Lsi03G021550 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G021550
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAdenine nucleotide alpha hydrolases-like superfamily protein
Locationchr03 : 32696522 .. 32696704 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGGATCGGAAGATCGGAGTTGCTCTGGATTTCTCCAACAGTAGCAAAAATGCTCTCAAATGGGCCATCGACAACTTAGCCGACAAGGGCGACACTCTCTTCATCATCTATGTTAACACCAACTCACTCAACGAATCTGCCCATCACCTCTGGGCTGAATCCGGTTCTCGTCAGTAA

mRNA sequence

ATGGTGAAGGATCGGAAGATCGGAGTTGCTCTGGATTTCTCCAACAGTAGCAAAAATGCTCTCAAATGGGCCATCGACAACTTAGCCGACAAGGGCGACACTCTCTTCATCATCTATGTTAACACCAACTCACTCAACGAATCTGCCCATCACCTCTGGGCTGAATCCGGTTCTCGTCAGTAA

Coding sequence (CDS)

ATGGTGAAGGATCGGAAGATCGGAGTTGCTCTGGATTTCTCCAACAGTAGCAAAAATGCTCTCAAATGGGCCATCGACAACTTAGCCGACAAGGGCGACACTCTCTTCATCATCTATGTTAACACCAACTCACTCAACGAATCTGCCCATCACCTCTGGGCTGAATCCGGTTCTCGTCAGTAA

Protein sequence

MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGSRQ
Homology
[Close]
BLAST of Lsi03G021550 vs. TrEMBL
Match: A0A0A0LDK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G733270 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-22
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVALDFSNSSKNAL+WAIDNLADKGDTLFIIYVN NSL ESAH LWAESGS
Sbjct: 1  MVKDRKIGVALDFSNSSKNALRWAIDNLADKGDTLFIIYVNPNSLEESAHRLWAESGS 58

[Close]
BLAST of Lsi03G021550 vs. TrEMBL
Match: W9RS34_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023651 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-18
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVA+DFS SSKNALKWAIDNLADKGDTL++IYV+ NSL+ES + LWA+SG+
Sbjct: 1  MVKDRKIGVAIDFSESSKNALKWAIDNLADKGDTLYVIYVSPNSLDESRNKLWAKSGA 58

[Close]
BLAST of Lsi03G021550 vs. TrEMBL
Match: I1JLY6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G107900 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-17
Identity = 43/58 (74.14%), Postives = 53/58 (91.38%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          M KDR IGVALDFS SSKNALKWA++NLADKGDT+++I++N+NSL+ES + LWAESGS
Sbjct: 1  MAKDRTIGVALDFSKSSKNALKWALENLADKGDTIYVIHINSNSLDESRNKLWAESGS 58

[Close]
BLAST of Lsi03G021550 vs. TrEMBL
Match: I1JLY5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G107900 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-17
Identity = 43/58 (74.14%), Postives = 53/58 (91.38%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          M KDR IGVALDFS SSKNALKWA++NLADKGDT+++I++N+NSL+ES + LWAESGS
Sbjct: 1  MAKDRTIGVALDFSKSSKNALKWALENLADKGDTIYVIHINSNSLDESRNKLWAESGS 58

[Close]
BLAST of Lsi03G021550 vs. TrEMBL
Match: A0A0B2Q787_GLYSO (Universal stress protein A-like protein OS=Glycine soja GN=glysoja_036951 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-17
Identity = 43/58 (74.14%), Postives = 53/58 (91.38%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          M KDR IGVALDFS SSKNALKWA++NLADKGDT+++I++N+NSL+ES + LWAESGS
Sbjct: 1  MAKDRTIGVALDFSKSSKNALKWALENLADKGDTIYVIHINSNSLDESRNKLWAESGS 58

[Close]
BLAST of Lsi03G021550 vs. TAIR10
Match: AT3G53990.1 (AT3G53990.1 Adenine nucleotide alpha hydrolases-like superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 6.7e-16
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          M KDR IG+A+DFS SSKNALKWAI+NLADKGDT++II+    S +ES + LW +SGS
Sbjct: 1  MPKDRNIGIAMDFSESSKNALKWAIENLADKGDTIYIIHTLPLSGDESRNSLWFKSGS 58

[Close]
BLAST of Lsi03G021550 vs. TAIR10
Match: AT3G03270.1 (AT3G03270.1 Adenine nucleotide alpha hydrolases-like superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 8.7e-08
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          M K R +GV +D+S +SK AL+WA +NL + GDT+ +I+V   + + +   L+ E+GS
Sbjct: 1  MGKARTVGVGMDYSPTSKLALRWAAENLLEDGDTVILIHVQPQNADHTRKILFEETGS 58

[Close]
BLAST of Lsi03G021550 vs. TAIR10
Match: AT3G17020.1 (AT3G17020.1 Adenine nucleotide alpha hydrolases-like superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 4.3e-07
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 1 

Query: 5  RKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYV-NTNSLNESAHHLWAESGS 59
          R+IGVA+DFS+ SK AL WAIDN+   GD L +I + +  +  E    LW   GS
Sbjct: 7  RRIGVAVDFSDCSKKALSWAIDNVVRDGDHLILITIAHDMNYEEGEMQLWETVGS 61

[Close]
BLAST of Lsi03G021550 vs. NCBI nr
Match: gi|659083695|ref|XP_008442491.1| (PREDICTED: uncharacterized protein C167.05 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-22
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVALDFS+SSKNALKWAIDNLADKGDTL+IIYVN NSLNESAH LWAESGS
Sbjct: 1  MVKDRKIGVALDFSDSSKNALKWAIDNLADKGDTLYIIYVNPNSLNESAHRLWAESGS 58

[Close]
BLAST of Lsi03G021550 vs. NCBI nr
Match: gi|778683406|ref|XP_011651876.1| (PREDICTED: uncharacterized protein C167.05 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-22
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVALDFSNSSKNAL+WAIDNLADKGDTLFIIYVN NSL ESAH LWAESGS
Sbjct: 1  MVKDRKIGVALDFSNSSKNALRWAIDNLADKGDTLFIIYVNPNSLEESAHRLWAESGS 58

[Close]
BLAST of Lsi03G021550 vs. NCBI nr
Match: gi|1009157959|ref|XP_015897028.1| (PREDICTED: uncharacterized protein C167.05 [Ziziphus jujuba])

HSP 1 Score: 100.9 bits (250), Expect = 7.9e-19
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTL+II++N+NS  +S + LWA+SGS
Sbjct: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLYIIHINSNSTGQSRNQLWAKSGS 58

[Close]
BLAST of Lsi03G021550 vs. NCBI nr
Match: gi|703119382|ref|XP_010101861.1| (hypothetical protein L484_023651 [Morus notabilis])

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-18
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          MVKDRKIGVA+DFS SSKNALKWAIDNLADKGDTL++IYV+ NSL+ES + LWA+SG+
Sbjct: 1  MVKDRKIGVAIDFSESSKNALKWAIDNLADKGDTLYVIYVSPNSLDESRNKLWAKSGA 58

[Close]
BLAST of Lsi03G021550 vs. NCBI nr
Match: gi|947114126|gb|KRH62428.1| (hypothetical protein GLYMA_04G107900 [Glycine max])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-17
Identity = 43/58 (74.14%), Postives = 53/58 (91.38%), Query Frame = 1 

Query: 1  MVKDRKIGVALDFSNSSKNALKWAIDNLADKGDTLFIIYVNTNSLNESAHHLWAESGS 59
          M KDR IGVALDFS SSKNALKWA++NLADKGDT+++I++N+NSL+ES + LWAESGS
Sbjct: 1  MAKDRTIGVALDFSKSSKNALKWALENLADKGDTIYVIHINSNSLDESRNKLWAESGS 58

The following BLAST results are available for this feature:
BLAST of Lsi03G021550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G021550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDK3_CUCSA3.1e-2293.10Uncharacterized protein OS=Cucumis sativus GN=Csa_3G733270 PE=4 SV=1[more]
W9RS34_9ROSA2.1e-1879.31Uncharacterized protein OS=Morus notabilis GN=L484_023651 PE=4 SV=1[more]
I1JLY6_SOYBN1.8e-1774.14Uncharacterized protein OS=Glycine max GN=GLYMA_04G107900 PE=4 SV=1[more]
I1JLY5_SOYBN1.8e-1774.14Uncharacterized protein OS=Glycine max GN=GLYMA_04G107900 PE=4 SV=1[more]
A0A0B2Q787_GLYSO1.8e-1774.14Universal stress protein A-like protein OS=Glycine soja GN=glysoja_036951 PE=4 S... [more]
BLAST of Lsi03G021550 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G53990.16.7e-1665.52 Adenine nucleotide alpha hydrolases-like superfamily protein[more]
AT3G03270.18.7e-0841.38 Adenine nucleotide alpha hydrolases-like superfamily protein[more]
AT3G17020.14.3e-0747.27 Adenine nucleotide alpha hydrolases-like superfamily protein[more]
BLAST of Lsi03G021550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659083695|ref|XP_008442491.1|3.4e-2293.10PREDICTED: uncharacterized protein C167.05 [Cucumis melo][more]
gi|778683406|ref|XP_011651876.1|4.5e-2293.10PREDICTED: uncharacterized protein C167.05 [Cucumis sativus][more]
gi|1009157959|ref|XP_015897028.1|7.9e-1981.03PREDICTED: uncharacterized protein C167.05 [Ziziphus jujuba][more]
gi|703119382|ref|XP_010101861.1|3.0e-1879.31hypothetical protein L484_023651 [Morus notabilis][more]
gi|947114126|gb|KRH62428.1|2.6e-1774.14hypothetical protein GLYMA_04G107900 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR006016UspA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0008152 metabolic process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G021550.1Lsi03G021550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006016UspAPFAMPF00582Uspcoord: 5..55
score: 1.
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 3..43
score: 2.
NoneNo IPR availablePANTHERPTHR31964FAMILY NOT NAMEDcoord: 1..58
score: 4.0
NoneNo IPR availablePANTHERPTHR31964:SF23SUBFAMILY NOT NAMEDcoord: 1..58
score: 4.0
NoneNo IPR availableunknownSSF52402Adenine nucleotide alpha hydrolases-likecoord: 5..49
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G021550Cla017941Watermelon (97103) v1lsiwmB240
Lsi03G021550MELO3C009215Melon (DHL92) v3.5.1lsimeB260
Lsi03G021550ClCG10G021580Watermelon (Charleston Gray)lsiwcgB219
Lsi03G021550MELO3C009215.2Melon (DHL92) v3.6.1lsimedB273
Lsi03G021550Cla97C10G204840Watermelon (97103) v2lsiwmbB218
Lsi03G021550Bhi11G001614Wax gourdlsiwgoB299
Lsi03G021550Cp4.1LG03g02800Cucurbita pepo (Zucchini)cpelsiB503
Lsi03G021550CsGy3G029670Cucumber (Gy14) v2cgyblsiB171
Lsi03G021550Carg01072Silver-seed gourdcarlsiB141
Lsi03G021550Carg12512Silver-seed gourdcarlsiB915
Lsi03G021550CsaV3_3G034440Cucumber (Chinese Long) v3cuclsiB203
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G021550Silver-seed gourdcarlsiB504
Lsi03G021550Silver-seed gourdcarlsiB529
Lsi03G021550Wax gourdlsiwgoB293
Lsi03G021550Cucumber (Chinese Long) v3cuclsiB298
Lsi03G021550Cucumber (Chinese Long) v3cuclsiB379
Lsi03G021550Cucumber (Chinese Long) v3cuclsiB472
Lsi03G021550Watermelon (97103) v2lsiwmbB225
Lsi03G021550Watermelon (97103) v2lsiwmbB235
Lsi03G021550Watermelon (97103) v2lsiwmbB241
Lsi03G021550Wax gourdlsiwgoB325
Lsi03G021550Wax gourdlsiwgoB331
Lsi03G021550Bottle gourd (USVL1VR-Ls)lsilsiB071
Lsi03G021550Bottle gourd (USVL1VR-Ls)lsilsiB095
Lsi03G021550Bottle gourd (USVL1VR-Ls)lsilsiB125
Lsi03G021550Bottle gourd (USVL1VR-Ls)lsilsiB127
Lsi03G021550Cucumber (Gy14) v1cgylsiB064
Lsi03G021550Cucumber (Gy14) v1cgylsiB215
Lsi03G021550Cucumber (Gy14) v1cgylsiB296
Lsi03G021550Cucurbita maxima (Rimu)cmalsiB242
Lsi03G021550Cucurbita maxima (Rimu)cmalsiB275
Lsi03G021550Cucurbita maxima (Rimu)cmalsiB612
Lsi03G021550Cucurbita maxima (Rimu)cmalsiB661
Lsi03G021550Cucurbita maxima (Rimu)cmalsiB665
Lsi03G021550Cucurbita maxima (Rimu)cmalsiB754
Lsi03G021550Cucurbita maxima (Rimu)cmalsiB799
Lsi03G021550Cucurbita moschata (Rifu)cmolsiB230
Lsi03G021550Cucurbita moschata (Rifu)cmolsiB264
Lsi03G021550Cucurbita moschata (Rifu)cmolsiB599
Lsi03G021550Cucurbita moschata (Rifu)cmolsiB652
Lsi03G021550Cucurbita moschata (Rifu)cmolsiB747
Lsi03G021550Cucurbita moschata (Rifu)cmolsiB787
Lsi03G021550Cucurbita pepo (Zucchini)cpelsiB061
Lsi03G021550Cucurbita pepo (Zucchini)cpelsiB347
Lsi03G021550Cucurbita pepo (Zucchini)cpelsiB349
Lsi03G021550Cucurbita pepo (Zucchini)cpelsiB404
Lsi03G021550Cucurbita pepo (Zucchini)cpelsiB707
Lsi03G021550Wild cucumber (PI 183967)cpilsiB185
Lsi03G021550Wild cucumber (PI 183967)cpilsiB277
Lsi03G021550Wild cucumber (PI 183967)cpilsiB449
Lsi03G021550Cucumber (Chinese Long) v2culsiB187
Lsi03G021550Cucumber (Chinese Long) v2culsiB277
Lsi03G021550Cucumber (Chinese Long) v2culsiB442
Lsi03G021550Melon (DHL92) v3.5.1lsimeB257
Lsi03G021550Melon (DHL92) v3.5.1lsimeB275
Lsi03G021550Watermelon (Charleston Gray)lsiwcgB228
Lsi03G021550Watermelon (Charleston Gray)lsiwcgB241
Lsi03G021550Watermelon (Charleston Gray)lsiwcgB248
Lsi03G021550Watermelon (97103) v1lsiwmB267
Lsi03G021550Watermelon (97103) v1lsiwmB276
Lsi03G021550Cucumber (Gy14) v2cgyblsiB042
Lsi03G021550Cucumber (Gy14) v2cgyblsiB258
Lsi03G021550Cucumber (Gy14) v2cgyblsiB326
Lsi03G021550Cucumber (Gy14) v2cgyblsiB408
Lsi03G021550Melon (DHL92) v3.6.1lsimedB258
Lsi03G021550Melon (DHL92) v3.6.1lsimedB270
Lsi03G021550Melon (DHL92) v3.6.1lsimedB288
Lsi03G021550Silver-seed gourdcarlsiB020