Lsi03G015530 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G015530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribosomal protein L23, component of cytosolic 80S ribosome and 60S large subunit
Location	chr03 : 26505308 .. 26505688 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAGCGAGGGCACGAAGGATCTACATGTAACAAGTTTAGGATGTCACTAGGTCTACCAGTGGCGGTGATGGTATATTGTGCCCAGAACACTGGAGCCAAGAACTTGTACATCATCACAGTGCAGGATATCAAGGAGCGTTTGAACAGATTGCCATTGGCCTGTGTTGGATACATGGTAATGAAAACTGTAAAAAAGGGAAAGCCCGATATGAAGAAAAATGTCCTCCCTAATGTCATTGTCAAGCAACGCAAGCCATGGCAGCGAAAGGATGGGGTTTTCACGTACTTTAAAGATAATGCAATTGCTAGTCCTATTGGAAAGGAGTGTGCAGATTTGTGGCCTAGGATAGCAAGTGCAGCCAATGCTATTGTTTAG

mRNA sequence

ATGTCAAAGCGAGGGCACGAAGGATCTACATGTAACAAGTTTAGGATGTCACTAGGTCTACCAGTGGCGGTGATGGTATATTGTGCCCAGAACACTGGAGCCAAGAACTTGTACATCATCACAGTGCAGGATATCAAGGAGCGTTTGAACAGATTGCCATTGGCCTGTGTTGGATACATGGTAATGAAAACTGTAAAAAAGGGAAAGCCCGATATGAAGAAAAATGTCCTCCCTAATGTCATTGTCAAGCAACGCAAGCCATGGCAGCGAAAGGATGGGGTTTTCACGTACTTTAAAGATAATGCAATTGCTAGTCCTATTGGAAAGGAGTGTGCAGATTTGTGGCCTAGGATAGCAAGTGCAGCCAATGCTATTGTTTAG

Coding sequence (CDS)

ATGTCAAAGCGAGGGCACGAAGGATCTACATGTAACAAGTTTAGGATGTCACTAGGTCTACCAGTGGCGGTGATGGTATATTGTGCCCAGAACACTGGAGCCAAGAACTTGTACATCATCACAGTGCAGGATATCAAGGAGCGTTTGAACAGATTGCCATTGGCCTGTGTTGGATACATGGTAATGAAAACTGTAAAAAAGGGAAAGCCCGATATGAAGAAAAATGTCCTCCCTAATGTCATTGTCAAGCAACGCAAGCCATGGCAGCGAAAGGATGGGGTTTTCACGTACTTTAAAGATAATGCAATTGCTAGTCCTATTGGAAAGGAGTGTGCAGATTTGTGGCCTAGGATAGCAAGTGCAGCCAATGCTATTGTTTAG

Protein sequence

MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYMVMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDNAIASPIGKECADLWPRIASAANAIV

Homology

[Close]

BLAST of Lsi03G015530 vs. Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 194.1 bits (492), Expect = 9.1e-49
Identity = 100/140 (71.43%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  G++ NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K VLP VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.5e-48
Identity = 98/140 (70.00%), Postives = 108/140 (77.14%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS  NKFRMSLGLPVA  + CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K V+P V+V+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.7e-45
Identity = 94/140 (67.14%), Postives = 106/140 (75.71%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS+ NKFRMSLGLPV  +V CA NTGAKNLY+I+   ++ RLNRLP A VG M
Sbjct: 1   MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K V+P VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 139

[Close]

BLAST of Lsi03G015530 vs. Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-39
Identity = 84/139 (60.43%), Postives = 101/139 (72.66%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS+  KFR+SLGLPV  ++ CA NTGAKNLYII+V+ IK RLNRLP A VG M
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKP+++K V P V+++QRK ++RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAI 126
           + KECADLWPRIAS A +I
Sbjct: 121 VAKECADLWPRIASNAGSI 139

[Close]

BLAST of Lsi03G015530 vs. Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-39
Identity = 84/139 (60.43%), Postives = 101/139 (72.66%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS+  KFR+SLGLPV  ++ CA NTGAKNLYII+V+ IK RLNRLP A VG M
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKP+++K V P V+++QRK ++RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAI 126
           + KECADLWPRIAS A +I
Sbjct: 121 VAKECADLWPRIASNAGSI 139

[Close]

BLAST of Lsi03G015530 vs. TrEMBL
Match: A0A067DP37_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032476mg PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.1e-48
Identity = 98/126 (77.78%), Postives = 107/126 (84.92%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS  NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDNAIASPIGKECADLWPRIAS 120
           VM TVKKGKPD++K V+P VIV+QRKPW+RKDGVF YF+ +AI  PIGKECADLWPRIAS
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGSAITGPIGKECADLWPRIAS 120

Query: 121 AANAIV 127
           AANAIV
Sbjct: 121 AANAIV 126

[Close]

BLAST of Lsi03G015530 vs. TrEMBL
Match: Q9ATF6_CASSA (Ribosomal protein L17 OS=Castanea sativa PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.9e-47
Identity = 101/140 (72.14%), Postives = 108/140 (77.14%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS  NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K VLP VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. TrEMBL
Match: V7BH47_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G164200g PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.9e-47
Identity = 101/140 (72.14%), Postives = 108/140 (77.14%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS  NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K VLP VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. TrEMBL
Match: M5WP13_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013088mg PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.9e-47
Identity = 101/140 (72.14%), Postives = 108/140 (77.14%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS  NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K VLP VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. TrEMBL
Match: I3S209_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.9e-47
Identity = 101/140 (72.14%), Postives = 108/140 (77.14%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS  NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K VLP VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. TAIR10
Match: AT1G04480.1 (AT1G04480.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 194.1 bits (492), Expect = 5.1e-50
Identity = 100/140 (71.43%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  G++ NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K VLP VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. TAIR10
Match: AT2G33370.1 (AT2G33370.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 194.1 bits (492), Expect = 5.1e-50
Identity = 100/140 (71.43%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  G++ NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K VLP VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. TAIR10
Match: AT3G04400.1 (AT3G04400.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 194.1 bits (492), Expect = 5.1e-50
Identity = 100/140 (71.43%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  G++ NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K VLP VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. NCBI nr
Match: gi|641823976|gb|KDO43340.1| (hypothetical protein CISIN_1g032476mg [Citrus sinensis])

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-48
Identity = 98/126 (77.78%), Postives = 107/126 (84.92%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS  NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDNAIASPIGKECADLWPRIAS 120
           VM TVKKGKPD++K V+P VIV+QRKPW+RKDGVF YF+ +AI  PIGKECADLWPRIAS
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGSAITGPIGKECADLWPRIAS 120

Query: 121 AANAIV 127
           AANAIV
Sbjct: 121 AANAIV 126

[Close]

BLAST of Lsi03G015530 vs. NCBI nr
Match: gi|902209937|gb|KNA16312.1| (hypothetical protein SOVF_090210 [Spinacia oleracea])

HSP 1 Score: 194.9 bits (494), Expect = 8.5e-47
Identity = 100/140 (71.43%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS  NKFRMSLGLPVA +V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAAVVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K V+P VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. NCBI nr
Match: gi|470120643|ref|XP_004296407.1| (PREDICTED: 60S ribosomal protein L23 [Fragaria vesca subsp. vesca])

HSP 1 Score: 194.9 bits (494), Expect = 8.5e-47
Identity = 101/140 (72.14%), Postives = 108/140 (77.14%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS  NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K VLP VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. NCBI nr
Match: gi|568215140|ref|NP_001274965.1| (ribosomal protein L17-like protein [Solanum tuberosum])

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-46
Identity = 100/140 (71.43%), Postives = 108/140 (77.14%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  GS  NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K V+P VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lsi03G015530 vs. NCBI nr
Match: gi|15226102|ref|NP_180895.1| (60S ribosomal protein L23B [Arabidopsis thaliana])

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-46
Identity = 100/140 (71.43%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MSKRGHEGSTCNKFRMSLGLPVAVMVYCAQNTGAKNLYIITVQDIKERLNRLPLACVGYM 60
           MSKRG  G++ NKFRMSLGLPVA  V CA NTGAKNLYII+V+ IK RLNRLP ACVG M
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMKTVKKGKPDMKKNVLPNVIVKQRKPWQRKDGVFTYFKDN--------------AIASP 120
           VM TVKKGKPD++K VLP VIV+QRKPW+RKDGVF YF+DN              AI  P
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 127
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

The following BLAST results are available for this feature:

BLAST of Lsi03G015530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL23_ARATH	9.1e-49	71.43	60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3	[more]
RL23_TOBAC	1.5e-48	70.00	60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1	[more]
RL23_TORRU	2.7e-45	67.14	60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1	[more]
RL23_RAT	1.3e-39	60.43	60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1	[more]
RL23_BOVIN	1.3e-39	60.43	60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2	[more]

BLAST of Lsi03G015530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067DP37_CITSI	3.1e-48	77.78	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032476mg PE=3 SV=1	[more]
Q9ATF6_CASSA	5.9e-47	72.14	Ribosomal protein L17 OS=Castanea sativa PE=2 SV=1	[more]
V7BH47_PHAVU	5.9e-47	72.14	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G164200g PE=3 SV=1	[more]
M5WP13_PRUPE	5.9e-47	72.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013088mg PE=3 SV=1	[more]
I3S209_LOTJA	5.9e-47	72.14	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of Lsi03G015530 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04480.1	5.1e-50	71.43	Ribosomal protein L14p/L23e family protein	[more]
AT2G33370.1	5.1e-50	71.43	Ribosomal protein L14p/L23e family protein	[more]
AT3G04400.1	5.1e-50	71.43	Ribosomal protein L14p/L23e family protein	[more]

BLAST of Lsi03G015530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|641823976\|gb\|KDO43340.1\|	4.5e-48	77.78	hypothetical protein CISIN_1g032476mg [Citrus sinensis]	[more]
gi\|902209937\|gb\|KNA16312.1\|	8.5e-47	71.43	hypothetical protein SOVF_090210 [Spinacia oleracea]	[more]
gi\|470120643\|ref\|XP_004296407.1\|	8.5e-47	72.14	PREDICTED: 60S ribosomal protein L23 [Fragaria vesca subsp. vesca]	[more]
gi\|568215140\|ref\|NP_001274965.1\|	1.4e-46	71.43	ribosomal protein L17-like protein [Solanum tuberosum]	[more]
gi\|15226102\|ref\|NP_180895.1\|	1.4e-46	71.43	60S ribosomal protein L23B [Arabidopsis thaliana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR000218	Ribosomal_L14P

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G015530.1	Lsi03G015530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	GENE3D	G3DSA:2.40.150.20		coord: 12..126 score: 1.3
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 1..126 score: 5.6
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 24..103 score: 2.9
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 19..126 score: 6.0
IPR000218	Ribosomal protein L14P	unknown	SSF50193	Ribosomal protein L14	coord: 13..126 score: 4.84
None	No IPR available	PANTHER	PTHR11761:SF10	SUBFAMILY NOT NAMED	coord: 1..126 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G015530	Cucumber (Gy14) v1	cgylsiB551
Lsi03G015530	Cucurbita maxima (Rimu)	cmalsiB242
Lsi03G015530	Cucurbita maxima (Rimu)	cmalsiB753
Lsi03G015530	Cucurbita moschata (Rifu)	cmolsiB230
Lsi03G015530	Cucurbita moschata (Rifu)	cmolsiB745
Lsi03G015530	Cucurbita pepo (Zucchini)	cpelsiB503
Lsi03G015530	Wild cucumber (PI 183967)	cpilsiB184
Lsi03G015530	Cucumber (Chinese Long) v2	culsiB186
Lsi03G015530	Melon (DHL92) v3.5.1	lsimeB260
Lsi03G015530	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G015530	Watermelon (97103) v1	lsiwmB240
Lsi03G015530	Cucumber (Gy14) v2	cgyblsiB171
Lsi03G015530	Melon (DHL92) v3.6.1	lsimedB273
Lsi03G015530	Silver-seed gourd	carlsiB292
Lsi03G015530	Cucumber (Chinese Long) v3	cuclsiB203
Lsi03G015530	Watermelon (97103) v2	lsiwmbB218
Lsi03G015530	Wax gourd	lsiwgoB303