Lsi03G010610 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G010610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transducin/WD40 repeat-like superfamily protein
Location	chr03 : 20344557 .. 20345963 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAAACGGCGTCGTTTTTTTGTGGTAACCCTAACAGTTAATCGATTGGAGCGAACTGGTTGGAAGTTTCAGTGGCGCGCCTCCAACGGTTGGTTCAATTCCCCCATTGATTTCCATCTAAACCCTAAAACCCTTCACCCAATTTCTATACTTACTTCACAAACTTGTTCGTAATTTTGCTCTGTTTCATTGCATAGAGAGAGAGAAGAAAAAAAAAAATGGAATCCATTGATATGGATGTCGAGGAGCACGCCAATGCCGATACGAGTACAAATTCCAGCTCCTTCCAGCGCTTTGGACTCAAGAATTCCATTCAAACCAACTTCGGTGATGATTACGTTTTTCACATCGCTCCCAAGTAAGAAATTTCCAATTGGGTCTATGTCGTTTCAATTTTTGTCTCGGTAACAAAAGGGTTTTGTTCTTGCTCCTTTTTGAAGTGCTGATTGGACGTCAATGGCGGTGTCATTATCTTCCAATGTTGTGAAGCTATACTCACCAGTGACTGGTCAGTACTATGGAGAGTGCAGAGGTCACACTGGAACAATCAATCAAATTTCGTTCTCTGTTCCATCAACCCCACATGTATTGCATTCTTGTTCTTCTGATGGAACTATCAGATCTTGGGATGTGCGGACTTGTCAGCAGGTTTGCTTCTTTCTCTCTGGTTATTACTTTTATTCATTTTTGGGTCTGGGAATTTGGGTTATACTCCTCTTGTCTGCTACAATTGCAGGTTTCATCCATTAGTGCTGGCCCTTCTCAAGAGATCTTCAGCTTTGCATATGGAGGATCAAACATGAGTCTTCTTGCTGCAGGTGGTATTTCTCAGGTAGGTTTAATTTTGTCAGAGAGTGCCGGGAATCTTTTGTGAATTCATTTAGGTTCACTTATAAGATTGGTGTTTGAACTTTCAGTGTTGTGCTTAGTCTCTAAACTTTTAAAAATGGCTAATAGGTCCACAAACTATCACTGTTGTGTTTAACAAATTTCTTAACTTTACAAAGTGTTCAGTAGTTTGTTAGACTTTCAATTTGTGCCTTATAGGTCTTTGATCTATATGACAAATTTTAAAGCTTAGGGATCTATTAGATACAAAATTAAGAAATTTACTAGACATGTTTTAGAGTTCATGAACCTATTAGACATAAAATTGAAGATACTGATTAATGACTATAAAACTTCAAGGACCAAACTTGTAATTTAACCATTAATTTATCAAAAAATTTAAAAGTATGAGATATTTCAATTGATGAGTTTAGAGACAATAGGGAAGAAAACTCTTGTGATTTAATTGTACTTATATGGCAATGTTACTCAGATTCTCTTCTGGGATTGGCGGAACAGAAAGCAAGTTGCATGCTTGGAGGACTCTCATGTGGAAGATGTGACTCAGGTTCTCCCTGA

mRNA sequence

CTGAAACGGCGTCGTTTTTTTGTGGTAACCCTAACAGTTAATCGATTGGAGCGAACTGGTTGGAAGTTTCAGTGGCGCGCCTCCAACGGTTGGTTCAATTCCCCCATTGATTTCCATCTAAACCCTAAAACCCTTCACCCAATTTCTATACTTACTTCACAAACTTGTTCGTAATTTTGCTCTGTTTCATTGCATAGAGAGAGAGAAGAAAAAAAAAAATGGAATCCATTGATATGGATGTCGAGGAGCACGCCAATGCCGATACGAGTACAAATTCCAGCTCCTTCCAGCGCTTTGGACTCAAGAATTCCATTCAAACCAACTTCGGTGATGATTACGTTTTTCACATCGCTCCCAATGCTGATTGGACGTCAATGGCGGTGTCATTATCTTCCAATGTTGTGAAGCTATACTCACCAGTGACTGGTCAGTACTATGGAGAGTGCAGAGGTCACACTGGAACAATCAATCAAATTTCGTTCTCTGTTCCATCAACCCCACATGTATTGCATTCTTGTTCTTCTGATGGAACTATCAGATCTTGGGATGTGCGGACTTGTCAGCAGGTTTCATCCATTAGTGCTGGCCCTTCTCAAGAGATCTTCAGCTTTGCATATGGAGGATCAAACATGAGTCTTCTTGCTGCAGGTGATTCTCTTCTGGGATTGGCGGAACAGAAAGCAAGTTGCATGCTTGGAGGACTCTCATGTGGAAGATGTGACTCAGGTTCTCCCTGA

Coding sequence (CDS)

ATGGAATCCATTGATATGGATGTCGAGGAGCACGCCAATGCCGATACGAGTACAAATTCCAGCTCCTTCCAGCGCTTTGGACTCAAGAATTCCATTCAAACCAACTTCGGTGATGATTACGTTTTTCACATCGCTCCCAATGCTGATTGGACGTCAATGGCGGTGTCATTATCTTCCAATGTTGTGAAGCTATACTCACCAGTGACTGGTCAGTACTATGGAGAGTGCAGAGGTCACACTGGAACAATCAATCAAATTTCGTTCTCTGTTCCATCAACCCCACATGTATTGCATTCTTGTTCTTCTGATGGAACTATCAGATCTTGGGATGTGCGGACTTGTCAGCAGGTTTCATCCATTAGTGCTGGCCCTTCTCAAGAGATCTTCAGCTTTGCATATGGAGGATCAAACATGAGTCTTCTTGCTGCAGGTGATTCTCTTCTGGGATTGGCGGAACAGAAAGCAAGTTGCATGCTTGGAGGACTCTCATGTGGAAGATGTGACTCAGGTTCTCCCTGA

Protein sequence

MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISAGPSQEIFSFAYGGSNMSLLAAGDSLLGLAEQKASCMLGGLSCGRCDSGSP

Homology

[Close]

BLAST of Lsi03G010610 vs. TrEMBL
Match: A0A0A0KWI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001690 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.7e-69
Identity = 131/144 (90.97%), Postives = 138/144 (95.83%), Query Frame = 1


Query: 1   MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSN 60
           MESIDMDVEEH NAD+++NS+SF+RFGLKNSIQTNFGDDYVFHI PN DWTSMAVSLSSN
Sbjct: 1   MESIDMDVEEHVNADSTSNSNSFKRFGLKNSIQTNFGDDYVFHITPNVDWTSMAVSLSSN 60

Query: 61  VVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSI 120
           VVKLYSPVTGQYYGEC GHTGT+NQISFSVPSTPHVLHSCSSDGTI+SWDVRT QQVSSI
Sbjct: 61  VVKLYSPVTGQYYGECIGHTGTVNQISFSVPSTPHVLHSCSSDGTIKSWDVRTFQQVSSI 120

Query: 121 SAGPSQEIFSFAYGGSNMSLLAAG 145
           SAG SQEIFSFAYGGSNMSLLAAG
Sbjct: 121 SAGSSQEIFSFAYGGSNMSLLAAG 144

[Close]

BLAST of Lsi03G010610 vs. TrEMBL
Match: A0A059A7G2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03468 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-50
Identity = 97/141 (68.79%), Postives = 119/141 (84.40%), Query Frame = 1


Query: 4   IDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVVK 63
           ++++ EEH+ + ++ + SSF+RFGLKNSIQTNFG DYVF I P  DW+ M VSLSSN VK
Sbjct: 11  VEVEAEEHSPSSSNPSGSSFRRFGLKNSIQTNFGSDYVFEITPKFDWSLMGVSLSSNAVK 70

Query: 64  LYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISAG 123
           LYSP TGQY GECRGH+ T+N ISFS PS+PHVLHSCSSDGTIR+WD R+ ++VS ISAG
Sbjct: 71  LYSPTTGQYCGECRGHSDTVNGISFSGPSSPHVLHSCSSDGTIRAWDTRSFKEVSCISAG 130

Query: 124 PSQEIFSFAYGGSNMSLLAAG 145
           PSQEIFSF++GGS+ SLL+AG
Sbjct: 131 PSQEIFSFSFGGSSDSLLSAG 151

[Close]

BLAST of Lsi03G010610 vs. TrEMBL
Match: W9QN30_9ROSA (WD repeat-containing protein 89-like protein OS=Morus notabilis GN=L484_001117 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-50
Identity = 103/143 (72.03%), Postives = 119/143 (83.22%), Query Frame = 1


Query: 2   ESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNV 61
           E+  M+VEEH ++    N SS  R GLKNSIQT+FG+DYVF I P  DW+SMAVSLS+NV
Sbjct: 3   EATAMEVEEHPHS----NPSSSNRVGLKNSIQTSFGEDYVFQIVPKNDWSSMAVSLSTNV 62

Query: 62  VKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSIS 121
           VKLYSPVTGQ+YGEC+GH+ TIN I FS PSTPHVLHSCSSDGTIR+WD RT QQVSS+S
Sbjct: 63  VKLYSPVTGQFYGECKGHSDTINHIYFSGPSTPHVLHSCSSDGTIRAWDTRTFQQVSSVS 122

Query: 122 AGPSQEIFSFAYGGSNMSLLAAG 145
           AG SQEIFSF++GGS  +LLAAG
Sbjct: 123 AGSSQEIFSFSFGGSTDNLLAAG 141

[Close]

BLAST of Lsi03G010610 vs. TrEMBL
Match: A0A061DQG0_THECC (Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_004633 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.8e-50
Identity = 100/143 (69.93%), Postives = 116/143 (81.12%), Query Frame = 1


Query: 2   ESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNV 61
           E+ +M+VEE        N SS +RFGLKNSIQTNFGDDYVF I P  DW SMAVSLS+N 
Sbjct: 29  EASEMEVEEQKQP-VQNNQSSTKRFGLKNSIQTNFGDDYVFQIVPKDDWASMAVSLSTNA 88

Query: 62  VKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSIS 121
           VKLYSP+TGQY+GEC+GHT TIN ISFS PSTPH +HSCSSDGTIR+WD RT  QVS I+
Sbjct: 89  VKLYSPMTGQYFGECKGHTSTINHISFSGPSTPHTMHSCSSDGTIRAWDTRTFHQVSCIT 148

Query: 122 AGPSQEIFSFAYGGSNMSLLAAG 145
           AG SQE+FSF++GGS+ +LLAAG
Sbjct: 149 AGSSQEVFSFSFGGSDDNLLAAG 170

[Close]

BLAST of Lsi03G010610 vs. TrEMBL
Match: I1NB53_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G210500 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-49
Identity = 102/142 (71.83%), Postives = 116/142 (81.69%), Query Frame = 1


Query: 3   SIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNVV 62
           S  MDVEE      S N+S  +RFGLKNSIQTNFGDDYVF I PN DW++MAVSLS+N V
Sbjct: 4   SAAMDVEEQP----SPNASDVKRFGLKNSIQTNFGDDYVFQIVPNDDWSAMAVSLSTNAV 63

Query: 63  KLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSISA 122
           KLYSPV GQYYGEC+GH+ TINQI FS PS PHVL SCSSDGTIR+WD+RT QQVSSI+A
Sbjct: 64  KLYSPVAGQYYGECKGHSETINQILFSGPSNPHVLCSCSSDGTIRAWDIRTFQQVSSINA 123

Query: 123 GPSQEIFSFAYGGSNMSLLAAG 145
           GPSQE+FSF  GG+  +L+AAG
Sbjct: 124 GPSQEVFSFCIGGTGGNLVAAG 141

[Close]

BLAST of Lsi03G010610 vs. TAIR10
Match: AT2G47790.1 (AT2G47790.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-47
Identity = 93/145 (64.14%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 3   SIDMDVE-EHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSNV 62
           S +M+VE ++     S+ + + ++FGLKNSIQTNFG DYVF I P  DWT++AVSLS+N 
Sbjct: 5   SSEMEVEVQNRQLSDSSPAQNVKKFGLKNSIQTNFGSDYVFQIVPKIDWTAIAVSLSTNT 64

Query: 63  VKLYSPVTGQYYGECRGHTGTINQISFSVPS--TPHVLHSCSSDGTIRSWDVRTCQQVSS 122
           VKLYSPVTGQYYGEC+GH+ T+NQI+FS  S  +PHVLHSCSSDGTIRSWD R+ QQVS 
Sbjct: 65  VKLYSPVTGQYYGECKGHSDTVNQIAFSSDSAASPHVLHSCSSDGTIRSWDTRSFQQVSR 124

Query: 123 ISAGPSQEIFSFAYGGSNMSLLAAG 145
           I  G  QEIFSF+YGG+  +LLA G
Sbjct: 125 IDTGNDQEIFSFSYGGAADNLLAGG 149

[Close]

BLAST of Lsi03G010610 vs. NCBI nr
Match: gi|659108723|ref|XP_008454355.1| (PREDICTED: WD repeat-containing protein 89 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 2.0e-70
Identity = 133/144 (92.36%), Postives = 140/144 (97.22%), Query Frame = 1


Query: 1   MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSN 60
           MESIDMDVE+H NAD+++NSSSF+RFGLKNSIQTNFGDDYVFHIAPN DWTSMAVSLSSN
Sbjct: 1   MESIDMDVEDHVNADSTSNSSSFKRFGLKNSIQTNFGDDYVFHIAPNVDWTSMAVSLSSN 60

Query: 61  VVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSI 120
           VVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTI+SWD+RT QQVSSI
Sbjct: 61  VVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIKSWDIRTFQQVSSI 120

Query: 121 SAGPSQEIFSFAYGGSNMSLLAAG 145
           SAGPSQEIFSFAYGGSN SLLAAG
Sbjct: 121 SAGPSQEIFSFAYGGSNTSLLAAG 144

[Close]

BLAST of Lsi03G010610 vs. NCBI nr
Match: gi|778689279|ref|XP_011652928.1| (PREDICTED: WD repeat-containing protein 89 homolog [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 8.2e-69
Identity = 131/144 (90.97%), Postives = 138/144 (95.83%), Query Frame = 1


Query: 1   MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSN 60
           MESIDMDVEEH NAD+++NS+SF+RFGLKNSIQTNFGDDYVFHI PN DWTSMAVSLSSN
Sbjct: 1   MESIDMDVEEHVNADSTSNSNSFKRFGLKNSIQTNFGDDYVFHITPNVDWTSMAVSLSSN 60

Query: 61  VVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSI 120
           VVKLYSPVTGQYYGEC GHTGT+NQISFSVPSTPHVLHSCSSDGTI+SWDVRT QQVSSI
Sbjct: 61  VVKLYSPVTGQYYGECIGHTGTVNQISFSVPSTPHVLHSCSSDGTIKSWDVRTFQQVSSI 120

Query: 121 SAGPSQEIFSFAYGGSNMSLLAAG 145
           SAG SQEIFSFAYGGSNMSLLAAG
Sbjct: 121 SAGSSQEIFSFAYGGSNMSLLAAG 144

[Close]

BLAST of Lsi03G010610 vs. NCBI nr
Match: gi|645258806|ref|XP_008235057.1| (PREDICTED: WD repeat-containing protein 89 homolog [Prunus mume])

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 106/144 (73.61%), Postives = 120/144 (83.33%), Query Frame = 1


Query: 1   MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSN 60
           ME+ DMDVEE   +    N +SF+RFGLKNSIQTNFGDDYVF I P  DWT+MAVSLS+N
Sbjct: 1   MEATDMDVEEQPES----NPNSFRRFGLKNSIQTNFGDDYVFQIVPKDDWTAMAVSLSTN 60

Query: 61  VVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSI 120
            VK+YSPVTGQYYGEC+GH+ TIN ISFS PSTPHVLHSCSSDGTIR+WD RT QQVSS 
Sbjct: 61  AVKVYSPVTGQYYGECKGHSATINHISFSGPSTPHVLHSCSSDGTIRAWDTRTFQQVSSF 120

Query: 121 SAGPSQEIFSFAYGGSNMSLLAAG 145
            +G SQEIFSF++GGS  +LLAAG
Sbjct: 121 HSGSSQEIFSFSFGGSANNLLAAG 140

[Close]

BLAST of Lsi03G010610 vs. NCBI nr
Match: gi|657955076|ref|XP_008368998.1| (PREDICTED: WD repeat-containing protein 89 homolog [Malus domestica])

HSP 1 Score: 207.2 bits (526), Expect = 2.3e-50
Identity = 101/144 (70.14%), Postives = 117/144 (81.25%), Query Frame = 1


Query: 1   MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSN 60
           ME+ DM+VEE       +N   F+R  LKNSIQTNFGDDYVF I P  DWT+MAVSLS+N
Sbjct: 1   MEATDMEVEERP----PSNPDPFKRISLKNSIQTNFGDDYVFQIVPKDDWTAMAVSLSTN 60

Query: 61  VVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSI 120
            VK+YSPVTGQYYGEC+GH+ TINQI+FS PSTPH+LHSCSSDGTIR+WD RT QQVSS 
Sbjct: 61  AVKVYSPVTGQYYGECKGHSATINQIAFSGPSTPHILHSCSSDGTIRAWDTRTFQQVSSF 120

Query: 121 SAGPSQEIFSFAYGGSNMSLLAAG 145
            +G SQEIFSF++GGS  +LLAAG
Sbjct: 121 HSGSSQEIFSFSFGGSGNNLLAAG 140

[Close]

BLAST of Lsi03G010610 vs. NCBI nr
Match: gi|764535640|ref|XP_004290782.2| (PREDICTED: WD repeat-containing protein 89 homolog [Fragaria vesca subsp. vesca])

HSP 1 Score: 207.2 bits (526), Expect = 2.3e-50
Identity = 99/144 (68.75%), Postives = 119/144 (82.64%), Query Frame = 1


Query: 1   MESIDMDVEEHANADTSTNSSSFQRFGLKNSIQTNFGDDYVFHIAPNADWTSMAVSLSSN 60
           ME++D+D+E     ++S+N +SF+RFGLK SIQTNFGDDYVF I P  DWT+MAVSLS+N
Sbjct: 1   MEAMDLDMEPKPQPESSSNPNSFKRFGLKTSIQTNFGDDYVFQIVPKDDWTAMAVSLSTN 60

Query: 61  VVKLYSPVTGQYYGECRGHTGTINQISFSVPSTPHVLHSCSSDGTIRSWDVRTCQQVSSI 120
            VKLYSPVTGQYYGEC+GH+ TIN ISF+  S+PHVLHSCSSDGTIR WD RT QQVSS 
Sbjct: 61  AVKLYSPVTGQYYGECKGHSATINHISFADSSSPHVLHSCSSDGTIRLWDTRTFQQVSSF 120

Query: 121 SAGPSQEIFSFAYGGSNMSLLAAG 145
            +G   EIFSF++GGS+ +LLAAG
Sbjct: 121 PSGSGAEIFSFSFGGSSNNLLAAG 144

The following BLAST results are available for this feature:

BLAST of Lsi03G010610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G010610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWI9_CUCSA	5.7e-69	90.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001690 PE=4 SV=1	[more]
A0A059A7G2_EUCGR	3.5e-50	68.79	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03468 PE=4 SV=1	[more]
W9QN30_9ROSA	3.5e-50	72.03	WD repeat-containing protein 89-like protein OS=Morus notabilis GN=L484_001117 P...	[more]
A0A061DQG0_THECC	7.8e-50	69.93	Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_004633...	[more]
I1NB53_SOYBN	1.7e-49	71.83	Uncharacterized protein OS=Glycine max GN=GLYMA_19G210500 PE=4 SV=1	[more]

BLAST of Lsi03G010610 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47790.1	1.9e-47	64.14	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Lsi03G010610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108723\|ref\|XP_008454355.1\|	2.0e-70	92.36	PREDICTED: WD repeat-containing protein 89 homolog isoform X1 [Cucumis melo]	[more]
gi\|778689279\|ref\|XP_011652928.1\|	8.2e-69	90.97	PREDICTED: WD repeat-containing protein 89 homolog [Cucumis sativus]	[more]
gi\|645258806\|ref\|XP_008235057.1\|	1.1e-52	73.61	PREDICTED: WD repeat-containing protein 89 homolog [Prunus mume]	[more]
gi\|657955076\|ref\|XP_008368998.1\|	2.3e-50	70.14	PREDICTED: WD repeat-containing protein 89 homolog [Malus domestica]	[more]
gi\|764535640\|ref\|XP_004290782.2\|	2.3e-50	68.75	PREDICTED: WD repeat-containing protein 89 homolog [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017986	WD40_repeat_dom
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G010610.1	Lsi03G010610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 69..110 score: 1.
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 76..119 score: 10
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 37..144 score: 6.2
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 76..119 score: 10
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 31..145 score: 4.73
None	No IPR available	PANTHER	PTHR22889	UNCHARACTERIZED	coord: 22..148 score: 1.3
None	No IPR available	PANTHER	PTHR22889:SF0	WD REPEAT-CONTAINING PROTEIN 89	coord: 22..148 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G010610	Bottle gourd (USVL1VR-Ls)	lsilsiB091
Lsi03G010610	Cucumber (Gy14) v1	cgylsiB111
Lsi03G010610	Cucumber (Gy14) v1	cgylsiB352
Lsi03G010610	Cucurbita maxima (Rimu)	cmalsiB240
Lsi03G010610	Cucurbita maxima (Rimu)	cmalsiB350
Lsi03G010610	Cucurbita maxima (Rimu)	cmalsiB351
Lsi03G010610	Cucurbita maxima (Rimu)	cmalsiB422
Lsi03G010610	Cucurbita moschata (Rifu)	cmolsiB228
Lsi03G010610	Cucurbita moschata (Rifu)	cmolsiB339
Lsi03G010610	Cucurbita moschata (Rifu)	cmolsiB340
Lsi03G010610	Cucurbita moschata (Rifu)	cmolsiB409
Lsi03G010610	Cucurbita pepo (Zucchini)	cpelsiB116
Lsi03G010610	Cucurbita pepo (Zucchini)	cpelsiB452
Lsi03G010610	Cucurbita pepo (Zucchini)	cpelsiB500
Lsi03G010610	Wild cucumber (PI 183967)	cpilsiB274
Lsi03G010610	Wild cucumber (PI 183967)	cpilsiB530
Lsi03G010610	Cucumber (Chinese Long) v2	culsiB275
Lsi03G010610	Cucumber (Chinese Long) v2	culsiB516
Lsi03G010610	Melon (DHL92) v3.5.1	lsimeB240
Lsi03G010610	Melon (DHL92) v3.5.1	lsimeB269
Lsi03G010610	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G010610	Watermelon (Charleston Gray)	lsiwcgB246
Lsi03G010610	Watermelon (97103) v1	lsiwmB240
Lsi03G010610	Watermelon (97103) v1	lsiwmB280
Lsi03G010610	Cucumber (Gy14) v2	cgyblsiB257
Lsi03G010610	Melon (DHL92) v3.6.1	lsimedB282
Lsi03G010610	Silver-seed gourd	carlsiB064
Lsi03G010610	Silver-seed gourd	carlsiB099
Lsi03G010610	Silver-seed gourd	carlsiB699
Lsi03G010610	Silver-seed gourd	carlsiB748
Lsi03G010610	Cucumber (Chinese Long) v3	cuclsiB296
Lsi03G010610	Cucumber (Chinese Long) v3	cuclsiB550
Lsi03G010610	Watermelon (97103) v2	lsiwmbB218
Lsi03G010610	Watermelon (97103) v2	lsiwmbB239
Lsi03G010610	Wax gourd	lsiwgoB292
Lsi03G010610	Wax gourd	lsiwgoB315