Lsi03G018320 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G018320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative
Location	chr03 : 29805068 .. 29805736 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACAAACAACCCCACCTCAACGGCGCCTTCTACGGCCCTGCCGTCCCTCCTCCGACAAAGACTTACCACCGCCATGGCCACGGCCGCGGCTGCGCTTGCTGCCTCCTCACCACCTTTCTCAAGCTCCTCATCACCATAGTCGTCGTGGTTGGTCTAGCAGTATTGATATTATGGCTCGTATTCCGTCCCAATAAGCTCAAGTTCGACGTCACCGGCGCCGAACTCACCCAATTGAACGTCACCGGCAACCAACTCCATTACAATCTCGCTTTAAACCTCACTGTCCGAAACCCCAACAAGCGAATCGGAGTTTACTACGACGTCATCGAAGCTTCCTCCTTTTACAAAGACCAGAGGCTAAATACCCAGTGGCTACCGCCGTTCTACCAAGGCCACAAAACCACCACCGTCCTCAGCCCCCACTTCGACGGCCAGGCGTTGGTGCTTCTCACCGGCGATAAGCTTGCAGAGTTCAACGCCGAGACACTTGCCGGCGCCTTCGACATCGACTTGAAGATCCGTCTCCGGCTGAGGTTGAAGGTCGGCGCCGTGAGGATCGGGAAGTTCAAGCCAAAGGTTAACTGCGAAATGAAGGTTCCATTGAAATCGAATGCAAACTCCTTTACTTTCTTTCAGACCACTGGCTGCGACTTCGATTTTTGA

mRNA sequence

ATGGCCGACAAACAACCCCACCTCAACGGCGCCTTCTACGGCCCTGCCGTCCCTCCTCCGACAAAGACTTACCACCGCCATGGCCACGGCCGCGGCTGCGCTTGCTGCCTCCTCACCACCTTTCTCAAGCTCCTCATCACCATAGTCGTCGTGGTTGGTCTAGCAGTATTGATATTATGGCTCGTATTCCGTCCCAATAAGCTCAAGTTCGACGTCACCGGCGCCGAACTCACCCAATTGAACGTCACCGGCAACCAACTCCATTACAATCTCGCTTTAAACCTCACTGTCCGAAACCCCAACAAGCGAATCGGAGTTTACTACGACGTCATCGAAGCTTCCTCCTTTTACAAAGACCAGAGGCTAAATACCCAGTGGCTACCGCCGTTCTACCAAGGCCACAAAACCACCACCGTCCTCAGCCCCCACTTCGACGGCCAGGCGTTGGTGCTTCTCACCGGCGATAAGCTTGCAGAGTTCAACGCCGAGACACTTGCCGGCGCCTTCGACATCGACTTGAAGATCCGTCTCCGGCTGAGGTTGAAGGTCGGCGCCGTGAGGATCGGGAAGTTCAAGCCAAAGGTTAACTGCGAAATGAAGGTTCCATTGAAATCGAATGCAAACTCCTTTACTTTCTTTCAGACCACTGGCTGCGACTTCGATTTTTGA

Coding sequence (CDS)

ATGGCCGACAAACAACCCCACCTCAACGGCGCCTTCTACGGCCCTGCCGTCCCTCCTCCGACAAAGACTTACCACCGCCATGGCCACGGCCGCGGCTGCGCTTGCTGCCTCCTCACCACCTTTCTCAAGCTCCTCATCACCATAGTCGTCGTGGTTGGTCTAGCAGTATTGATATTATGGCTCGTATTCCGTCCCAATAAGCTCAAGTTCGACGTCACCGGCGCCGAACTCACCCAATTGAACGTCACCGGCAACCAACTCCATTACAATCTCGCTTTAAACCTCACTGTCCGAAACCCCAACAAGCGAATCGGAGTTTACTACGACGTCATCGAAGCTTCCTCCTTTTACAAAGACCAGAGGCTAAATACCCAGTGGCTACCGCCGTTCTACCAAGGCCACAAAACCACCACCGTCCTCAGCCCCCACTTCGACGGCCAGGCGTTGGTGCTTCTCACCGGCGATAAGCTTGCAGAGTTCAACGCCGAGACACTTGCCGGCGCCTTCGACATCGACTTGAAGATCCGTCTCCGGCTGAGGTTGAAGGTCGGCGCCGTGAGGATCGGGAAGTTCAAGCCAAAGGTTAACTGCGAAATGAAGGTTCCATTGAAATCGAATGCAAACTCCTTTACTTTCTTTCAGACCACTGGCTGCGACTTCGATTTTTGA

Protein sequence

MADKQPHLNGAFYGPAVPPPTKTYHRHGHGRGCACCLLTTFLKLLITIVVVVGLAVLILWLVFRPNKLKFDVTGAELTQLNVTGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQRLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRLRLKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGCDFDF

Homology

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BLAST of Lsi03G018320 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-60
Identity = 120/229 (52.40%), Postives = 164/229 (71.62%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPT-KTYHRHGHGRGCACCLLTTFLKLLITIVVVVGLAVLIL 60
           MA +QP LNGAFYGP+VPPP  K Y+R GHGRGC CCLL+ F+K++I+++V++G+A LI 
Sbjct: 1   MAAEQP-LNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIF 60

Query: 61  WLVFRPNKLKFDVTGAELTQLNVTG--NQLHYNLALNLTVRNPNKRIGVYYDVIEASSFY 120
           WL+ RP  +KF VT A LT+ + T   N L YNLAL + VRNPNKRIG+YYD IEA ++Y
Sbjct: 61  WLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY 120

Query: 121 KDQRLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRL 180
           + +R +T  L PFYQGHK TTVL+P F GQ LV+    +    NAE ++G ++I++K RL
Sbjct: 121 EGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRL 180

Query: 181 RLRLKVGAVRIGKFKPKVNC-EMKVPLKSNANSFTFFQTT---GCDFDF 223
           R+R K+G ++  + KPKV+C ++++PL S +N  T   T     CDFDF
Sbjct: 181 RVRFKLGDLKFRRIKPKVDCDDLRLPL-STSNGTTTTSTVFPIKCDFDF 227

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BLAST of Lsi03G018320 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-56
Identity = 110/228 (48.25%), Postives = 146/228 (64.04%), Query Frame = 1


Query: 8   LNGAFYGPAVPPPTKTYHRHGHGRG-----------CACCLLTTFLKLLITIVVVVGLAV 67
           LNGA+YGP++PPP K  H HG   G           C CC+L+    +LITI V++G+A 
Sbjct: 4   LNGAYYGPSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAA 63

Query: 68  LILWLVFRPNKLKFDVTGAELTQLNVTG-NQLHYNLALNLTVRNPNKRIGVYYDVIEASS 127
           LI+WL+FRPN +KF VT A+LT+  +   N L YNL LN T+RNPN+RIGVYYD IE   
Sbjct: 64  LIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRG 123

Query: 128 FYKDQRLN-TQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLK 187
           +Y DQR   +  +  FYQGHK TTV+     GQ LVLL G +  + N +  +  + ID K
Sbjct: 124 YYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAK 183

Query: 188 IRLRLRLKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGCDFDF 223
           +RL++R K G ++  +FKPK+ C++KVPL SN+ S   FQ T CD DF
Sbjct: 184 LRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQPTKCDVDF 231

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BLAST of Lsi03G018320 vs. Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1


Query: 64  RPNKLKFDVTGAELTQLNV-TGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQRL 123
           R N +KF V  AELT  ++ + N L Y+L+LNL++RN    IG++YD  EA+ +Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 124 NTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRLRLK 183
               +P FY G K T +L   F+GQ LVLL G++  +F  +   G + ID+K+ +  R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 184 VGAVRIGKFKPKVNCEMKVPLKSNANSFT 212
           V  +     KP V C +K+PL   +++ T
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSNST 151

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BLAST of Lsi03G018320 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-15
Identity = 56/194 (28.87%), Postives = 96/194 (49.48%), Query Frame = 1


Query: 21  TKTYHRHGHGRGCACCLLTTFLKLLITIVVVVGLAVLILWLVFRPNKLKFDVTGAELTQL 80
           TK    HG G G      +    ++I  +++V + + ++W++ +P K +F +  A +   
Sbjct: 3   TKDCGNHGGGGGGGTA--SRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAF 62

Query: 81  NVTG-NQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQRLNTQW-LPPFYQGHKTTT 140
           N++  N L  N  + +  RN N RIG+YYD +   + Y++Q++  +  +PP YQGHK   
Sbjct: 63  NLSQPNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDN 122

Query: 141 VLSPHFDGQALVLLTGDKLAEFNAETLA-----GAFDIDLKIRLRLRLKVGAVRIGKFKP 200
           V SP   G ++       +A FNA  L      G   + ++   R+R KVG +  GK+  
Sbjct: 123 VWSPFVYGNSV------PIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHL 182

Query: 201 KVNCEMKVPLKSNA 208
            V C+  + L   A
Sbjct: 183 HVRCQAFINLADKA 188

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BLAST of Lsi03G018320 vs. Swiss-Prot
Match: Y1816_ARATH (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-07
Identity = 44/176 (25.00%), Postives = 78/176 (44.32%), Query Frame = 1


Query: 45  LITIVVVVGLAVLILWLVFRPNKLKFDVTGAELTQLNVTGNQLHYNLALNLTVR--NPNK 104
           L+ + ++VGLA+LI +L  RP +L + V  A + +  +  N  H N   +  ++  NP K
Sbjct: 44  LVLLGLLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEK 103

Query: 105 RIGVYYDVIEASSFYKDQRLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNA 164
            + V Y  +  S+ + +Q +  + + PF Q  K  T +         V L+     +  A
Sbjct: 104 HVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHN-VALSKFNARDLRA 163

Query: 165 ETLAGAFDIDLKIRLRLRLKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGC 219
           E   G  ++++ I  R+  K    R  +   K  C   V +   ++S   FQ   C
Sbjct: 164 EKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVC-TPVMINVTSSSLDGFQRVLC 217

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BLAST of Lsi03G018320 vs. TrEMBL
Match: A0A0A0LBJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779020 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 2.1e-108
Identity = 188/222 (84.68%), Postives = 202/222 (90.99%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPTKTYHRHGHGRGCACCLLTTFLKLLITIVVVVGLAVLILW 60
           MADKQPHLNGAFYGPAVPPP KTYH H H RGCACCLLTTFLKLL+TIVVVVG+AVLILW
Sbjct: 1   MADKQPHLNGAFYGPAVPPPPKTYHHHAHRRGCACCLLTTFLKLLVTIVVVVGIAVLILW 60

Query: 61  LVFRPNKLKFDVTGAELTQLNVTGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQ 120
            +FRP+KL FDVT AELT+ N++GNQLHYNLALNLT+RNPNKRIGVYYDVIEAS FYKDQ
Sbjct: 61  FLFRPHKLTFDVTDAELTRFNISGNQLHYNLALNLTIRNPNKRIGVYYDVIEASPFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRLR 180
           RLNTQWLPPFYQGHKTTTVLSPHFDGQ +V L GDKL EFN ETLAG F++DL+ RL+LR
Sbjct: 121 RLNTQWLPPFYQGHKTTTVLSPHFDGQQIVFLAGDKLTEFNGETLAGIFNVDLRFRLQLR 180

Query: 181 LKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGCDFDF 223
           LKVG VRIGKFKPKVNCE+KVPLKSNANSFTF Q T CDFDF
Sbjct: 181 LKVGVVRIGKFKPKVNCELKVPLKSNANSFTFLQATRCDFDF 222

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BLAST of Lsi03G018320 vs. TrEMBL
Match: A0A0A0LGS5_CUCSA (Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 4.8e-108
Identity = 189/222 (85.14%), Postives = 205/222 (92.34%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPTKTYHRHGHGRGCACCLLTTFLKLLITIVVVVGLAVLILW 60
           MADKQPHLNGAFYGPAVPPP KTYHRHGHGRGCACCLLTTFLK LI IVVV+G+AVL+ W
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60

Query: 61  LVFRPNKLKFDVTGAELTQLNVTGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQ 120
           LVFRPNKLKFDVTGA+LT+ NV+GNQLHY+LALNLTVRNPNKRIGVYYDVIEAS +YKDQ
Sbjct: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRLR 180
           RLNTQWL PFYQGHKTT+VLSP FDGQ +V+  GDKL EFN ETLAG F++D+KIRLRLR
Sbjct: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180

Query: 181 LKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGCDFDF 223
           LKVGAVRIGKF+PKVNCE+KVPLKSN NSFT FQTT CDFDF
Sbjct: 181 LKVGAVRIGKFRPKVNCELKVPLKSNPNSFT-FQTTRCDFDF 221

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BLAST of Lsi03G018320 vs. TrEMBL
Match: A0A0D2MF43_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G235900 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.2e-72
Identity = 129/226 (57.08%), Postives = 172/226 (76.11%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPTKTYHRHGHGRGCAC--CLLTTFLKLLITIVVVVGLAVLI 60
           M+DKQ HLNGA+YGP++PPPT+TYHR G G GC C  CLL     ++IT +V++GLAV I
Sbjct: 1   MSDKQAHLNGAYYGPSIPPPTRTYHRPGRGSGCGCGCCLLKCLFNIIITAIVIIGLAVFI 60

Query: 61  LWLVFRPNKLKFDVTGAELTQLNVTGNQ-LHYNLALNLTVRNPNKRIGVYYDVIEASSFY 120
            WL+FRPNK+KF VT  +LTQ N+T N  LHYNLALN+T+RNPN+RIG+YYD IEA ++Y
Sbjct: 61  FWLIFRPNKVKFHVTDVQLTQFNLTSNNTLHYNLALNMTIRNPNRRIGIYYDRIEARAYY 120

Query: 121 KDQRLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRL 180
           +DQR +T+ L PFYQGHK T+ L+P F GQ  V L  D+ +EFN + + G +DID+K+ L
Sbjct: 121 EDQRFDTETLTPFYQGHKNTSYLNPVFVGQQFVRLGADETSEFNEDRVNGVYDIDVKLYL 180

Query: 181 RLRLKVGAVRIGKFKPKVNCEMKVPLKSNANSF-TFFQTTGCDFDF 223
           R+R K+G V+ G+FKP+++C++KVPL +   SF   F+TT CD DF
Sbjct: 181 RIRFKLGRVKTGRFKPRISCDLKVPLNTGNGSFGGTFKTTRCDLDF 226

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BLAST of Lsi03G018320 vs. TrEMBL
Match: B9T2S1_RICCO (Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.1e-71
Identity = 132/223 (59.19%), Postives = 173/223 (77.58%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPTKTYHRHGH-GRGCACCLLTTFLKLLITIVVVVGLAVLIL 60
           MA+KQ  LNGA+YGPA+PPP ++YHR G  G GC CCLL+  LK++ITI VV+GLAVLI 
Sbjct: 1   MAEKQAQLNGAYYGPAIPPP-QSYHRPGRSGCGCGCCLLSCLLKIIITIAVVLGLAVLIF 60

Query: 61  WLVFRPNKLKFDVTGAELTQLNVTGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKD 120
           WLV RPNK+KF VT A L++ N+  N LHYNLALN+TVRNPNK+IG+YYD IEA   Y+D
Sbjct: 61  WLVVRPNKVKFHVTEANLSEFNINNNTLHYNLALNITVRNPNKKIGIYYDRIEARGKYED 120

Query: 121 QRLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRL 180
           QR  +Q+L PFYQGHK T++L+P F GQ L+LL+GD+L +FN E ++G + ID+ + L++
Sbjct: 121 QRFGSQFLTPFYQGHKNTSILTPAFQGQQLMLLSGDELTDFNEERVSGVYSIDVTLYLKI 180

Query: 181 RLKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGCDFDF 223
           R K+G ++IGKFKPK+ CE+KVP  S+A     FQ T CD+D+
Sbjct: 181 RFKIGDLKIGKFKPKIQCELKVPSNSSA---VPFQRTECDWDY 219

[Close]

BLAST of Lsi03G018320 vs. TrEMBL
Match: A0A0A0LE50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778990 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 7.9e-71
Identity = 138/207 (66.67%), Postives = 165/207 (79.71%), Query Frame = 1


Query: 23  TYHR----HGHGR-GCACCLLTTFLKLLITIVVVVGLAVLILWLVFRPNKLKFDVTGAEL 82
           TYHR    H H R  C      TFLK+LI I++VVGLAVLILWL+FRPNK+KF+VT A+L
Sbjct: 6   TYHRPEHHHNHCRCSCGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTDAKL 65

Query: 83  TQLNVTGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQRLNTQWLPPFYQGHKTT 142
           TQ N+ GNQLHYNLALN+TVRNPNKRIGVYYD IE+S  YKDQRL TQWLPPFYQG+KTT
Sbjct: 66  TQFNLIGNQLHYNLALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGYKTT 125

Query: 143 TVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRLRLKVGAVRIGKFKPKVNC 202
            V+S  F GQ L+LL G  L EFNAET+AG +++++++ LR+RLK GAVRIGKFKPKVNC
Sbjct: 126 AVISCVFSGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC 185

Query: 203 EMKVPLKSNANSF--TFFQTTGCDFDF 223
           E KVPL S+ NS   + F++TGCD D+
Sbjct: 186 EFKVPLSSDGNSVVGSVFESTGCDIDY 212

[Close]

BLAST of Lsi03G018320 vs. TAIR10
Match: AT2G35980.1 (AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 234.6 bits (597), Expect = 6.0e-62
Identity = 120/229 (52.40%), Postives = 164/229 (71.62%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPT-KTYHRHGHGRGCACCLLTTFLKLLITIVVVVGLAVLIL 60
           MA +QP LNGAFYGP+VPPP  K Y+R GHGRGC CCLL+ F+K++I+++V++G+A LI 
Sbjct: 1   MAAEQP-LNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIF 60

Query: 61  WLVFRPNKLKFDVTGAELTQLNVTG--NQLHYNLALNLTVRNPNKRIGVYYDVIEASSFY 120
           WL+ RP  +KF VT A LT+ + T   N L YNLAL + VRNPNKRIG+YYD IEA ++Y
Sbjct: 61  WLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY 120

Query: 121 KDQRLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRL 180
           + +R +T  L PFYQGHK TTVL+P F GQ LV+    +    NAE ++G ++I++K RL
Sbjct: 121 EGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRL 180

Query: 181 RLRLKVGAVRIGKFKPKVNC-EMKVPLKSNANSFTFFQTT---GCDFDF 223
           R+R K+G ++  + KPKV+C ++++PL S +N  T   T     CDFDF
Sbjct: 181 RVRFKLGDLKFRRIKPKVDCDDLRLPL-STSNGTTTTSTVFPIKCDFDF 227

[Close]

BLAST of Lsi03G018320 vs. TAIR10
Match: AT5G06320.1 (AT5G06320.1 NDR1/HIN1-like 3)

HSP 1 Score: 220.7 bits (561), Expect = 9.0e-58
Identity = 110/228 (48.25%), Postives = 146/228 (64.04%), Query Frame = 1


Query: 8   LNGAFYGPAVPPPTKTYHRHGHGRG-----------CACCLLTTFLKLLITIVVVVGLAV 67
           LNGA+YGP++PPP K  H HG   G           C CC+L+    +LITI V++G+A 
Sbjct: 4   LNGAYYGPSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAA 63

Query: 68  LILWLVFRPNKLKFDVTGAELTQLNVTG-NQLHYNLALNLTVRNPNKRIGVYYDVIEASS 127
           LI+WL+FRPN +KF VT A+LT+  +   N L YNL LN T+RNPN+RIGVYYD IE   
Sbjct: 64  LIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRG 123

Query: 128 FYKDQRLN-TQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLK 187
           +Y DQR   +  +  FYQGHK TTV+     GQ LVLL G +  + N +  +  + ID K
Sbjct: 124 YYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAK 183

Query: 188 IRLRLRLKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGCDFDF 223
           +RL++R K G ++  +FKPK+ C++KVPL SN+ S   FQ T CD DF
Sbjct: 184 LRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQPTKCDVDF 231

[Close]

BLAST of Lsi03G018320 vs. TAIR10
Match: AT3G11650.1 (AT3G11650.1 NDR1/HIN1-like 2)

HSP 1 Score: 195.7 bits (496), Expect = 3.1e-50
Identity = 102/238 (42.86%), Postives = 145/238 (60.92%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPTK---TYHRHGHG-----------RGCACCLLTTFLKLLI 60
           M  KQP+LNGA+YGP++PPP K   +Y+  G G           R C CC+L+    +LI
Sbjct: 1   MGSKQPYLNGAYYGPSIPPPPKAHRSYNSPGFGCCCFSCLGSCLRCCGCCILSLICNILI 60

Query: 61  TIVVVVGLAVLILWLVFRPNKLKFDVTGAELTQLNVT-GNQLHYNLALNLTVRNPNKRIG 120
            + V++G+A LILWL+FRPN +KF V  A L + +    N LHY+L LN T+RNPN+R+G
Sbjct: 61  AVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVG 120

Query: 121 VYYDVIEASSFYKDQRLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETL 180
           VYYD    S +Y DQR  +  +  FYQGHK TTV+    +GQ LV+L      +   +  
Sbjct: 121 VYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEK 180

Query: 181 AGAFDIDLKIRLRLRLKVGAVRIGKFKPKVNC-EMKVPLKSNANSFTF-FQTTGCDFD 222
           +G + I+ K+RL +R K   ++  K KPK+ C ++K+PL S+ ++  F FQ   CDFD
Sbjct: 181 SGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGGFKFQPVQCDFD 238

[Close]

BLAST of Lsi03G018320 vs. TAIR10
Match: AT2G35460.1 (AT2G35460.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 181.8 bits (460), Expect = 4.6e-46
Identity = 94/233 (40.34%), Postives = 137/233 (58.80%), Query Frame = 1


Query: 8   LNGAFYGPAVPPPTKTYHRHGH-----GRG-CAC----------CLLTTFLKLLITIVVV 67
           LNGA YGP + PP KTY+ HG      G G C C          CL+     +LI ++V 
Sbjct: 5   LNGASYGPPIKPPVKTYYSHGRRGSDVGCGICGCFSSCLLCCGGCLVNIICNILIGVLVC 64

Query: 68  VGLAVLILWLVFRPNKLKFDVTGAELT--QLNVTGNQLHYNLALNLTVRNPNKRIGVYYD 127
           +G+  LILW + RPN +KF VT A+LT  + +   + LHYN++LN ++RNPN+R+G++YD
Sbjct: 65  LGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSIRNPNQRLGIHYD 124

Query: 128 VIEASSFYKDQRLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAF 187
            +E   +Y DQR +   +  FYQGHK TTV+    +GQ LVLL      +F  +  +G +
Sbjct: 125 QLEVRGYYGDQRFSAANMTSFYQGHKNTTVVGTELNGQKLVLLGAGGRRDFREDRRSGVY 184

Query: 188 DIDLKIRLRLRLKVGAVRIGKFKPKVNCEMKVPLKSNANSFTF-FQTTGCDFD 222
            ID+K+R +LR K G +     +PK+ C +KVPL ++++   F F  T C  D
Sbjct: 185 RIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLSTSSSDERFQFHPTKCHVD 237

[Close]

BLAST of Lsi03G018320 vs. TAIR10
Match: AT1G32270.1 (AT1G32270.1 syntaxin, putative)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-25
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 1


Query: 64  RPNKLKFDVTGAELTQLNV-TGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQRL 123
           R N +KF V  AELT  ++ + N L Y+L+LNL++RN    IG++YD  EA+ +Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 124 NTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRLRLK 183
               +P FY G K T +L   F+GQ LVLL G++  +F  +   G + ID+K+ +  R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 184 VGAVRIGKFKPKVNCEMKVPLKSNANSFT 212
           V  +     KP V C +K+PL   +++ T
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSNST 151

[Close]

BLAST of Lsi03G018320 vs. NCBI nr
Match: gi|659084478|ref|XP_008442908.1| (PREDICTED: protein YLS9 [Cucumis melo])

HSP 1 Score: 404.1 bits (1037), Expect = 1.6e-109
Identity = 191/222 (86.04%), Postives = 202/222 (90.99%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPTKTYHRHGHGRGCACCLLTTFLKLLITIVVVVGLAVLILW 60
           MADKQPHLNGAFYGPAVPPP KTYHRHGHGRGCACCLLTTFLK  I IVVV+G+ VL+LW
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFFIAIVVVLGVTVLVLW 60

Query: 61  LVFRPNKLKFDVTGAELTQLNVTGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQ 120
           LVFRPNKLKF VTGAELT+ NV+GNQLHYNLALNLTVRNPNKRIGVYYDVIEAS +YKDQ
Sbjct: 61  LVFRPNKLKFHVTGAELTRFNVSGNQLHYNLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRLR 180
           RLNTQWL PFYQGHKTTTVLSPHFDGQ +V   GDKL EFN ETLAG F++D+K RLRLR
Sbjct: 121 RLNTQWLTPFYQGHKTTTVLSPHFDGQQIVFFAGDKLTEFNGETLAGIFEVDVKFRLRLR 180

Query: 181 LKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGCDFDF 223
           LKVGAVRIGKFKPKVNCE+KVPLKSN NSFT FQTT CDFDF
Sbjct: 181 LKVGAVRIGKFKPKVNCELKVPLKSNPNSFTSFQTTRCDFDF 222

[Close]

BLAST of Lsi03G018320 vs. NCBI nr
Match: gi|778684454|ref|XP_011652031.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 399.8 bits (1026), Expect = 3.1e-108
Identity = 188/222 (84.68%), Postives = 202/222 (90.99%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPTKTYHRHGHGRGCACCLLTTFLKLLITIVVVVGLAVLILW 60
           MADKQPHLNGAFYGPAVPPP KTYH H H RGCACCLLTTFLKLL+TIVVVVG+AVLILW
Sbjct: 1   MADKQPHLNGAFYGPAVPPPPKTYHHHAHRRGCACCLLTTFLKLLVTIVVVVGIAVLILW 60

Query: 61  LVFRPNKLKFDVTGAELTQLNVTGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQ 120
            +FRP+KL FDVT AELT+ N++GNQLHYNLALNLT+RNPNKRIGVYYDVIEAS FYKDQ
Sbjct: 61  FLFRPHKLTFDVTDAELTRFNISGNQLHYNLALNLTIRNPNKRIGVYYDVIEASPFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRLR 180
           RLNTQWLPPFYQGHKTTTVLSPHFDGQ +V L GDKL EFN ETLAG F++DL+ RL+LR
Sbjct: 121 RLNTQWLPPFYQGHKTTTVLSPHFDGQQIVFLAGDKLTEFNGETLAGIFNVDLRFRLQLR 180

Query: 181 LKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGCDFDF 223
           LKVG VRIGKFKPKVNCE+KVPLKSNANSFTF Q T CDFDF
Sbjct: 181 LKVGVVRIGKFKPKVNCELKVPLKSNANSFTFLQATRCDFDF 222

[Close]

BLAST of Lsi03G018320 vs. NCBI nr
Match: gi|449437456|ref|XP_004136508.1| (PREDICTED: protein YLS9 [Cucumis sativus])

HSP 1 Score: 398.7 bits (1023), Expect = 6.8e-108
Identity = 189/222 (85.14%), Postives = 205/222 (92.34%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPTKTYHRHGHGRGCACCLLTTFLKLLITIVVVVGLAVLILW 60
           MADKQPHLNGAFYGPAVPPP KTYHRHGHGRGCACCLLTTFLK LI IVVV+G+AVL+ W
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60

Query: 61  LVFRPNKLKFDVTGAELTQLNVTGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQ 120
           LVFRPNKLKFDVTGA+LT+ NV+GNQLHY+LALNLTVRNPNKRIGVYYDVIEAS +YKDQ
Sbjct: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRLR 180
           RLNTQWL PFYQGHKTT+VLSP FDGQ +V+  GDKL EFN ETLAG F++D+KIRLRLR
Sbjct: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180

Query: 181 LKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGCDFDF 223
           LKVGAVRIGKF+PKVNCE+KVPLKSN NSFT FQTT CDFDF
Sbjct: 181 LKVGAVRIGKFRPKVNCELKVPLKSNPNSFT-FQTTRCDFDF 221

[Close]

BLAST of Lsi03G018320 vs. NCBI nr
Match: gi|659084480|ref|XP_008442909.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 398.7 bits (1023), Expect = 6.8e-108
Identity = 189/222 (85.14%), Postives = 202/222 (90.99%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPTKTYHRHGHGRGCACCLLTTFLKLLITIVVVVGLAVLILW 60
           MADKQPHLNGAFYGPAVPPP KTYHRHGH RGCACCLLTTFLKLLITIVVVVG+AVL+LW
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHRRGCACCLLTTFLKLLITIVVVVGIAVLVLW 60

Query: 61  LVFRPNKLKFDVTGAELTQLNVTGNQLHYNLALNLTVRNPNKRIGVYYDVIEASSFYKDQ 120
           LVFRP+KL F VT AELT+ N++GNQLHYN+ALNLTVRNPN RIGVYYDVIEAS FYKDQ
Sbjct: 61  LVFRPHKLTFHVTDAELTRFNISGNQLHYNMALNLTVRNPNNRIGVYYDVIEASPFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRLRLR 180
           RLNTQWLPPFYQ HKTTTVL PHF+GQ +V L GDKL EFN ETLAG F++DL  RL+LR
Sbjct: 121 RLNTQWLPPFYQDHKTTTVLRPHFNGQQIVFLAGDKLTEFNGETLAGVFNVDLTFRLQLR 180

Query: 181 LKVGAVRIGKFKPKVNCEMKVPLKSNANSFTFFQTTGCDFDF 223
           LKVGAVRIGKFKPKVNCE+KVPLKSN NSFTFFQTT CDFDF
Sbjct: 181 LKVGAVRIGKFKPKVNCELKVPLKSNPNSFTFFQTTRCDFDF 222

[Close]

BLAST of Lsi03G018320 vs. NCBI nr
Match: gi|823136724|ref|XP_012468130.1| (PREDICTED: protein YLS9-like [Gossypium raimondii])

HSP 1 Score: 279.6 bits (714), Expect = 4.6e-72
Identity = 129/226 (57.08%), Postives = 172/226 (76.11%), Query Frame = 1


Query: 1   MADKQPHLNGAFYGPAVPPPTKTYHRHGHGRGCAC--CLLTTFLKLLITIVVVVGLAVLI 60
           M+DKQ HLNGA+YGP++PPPT+TYHR G G GC C  CLL     ++IT +V++GLAV I
Sbjct: 1   MSDKQAHLNGAYYGPSIPPPTRTYHRPGRGSGCGCGCCLLKCLFNIIITAIVIIGLAVFI 60

Query: 61  LWLVFRPNKLKFDVTGAELTQLNVTGNQ-LHYNLALNLTVRNPNKRIGVYYDVIEASSFY 120
            WL+FRPNK+KF VT  +LTQ N+T N  LHYNLALN+T+RNPN+RIG+YYD IEA ++Y
Sbjct: 61  FWLIFRPNKVKFHVTDVQLTQFNLTSNNTLHYNLALNMTIRNPNRRIGIYYDRIEARAYY 120

Query: 121 KDQRLNTQWLPPFYQGHKTTTVLSPHFDGQALVLLTGDKLAEFNAETLAGAFDIDLKIRL 180
           +DQR +T+ L PFYQGHK T+ L+P F GQ  V L  D+ +EFN + + G +DID+K+ L
Sbjct: 121 EDQRFDTETLTPFYQGHKNTSYLNPVFVGQQFVRLGADETSEFNEDRVNGVYDIDVKLYL 180

Query: 181 RLRLKVGAVRIGKFKPKVNCEMKVPLKSNANSF-TFFQTTGCDFDF 223
           R+R K+G V+ G+FKP+++C++KVPL +   SF   F+TT CD DF
Sbjct: 181 RIRFKLGRVKTGRFKPRISCDLKVPLNTGNGSFGGTFKTTRCDLDF 226

The following BLAST results are available for this feature:

BLAST of Lsi03G018320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS9_ARATH	1.1e-60	52.40	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
NHL3_ARATH	1.6e-56	48.25	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]
SYP24_ARATH	2.1e-24	38.93	Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1	[more]
NHL12_ARATH	2.3e-15	28.87	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]
Y1816_ARATH	4.0e-07	25.00	Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1	[more]

BLAST of Lsi03G018320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBJ4_CUCSA	2.1e-108	84.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G779020 PE=4 SV=1	[more]
A0A0A0LGS5_CUCSA	4.8e-108	85.14	Hairpin-inducing protein OS=Cucumis sativus GN=Csa_3G779010 PE=4 SV=1	[more]
A0A0D2MF43_GOSRA	3.2e-72	57.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G235900 PE=4 SV=1	[more]
B9T2S1_RICCO	2.1e-71	59.19	Syntaxin, plant, putative OS=Ricinus communis GN=RCOM_0437400 PE=4 SV=1	[more]
A0A0A0LE50_CUCSA	7.9e-71	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778990 PE=4 SV=1	[more]

BLAST of Lsi03G018320 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35980.1	6.0e-62	52.40	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G06320.1	9.0e-58	48.25	NDR1/HIN1-like 3	[more]
AT3G11650.1	3.1e-50	42.86	NDR1/HIN1-like 2	[more]
AT2G35460.1	4.6e-46	40.34	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G32270.1	1.2e-25	38.93	syntaxin, putative	[more]

BLAST of Lsi03G018320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084478\|ref\|XP_008442908.1\|	1.6e-109	86.04	PREDICTED: protein YLS9 [Cucumis melo]	[more]
gi\|778684454\|ref\|XP_011652031.1\|	3.1e-108	84.68	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|449437456\|ref\|XP_004136508.1\|	6.8e-108	85.14	PREDICTED: protein YLS9 [Cucumis sativus]	[more]
gi\|659084480\|ref\|XP_008442909.1\|	6.8e-108	85.14	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|823136724\|ref\|XP_012468130.1\|	4.6e-72	57.08	PREDICTED: protein YLS9-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G018320.1	Lsi03G018320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 95..198 score: 1.1
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 6..222 score: 5.9E
None	No IPR available	PANTHER	PTHR31415:SF4	HARPIN-INDUCED PROTEIN-LIKE-RELATED	coord: 6..222 score: 5.9E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G018320	Silver-seed gourd	carlsiB215
Lsi03G018320	Silver-seed gourd	carlsiB225
Lsi03G018320	Silver-seed gourd	carlsiB378
Lsi03G018320	Silver-seed gourd	carlsiB620
Lsi03G018320	Silver-seed gourd	carlsiB744
Lsi03G018320	Cucumber (Chinese Long) v3	cuclsiB203
Lsi03G018320	Cucumber (Chinese Long) v3	cuclsiB207
Lsi03G018320	Cucumber (Chinese Long) v3	cuclsiB477
Lsi03G018320	Cucumber (Chinese Long) v3	cuclsiB474
Lsi03G018320	Watermelon (97103) v2	lsiwmbB218
Lsi03G018320	Watermelon (97103) v2	lsiwmbB228
Lsi03G018320	Wax gourd	lsiwgoB294
Lsi03G018320	Wax gourd	lsiwgoB330
Lsi03G018320	Wax gourd	lsiwgoB333
Lsi03G018320	Bottle gourd (USVL1VR-Ls)	lsilsiB040
Lsi03G018320	Bottle gourd (USVL1VR-Ls)	lsilsiB070
Lsi03G018320	Cucumber (Gy14) v1	cgylsiB088
Lsi03G018320	Cucumber (Gy14) v1	cgylsiB311
Lsi03G018320	Cucumber (Gy14) v1	cgylsiB402
Lsi03G018320	Cucumber (Gy14) v1	cgylsiB524
Lsi03G018320	Cucurbita maxima (Rimu)	cmalsiB242
Lsi03G018320	Cucurbita maxima (Rimu)	cmalsiB609
Lsi03G018320	Cucurbita maxima (Rimu)	cmalsiB754
Lsi03G018320	Cucurbita maxima (Rimu)	cmalsiB800
Lsi03G018320	Cucurbita moschata (Rifu)	cmolsiB230
Lsi03G018320	Cucurbita moschata (Rifu)	cmolsiB597
Lsi03G018320	Cucurbita moschata (Rifu)	cmolsiB747
Lsi03G018320	Cucurbita moschata (Rifu)	cmolsiB787
Lsi03G018320	Cucurbita pepo (Zucchini)	cpelsiB062
Lsi03G018320	Cucurbita pepo (Zucchini)	cpelsiB243
Lsi03G018320	Cucurbita pepo (Zucchini)	cpelsiB503
Lsi03G018320	Cucurbita pepo (Zucchini)	cpelsiB707
Lsi03G018320	Wild cucumber (PI 183967)	cpilsiB049
Lsi03G018320	Wild cucumber (PI 183967)	cpilsiB184
Lsi03G018320	Wild cucumber (PI 183967)	cpilsiB452
Lsi03G018320	Wild cucumber (PI 183967)	cpilsiB455
Lsi03G018320	Cucumber (Chinese Long) v2	culsiB049
Lsi03G018320	Cucumber (Chinese Long) v2	culsiB186
Lsi03G018320	Cucumber (Chinese Long) v2	culsiB448
Lsi03G018320	Melon (DHL92) v3.5.1	lsimeB260
Lsi03G018320	Melon (DHL92) v3.5.1	lsimeB264
Lsi03G018320	Melon (DHL92) v3.5.1	lsimeB274
Lsi03G018320	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G018320	Watermelon (Charleston Gray)	lsiwcgB235
Lsi03G018320	Watermelon (97103) v1	lsiwmB240
Lsi03G018320	Cucumber (Gy14) v2	cgyblsiB171
Lsi03G018320	Cucumber (Gy14) v2	cgyblsiB414
Lsi03G018320	Cucumber (Gy14) v2	cgyblsiB410
Lsi03G018320	Melon (DHL92) v3.6.1	lsimedB273
Lsi03G018320	Melon (DHL92) v3.6.1	lsimedB277
Lsi03G018320	Melon (DHL92) v3.6.1	lsimedB287