Lsi03G011200 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G011200
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 21403720 .. 21407423 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTCTCCCCTTCCATGAAACGTTCTTTTATAGTCAACGTCCTGCTTTCAAACTTTTAAAACGGACCGATGTGGGACAATCTCTTTTCAAGTTCCATAGCAATTCCACGGATTTCAATCTCAATTTCGTTTATGTTTTCGTTAATCCCTTACAACTATTTCTTTCTGAAAAATGATTATTGAACACTTTAATGTATAAATTATTGATGCATTTCTCATTTACAAAGATTTCCTTCCTGTTTTTTATTTCCAAAAATTGCAATCTAAGTGCGGTAAACTCCGATGTTGTAAATTGTAATGTATAATATTATTAGAATGACTTAAAAGGAAAATTACCTTTTGATTTTCTTCTTTTCTTATTTCAATTTATTTTTACTTTTTTGTATATATTTATATTAGTTTCAATAATTTTTCATTTTTATACTTTTAGTTTTGGTACTACTTTACTTTCAATTTTTCTTTTCATTTTAGATTCTCTACTTTCAAAATGTCAATTTTCATTCTTATACTTTTAAAAGATGACATTTTGATCCTTTAATTTTTATTTTTATTGTTGTAAATAAAGACTAAAATGATCATATTAAATATAGAGACCAAAATGAACATTTTGAAAGTACATGAACTAAATTGAATATTTTAAAAGTAAATGAATCAAAGTTCGAAAGCATATTTAAACTTTTTATATTTGTTTTATACTTATCATTAGCATTGATGTGCATTGAGAAAATAAAGATAGTAATGGTTTGTATTGAGATTTAAACATTGATGTTTAGAGAGAAGAATGGAGAATAATAATTTTGTTTGAGATTTTAACATAAATTAATGCTCAAAAGAAATAAATATGGTAATATTTTCATCGATATATGGAGATGGTTACATGAAAATATTAAATATATACCTATTGAAAATTCTATTATATTCAGACTTGCAATACTTAGGGTTTAGTTTTTTTATGGTAAAAAGTTGATTCTTAAAAGTTTTTTTATTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAATTCTAACTAGAAATTTTGATAAAGGGCTAGAGGGAGGGAGATTGGAAGAAAGAAGGCAGAGAGAGAACTTTGTGGGATTTAGGTCAGGTTTTGACTCTATTTCATTTAACTAATGTTTTATTGTTCTTTTTATATATAATGATCATAATTTTAGTGACGCCAAGATGTTCATCAAATAGCATTGAAAAGAATGTTAAGTTACACATTTAGCCTATAAATTAAACTTTAAGGTTTGTGACGGTTGGTCTCTAAACTAACTTTTAATCTCTTAAAATTATTGATATGCTAGACACAAACCTCCCCTAACTCCATTCCCCACAGTTGCAAGTTCAATAGTGCTAAAGTCCCATGTTTCAGATTTCCAAAATGGATGCCTTTGTCCGAAGTAAAATACAAAGGAAAGTTCAAAATGGCATTGATTCTCTATTTTGGTATCATCACTTGAACTCCAATGGTATTCTTCCTCAACTTTTGCCCAGATTTTTTGCTTCATTTGGAATCTTAGCTTTAGAAGAACTTTGTTGACTCATGAATCGGAGATTTGTAATCAAATTTCTTGTAGCTCCCCCCCTCTCCCCCCACATCTTCCAATAGTGATGATATATTTATCTGGTCCCTTGTATTGAATGGACTTTTCTGTTAGATCTGTAAAAGAGTTATTGATGAAGCCTCTAATACAACCCACATCATTGAGGTTTCTCATCGGTGAAAATCATCCCTTCCCAAAAAATGCAGATACTTTATATAAACGTTACTTCATAAAGGTCTCAATACCATCGATAAATGTCAAGTGTGTTTTCCCACTTTAAATCTCAATCCTAATTGGTGTGTGCTATGTAGAATCCAAGGAGAAAATGTTGATCAATTATTTGTTAACTGCTCTCTCTCCCATGTGATTTGGCTCATTTACGTGCATCTATTCTTGGTATTCCATATTTGTTGGATGGTCTCCTCGATACTTTGATACACCTCTAAAAGAATTCGATCAAGAAAGTCTTATTGTGCAACTTGATTGGTGCTACCTTAGGGAGCCTATTACAATTTATGCAATTAGCATTTGGTTTTATTTTTATTACTAATATATATCGTAAGTGATTACATATATATATATATATAATAAGTATAGGATTTAGTTCTAATAAAATTATATAATGAAATGTCATTCAGAAAGGGAAAAAAACATTCCTTTAATAAAAAGAAAGGGAAAAATGTATATATATGTGAGATTTAGATAAATATAGTATAAACCTTTAATAAACTATTCTACTTAAGCCAATATGTTAGGTGGATGTTGATGTTGGGGAAAAAAACACACAAAAACGAAAACAAAAGTTGTGAATTTGATTAGAGTAGTTTAATTTGATATGAATTTTGTGTTGTTTATTGTAGAAATGTGAGACAAAAATGTACCCATAGATGTATATGCTCCAATATTAAGTAATGGGTTTTTATAACAACTCAACAAAAAGATTAACCAACAACTCAAAGCAATGGGTTTTATTTTCAATCAATACTCAGTGATTGGAAGTGGGAGAGCCTATTTTTGGAAGGATAGCTTATAGACCCTTCTCTACAGCCATTTTTCATCATTCATTTCAATCCTTTTTCATTGACTTTAGGTTGTGTTTATATTCTGGTTGGTTAATAAACACAAAATTATAATTAATTAGGGTTGGTATAGTATGTACTAAACAAAATAATCTATATTACACATCAACCTTTTGTCAAATATAAGAACTAAAATGAAAACGTAACTCAAAGGAATAAAAATGTATAATTCGTTGAATTATTTTTAAAAAGATTAAAAATTGGGGTGAGAGAGGCTCGAACTCTCGACCTCAGGATAACTCTTTAAGCTATGAGACCTACGCGCTAGCCAACTGCGCCACCACCCCTTGT

mRNA sequence

ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTCTCCCCTTCCATGAAACGTTCTTTTATAGTCAACGTCCTGCTTTCAAACTTTTAAAACGGACCGATATTAAAAATTGGGGTGAGAGAGGCTCGAACTCTCGACCTCAGGATAACTCTTTAAGCTATGAGACCTACGCGCTAGCCAACTGCGCCACCACCCCTTGT

Coding sequence (CDS)

ATGCTTCTCCCCTTCCATGAAACGTTCTTTTATAGTCAACGTCCTGCTTTCAAACTTTTAAAACGGACCGATATTAAAAATTGGGGTGAGAGAGGCTCGAACTCTCGACCTCAGGATAACTCTTTAAGCTATGAGACCTACGCGCTAGCCAACTGCGCCACCACCCCTTGT

Protein sequence

MLLPFHETFFYSQRPAFKLLKRTDIKNWGERGSNSRPQDNSLSYETYALANCATTPC
Homology
[Close]
BLAST of Lsi03G011200 vs. TrEMBL
Match: A5ADA6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000716 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 22  RTDIKNWGERGSNSRPQDNSLSYETYALANCATTP 57
           R  IK WGERGSNSRPQD+S SYETYALANCATTP
Sbjct: 669 RAKIKQWGERGSNSRPQDHSNSYETYALANCATTP 703

[Close]
BLAST of Lsi03G011200 vs. NCBI nr
Match: gi|147787053|emb|CAN62332.1| (hypothetical protein VITISV_000716 [Vitis vinifera])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 22  RTDIKNWGERGSNSRPQDNSLSYETYALANCATTP 57
           R  IK WGERGSNSRPQD+S SYETYALANCATTP
Sbjct: 669 RAKIKQWGERGSNSRPQDHSNSYETYALANCATTP 703

The following BLAST results are available for this feature:
BLAST of Lsi03G011200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G011200 vs. TrEMBL
Match NameE-valueIdentityDescription
A5ADA6_VITVI1.9e-0885.71Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000716 PE=4 SV=1[more]
BLAST of Lsi03G011200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G011200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147787053|emb|CAN62332.1|2.7e-0885.71hypothetical protein VITISV_000716 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G011200.1Lsi03G011200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G011200Bottle gourd (USVL1VR-Ls)lsilsiB091
Lsi03G011200Cucumber (Gy14) v1cgylsiB352
Lsi03G011200Cucurbita maxima (Rimu)cmalsiB240
Lsi03G011200Cucurbita maxima (Rimu)cmalsiB350
Lsi03G011200Cucurbita maxima (Rimu)cmalsiB351
Lsi03G011200Cucurbita maxima (Rimu)cmalsiB422
Lsi03G011200Cucurbita maxima (Rimu)cmalsiB831
Lsi03G011200Cucurbita maxima (Rimu)cmalsiB832
Lsi03G011200Cucurbita moschata (Rifu)cmolsiB228
Lsi03G011200Cucurbita moschata (Rifu)cmolsiB339
Lsi03G011200Cucurbita moschata (Rifu)cmolsiB340
Lsi03G011200Cucurbita moschata (Rifu)cmolsiB409
Lsi03G011200Cucurbita moschata (Rifu)cmolsiB817
Lsi03G011200Cucurbita moschata (Rifu)cmolsiB818
Lsi03G011200Cucurbita pepo (Zucchini)cpelsiB115
Lsi03G011200Cucurbita pepo (Zucchini)cpelsiB116
Lsi03G011200Cucurbita pepo (Zucchini)cpelsiB266
Lsi03G011200Cucurbita pepo (Zucchini)cpelsiB452
Lsi03G011200Cucurbita pepo (Zucchini)cpelsiB500
Lsi03G011200Wild cucumber (PI 183967)cpilsiB530
Lsi03G011200Cucumber (Chinese Long) v2culsiB516
Lsi03G011200Melon (DHL92) v3.5.1lsimeB240
Lsi03G011200Melon (DHL92) v3.5.1lsimeB252
Lsi03G011200Watermelon (Charleston Gray)lsiwcgB217
Lsi03G011200Watermelon (Charleston Gray)lsiwcgB219
Lsi03G011200Watermelon (Charleston Gray)lsiwcgB246
Lsi03G011200Watermelon (97103) v1lsiwmB234
Lsi03G011200Watermelon (97103) v1lsiwmB240
Lsi03G011200Watermelon (97103) v1lsiwmB280
Lsi03G011200Cucumber (Gy14) v2cgyblsiB483
Lsi03G011200Melon (DHL92) v3.6.1lsimedB266
Lsi03G011200Silver-seed gourdcarlsiB064
Lsi03G011200Silver-seed gourdcarlsiB099
Lsi03G011200Silver-seed gourdcarlsiB410
Lsi03G011200Silver-seed gourdcarlsiB699
Lsi03G011200Silver-seed gourdcarlsiB748
Lsi03G011200Cucumber (Chinese Long) v3cuclsiB550
Lsi03G011200Watermelon (97103) v2lsiwmbB218
Lsi03G011200Watermelon (97103) v2lsiwmbB239
Lsi03G011200Watermelon (97103) v2lsiwmbB253
Lsi03G011200Wax gourdlsiwgoB292
Lsi03G011200Wax gourdlsiwgoB315
Lsi03G011200Wax gourdlsiwgoB343