAST of Lsi03G022110 vs. NCBI nr
Match: gi|590111416|emb|CDN43164.1| (hypothetical protein BN871_CM_00100 [Paenibacillus sp. P22]) HSP 1 Score: 147.1 bits (370), Expect = 5.0e-32 Identity = 82/249 (32.93%), Postives = 138/249 (55.42%), Query Frame = 1
BLAST of Lsi03G022110 vs. NCBI nr
Match: gi|895451263|emb|CNZ64250.1| (Uncharacterised protein [Mycobacterium tuberculosis]) HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29 Identity = 81/243 (33.33%), Postives = 128/243 (52.67%), Query Frame = 1
BLAST of Lsi03G022110 vs. NCBI nr
Match: gi|887403170|emb|CKR20752.1| (Uncharacterised protein [Mycobacterium tuberculosis]) HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27 Identity = 77/233 (33.05%), Postives = 121/233 (51.93%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |