Lsi03G010470 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G010470
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr03 : 20119188 .. 20128589 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACTTCATTCAGAGGTGGTTCACGTGGAAGACGTGGTGGTCGTGGAAGACGAGGAGGTGGAAGAAACTATGATAATAGAAATGGTGGAAATTCAGAAAATTCACAAGAAAGCTCTTCTTCATCTCGAGGTAGAGGAAGCAGAAGAGGAAGAGGTTTTGGCAGAAACCAAGAAGGAGGTCGAGGTAATTTGTCTCACATTCAATGTTTTAACTGCAAAAAGTATGGTCATTTTCAAGCAGATTGTTGGGCACCGAAAAATGGAGATGAAAATTCCACCATGATGCATAAAGAGGAGAAAAATGATGAAGGCGTTCTATTTCTTGCATGTAGCGTTCAAGACGACGTTGTAGAGTCTACATGGTATCTTGATAGTGGTTGTAGTAACCACATGACAAGAAATAGAAGTATATTTGTTACTTTGGATGAATCTCTCCAAAGTGAAGTAAAAACTGGTGATGACACTAGATTGCAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACGAAAAAAGGTATAAAACGAGTTACAGATGTGTTTTATGTTCTAGGTCTGAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAACGAGGTCAAAAAGTTTCATTTGAAGGTGATGTATGTACAATCAAAGATCAGACTGGCGTTCTTATTGCCAAGGTAAAAATGATTGCTAATAAGATGTTTCCTTTTAAATTTACATATGGTCAAATATCTTGCTTTAGCAGCATATTAAAGGATCCATCCTGGCTTTGGCATTTTCGATATGGTCACACACTACAACAAAAATGGACTATAATATCAGTCGAAAACAGACATTATTGGAGTACAGTATCGGTCAGGTGACCGACATCGAAGAACGTGTTATTAAAGATGTTTAATGTCGATTGACTTTAATGTCAGTTTTCGACCGACATTATTGATGTCTTTAATGTCAGTTTTCGACCGACATTATAGATGACCGACATTGAACACTAACACCCTCAATGCTGGTAGCCCGACCGACATTAAATGTATTTGCCCGTCATTAAATATTAATTTTCTGTGAAAGGCAATGTCTGTCATCATTGCTTTATTAAAACATTAAAAAAAAATTATTATTTGCATACATGACTGACTAACAAAATTAATATTTCTATACATATAATAAAAGTAATATGATATTTGTATACACCATAACTCAACTTTCATCAAGCACAACAATTAACTAATTCACTCCAATAGAAGTAATATGATTATCCGTCTCTCTACAAACTACATTCAATTTATAAAGATAAACAAAACTTTAAATACAAGACGAGTTATGATCCTTAATTATAAAATACAGAGCATAATGTAATAACTAAGTAACCTATCAACAAGTTACAACAATCAATATTACATAGAGTTCTAAAGTCTAAAGATCAAGAAAGCTGGTTGTCTGGAAGGTCCTATCACAAAACAATCTGCAAAAAAGATATGCTTACTTAAGTATATAAAATTGAGAATATTAAGAATATATCAAATAAAGCTCCAAATTAAAACTTACCTATCTACAAATAGAGCTCCAAAGGTTATAAACTAAATTACAACACTTAAAATAAAACTGAAAAGTCTAAACAAAACATTACCACCTAAATATCTTACCAAAAAGACTAGGGTCTTTACTGGAACGAGTTTGAAGAGTCCAAAACTAGTCTGAATCCACAAACAAGAGTTTACAAGTGTTAGGGACATTTCAAAAACACTCTAATTTAGTCCGAAAGAAATTTAGAGTAACATTAGCATCTAAATATATATTAGATAGAAAGAAAATACATATTAGATGGAAAGAAAATAAAAGGCTGAATATGCAATTTTTTTGCTTCTTCCCAAAAACATTTGACAGCTTCTTATCACCTTTCTTTTCAGATAAAGCACAAGAGGTAGATTTCTGCATTTCTATGTTTGCCTATCTAATACTTGAAGATGTTTCTCAAAACTATAGAGTCGAAGGGTAAATATCAAGATTATGTTGTTAACCTATTCTACAATAAATTTCTGGTAAGTGTGAAAATAGTACTTTTTGTAGTTTCTATAATGTTTGTTGTTGAAAATCCACAAGGAAAGTAAAGAAATTGCTTCATTAAAAAGGTCATACTCTAGTGAGAAGCATCCTGCACAGGACTACAACTAAGACGCGTCTCCTGACTCCTTCCCCGTTCGAGCGCAATCTAACTGTGTGGCTGGTTGGGCATCCTGCATATTTGAAGTGCTTATAAATATAATTACACAACCACAACCTCCATTCCACTAGTCTACCCACGTAAAAAGATTTGCTCAAAGTCATATAATTTTAGAAGAAGGTAAAGTATCAACAAAGCTCAAGTAATATGAACTAAGCAAACATTCTGATTGAATGGTCATATAAAAGGATTTGCTCAAGCTCATATAATTTCAGAAAAAGGTAAAGTATCCACAAAAAATTTTCATATAACTTGACTACCCAATTTTTATCAAGGAGATTTGGGGACTTTAGATCTCTATGAACAATGGTTCGATGACTTGTGTGCAAGTAGTTCATTCATTTGGCCTAAAAAAGAAAGATTTATTAAAAGGAACTAACCATGTTTTGTGGGAAAAATATTTATTTTCTAACTCCTTACCACATCAAGAGTCATTTTCAATTGTCTCCTTTCATCTACTTGAGAGTTGGCCAATGGAGTAACCTATCCAAAAAAAATGACAAAATGACAAATTCATCAATAAATGAAAAAATGTCTATTCTTCACTGCTTTACCATAACTTACATGTTTACATCCAAACAACCGAACAAACAAAAAAAAAGGCTTGAAATTACCTATATTTGAAAAAAAAAATCACAAAAGTACATAAATGCTTAAAAGCATTTCAAAGACTCACTTGAAAATTAGTCTTTAGATCAAACGTGTTAGCAACAAGATAATTTCTATTCCAATCATCTAGCTTATTCCAATCATTTTAACTCTTTCTTAACCCATACTTTAGGACACTTGAAGTCCAATCCAAGTAAGGAACTACCCTAAGACATTGAATACAATATAATTTGAGAATTTCAAGCCCAAAAGTGGGGTTAACTTAGCTACAAACTAAAAGAAATAGCAACTATATATAAAAATAATAATAGTAAATTGACAGTTGAGCAGTTTTTTTACAGCAAGTTCATTGCTAAGCTATTTTTCATGTCTTTTGCTGCTGTTTTAAGTTATTTTCAGCCCAAAACAGTAGATATAAAAACAAAAAACAACAGTATAAAATTGACAGCACTGCAGATTTTTTACAGCAACTTCATTGCGCTGCTGTTTCTTCATATTTTTGTTGCTATTTTAAGTTATTTCCTTCTTTTCACAGTCACCCCTCAATTTACAGTTGTAGATTAAGAAAGAGAGTTTACCAAAAATGAAGTCCACTGCTTGTTCTTTCTCAAATTTTTCCTTCAAGGCTGTTGTATCTCACCCAACAGTGAAATCTGCGACAACAGTACTTCCAAAAAAGAACTCGATTGTCTCATATACCAAAAAAAATTTCCGTATAGAGAACAGATATAAGTTAAATTGGGAAGTGATTGAACCTTAGATAGACCATTATAGTTGAAAAAGGAAGTGTCGAAATGGTTCAAGCCACCTAGTCCTTGGAAAATTTAAAATGAAACTACAAACAAAAGAGTAAGATATTCCACCACTAGTGAAAGTGAAAAATACTTTTATCATCCTCAAACAACCCAAAGCATTGAAAAATACTTTTGCAATCTTAACATTGGAGTGCTTCCTGATATATAAGAGTACCTGTTCGATTGAGCTAAGGGCTTCAACATCTCTCCACTTCTGCAAAGAATAACATTACAAGAGGTCAAACAAAAAAAAAACTTACTTCAATCTTCTTATAACATTCATATTCATTAAACTCCTTCCAATCACTAATAAACATCACATACAGTTGAAAACATCTCATAAAAAAATCGAAAAACAAAACTCAGTGAAAGAACAACAACTAGCCTATGCCAAAGCAAAAATAATCACTAGACATTAAACATTTCCGACAATCGAATTCACTTGTTTAAACAAAACATGATAAAATCTTCGCCGCAACAAATAAAATGCAAAATAAAAAAGATGATAAATTTCGATTAGTTCAACTCTGATAAGCTCCTAACAGATTCTTGGTCCACATGATGCAATGTTGGAAAGGAACTTATAAGTTTCTAAGAACAATCTTGCTTCGTGAGTAACACCTATTACCAATAACATCACTTCAATGCCACTGACAAAAGAATATAAAACTCCAAAATTTAACCAGATTGCTATAGATATCCATAAACATATCATAAGTCACTATGGGAGTATATTTTGTTTGCTTAAAGAAGACATATAGCTGAAACAAAAAGTTTGAAAATTAGCCACATGGATTACTCTGGAGTCAAATTAATTTAATAAACTATTCTTTGTGAATTATTCCACCACTAGTGAAAGTGAAATCAAATTAATTTCTGAACAAAAAATAGCATTTGAAAGTAGAGGAAGACCATACATCGAAAGTTATTGGGTGAGGTTCAATAGTGCAAGTTATTGGGTGAATCTTCACAAAGAGGTAGAACTTTAAGCCTTCGTTACCTGTGGAACAACAAAAATTCAAGAACAATCTACAGTATCAGAATCCACAAAAAATTTGAACCTCAATTTTTTAGGCTTGGACAGAACCACTAGTTTTCTTCAGAAATCAGAAACAAACGTTAGAAAAGGATCTTTATCAATAGGCTTGGACGACGACGATGCTGGTGAACGGATGAAGCTCGGGGACTCACGATGACGGCGTTCATGGATGGACGAAGCATAGATCTTGACGGTGGCGCTTGTGGACAGATCAAGCACAGATCTGCAATGACCTAGGTGAGATTGATGGAGATGCACAAACTTCGGCGTGTCGACGGCGGTGGGATCTGGCGGATTTGCAGAAACCTAAGATCGGCATTGTAGATCTAGCGGCTAGAGGACGAAGTTGACGGGTGAACTTAGAGATCGGCGTAGCTACAGAGACCTGATGGAGCTGCACGGACTGGGTGACCGACGGCGCAGATCTGGTCGTGATCGACGGAGCGAGCGTCGAGTGAGATTGGCCGACGAGATTGACGAAGTTGGGTCTGATTTGCGTATGAAAACAGAGAGAGAGCGAGTGGGTCTAATGGTTTGCATATGAAAATAGAGAGAGAAGAGAGAGAAAGTTGGGTTCTGGTGGAAAACAAAGAGAGTGAAGGAGATAATAAGTTTTGGAAAAAAAATCTTAATAGATAGGGATGGAAAAAAATCTTAATAATAAGTTTTGGAAAAAAAATAATTATCCCAATTCTTTTAACAAATTAATTTCAGAATCCCCAAATCTCTCATTAATTAAACTAATCAATTAACTTTTCAAATTATCTTAATTTTGATTTCATTAATCTAAGATAATGAAACCAAAATTAAAGGAATACTAAAATCCATTAATCTAAGATAATGAATTTAAAATTAACTAAAAATTCAGGATGTCACAAAAATAAAGGGCTAAAAGATTTATGATAGAAATGTAATATTAGTTTCCAAAATCTTGAAATTAAAATCGAGCTTCAGATCCCCAATGAAAGGGGAAAATAGAGAAAAAAAAATATTTTTGCTAAAAATATATTATATAACAAGAGGAAGGAAAAGTAGGAGAGAAATGGAGAAAAAATAGGGTTTGATTATTTTTTATTTTTTAATTGATAATTGGGGAGAGAAATGGGGGAAAAAATAAGGTTTGATTATTTTTTATTTTTTAATTGATAATTGGGGAAGGAGGGAAACAAAATTTGAGAGGGGAATGAAAATGGAGTAGGAGGGAAACAAAAAATGAAGATTAAAAAAGAAAATTAAATTTGAGAATTTTTTTTAGAGGATCTTTAATGTCAGTCGAAAACCGACATTAAAGATCTGTTTTAATGTATCTTTAATGTCAGTCTAAAACCGACATTAAAGATCCGCTTTTTTTTTCACTTGGCCTGACATTAAAGATCCATGTCCAATTTTTTGGACCGACACTGAAGACCTAATTTGTTGTAGTGTCACTTGAATTTCGGATCGCTATCTCATTTGTGCAAAAATCATATGGTGAGGGGCATACAAAATATCAACCATGAGACAGATATTTGTGAAGTGTGTATACTTGCAAAACATCATCGAGATTTATTTCCAACTGGGAAAGCTTGGAGAGCCTCCAGACCTCTTGAGTTGATTCATACAGATTTGTGTGGTCCCATGCGTACAATATCAAATGGACGTAATCGATATTTCATAACCTTCATTGATGATTTCAGCAGAAAGTTGTGGATTTATCTTTTGAAAGAAAAATCTGAAGCATTTGAATGTTTTAAATCTTTCAAAGTTTTAGTTGGGAATCAAAGTGGTCATAAGATAAAAACTTTGAGATCTGATCGTGGTGGAGAATATATAGTTTTTGATAAAAATTTTAAGGAGCAAGGAATTCATCATCAAATGACAGCTCGAATGACTCCACAACAAAATGGAGTTGCAGAGAGAAAGAATAGAACGATCATGGAGATAGCGAGAAGTATGCTAAAAGCAAAAAAAGATGTCAGATGAGTTTTGGGGAGATTCTGTTGCATGTACTGCTTATATTTTGAATCAAGCTCCAACAAAGAGTGTTCCAGGTATGACTCCTTATGAAGCATGGTGTGGTGAGAAGCCATGTGTTAGTCACTTGAGAGCTTTTGGGAGTATAGCTTATTCTCACATACCAAATCAGCTAAGAGGCAAGCTTGATGATAAATCTGAAAAATGTATTATGGTAGGCTATAGTGAAAATTCTAAAGCTTATCGGTTGTATAATCCTGTGTCAAAAAAGATTATTATCAATAGGGATGTGATTTTCAATGAAGATGAATCCTAGAGCTGGGATGCTGCTGGTGAAGCTGAAAGTCCATTTCATGTTAGCATGGATGAGAATGAAGATGCTCAAGCCTCAGAGCAAGTAGAAATTCAAGCAATGGCATCATCTTCGTCTGCAGTGCCATCTTCCACAAGTAATGATGAAATCTCACCAAGGAGAATGAGGAATATTCAAGATATTTATAATTCTACTAGCAGAATTGATGATGATCATGTTGCTAATTTTGTATTATTTGCTGGTGTTGATCCTATAACTTTTGATGAGGCCATCCAAGATGAGAAATGGAAGATTGCAATGGATCAAGAAATTGATGCGATAAAAAGAAATGAAACATGGGAGTTGATGGAGCTTCCTGTAAACAAAAAGGCTCTTTGAGTAAAATGGGTGTACAGAACAAAGTTGAAGTCAAATGGTGAAGTTGAAAAATACAAGGCAAGACTTGTTGTAAAAGGTTACAAGCAAGAATATGGTGTAGATTATGAAGAAATATTTGCTCCTGTGACGAGAATGGAAACCATCCGATTGATTTTATGTTTAGCTGCTCAAAATAGATGGAATGTTTATCAAATGGATGTAAAATCTGCTTTTTTGAATGGATACTTGAAGGAAGAGATATTTGTTGAACAACCTTTGAGTTATATGAAACAAGGAGAAAAAGAAAAGGTGTACAAGTTGAAGAAGGCCTTGTATGGATTGAAGCAAGCTCCACGAGATTGGTACAGCCGCATTGACAATTTCTTTCTGAAGACGGGATTTCAAAGATGTCCATATGAGCATGCACTCTATGTCAAAGAAGATAAGTATGACAAATTTCTTATCGTTTCACTTTACATTGATGATTTACTTTTCACTGGAAATGATAAATTGTTGTGTGATGATTTTAAGAATTCCATGAAAAAGGAATTTGAAATGAGTGATATGGGTCTCATCCACTATTTTCTCGGAATTGAAGTTGATCAAAAAGATGGAGAGATTGTCATCTCACAACAAAAGTATGCTAATGATTTGTTGAAAAAATTCCGGATGGAAAATGCTTTTCCTTGCAACACTCTCATGGATGCAAATTTGAAATTGAGCAAGGATGATATTGGAGAAGAAGTTTATCCAAGTTTGTATCGAAGTTTAGTTGGAAGCTTGATGTACTTGACGGCAACAAGACCTGATATTTCATTTGTTGTAAGTATGTTAAGTAGATTCATGACAAGCCCGAAAAGAAGTCACTGGGAAGCAGGTAAAAGAGTTCTTCGTTACATTCGTGGAACCATTAATTTTGGAATTTATTACGAGAAAGTTCCAGAATCAGTATTATTTGGCTTTTGTGATAGTGATTGGGGTGGTAATGTAGATGATAACAAAAGTACATCGGGTTATGTTTTTAGCATCGGTTCAGGTGTTTTTTCATGGTGTTCAAAGAAGCAGCCTGTTGTTGCTCTTTCTACCACCGAAGCAGAATATATCTCTTTATCTACAGCTGGATGTCAAGCTTTATGGCTTAGATGGATGTTGAAGGAATTGAAGTGTACTCAAAGAAGTGAGACTGTTTTATTTTGTGATAATGGATCTGCTATAGCATTATCAAAGAATCCAGTTTTTCATGGAAGAAGCAAGCATATTAGAATCAAGTATCATTTTATCAGAGACTTGGTTAATGATGGAGAAGTGATGGTGAAATATTGCAAGACTCAAGATCAAGTGGCAGATATTTTTACATGTTTGTAAAGTTCAGAGAAAAACTTGGAGTTGCTCAAGTCTAGATTAAAGGAGGATGTTGAAATTAAATTAATCTAGACATCTTAATACATGAATTACATTATTACATACATGAATAGTTGAGATTCAAGGAATAGTTAGATACATGAATTACCAAATACATTGATGAATGTTCATGTATTGGTGAAAAGTCACATGTATTGATATTTATTGTTGATGTCTTTTGATTTACTCTCCTACTAGTATAAATATGTGTAGGATTTTTCATTTGTAAGAAGTAAGAAAGAAAAGAAAGTTTATAAGAAATATTCAAGTTCAATTCTCCTAAATTGTGTGAGTAAGAGAACAATCTTCTTCTCTTGTCTCTTGATTTATATTGTGTGAGTTTACTACGTTTCCAACACAATAAGTTGAACACGAGTTGGATTCTCTACTTTTTTTAGAAACCATAGCTTTAAGAGTCGCTATCTTCGAACCTTCAAACACCAATCTCTTATTACAAACTTTTTCATTCGTTTCTGAATCCTCCTGGCCGCCTCCAGATTGGCCATCGCTTGTGTCCGATTCCAGTCGAAAAAAGCTGGCAGCATTGAATTGAGGATTCACCGTCAGCGAATCGCCGCCATTGAAGCTACGAGCAATGGAAACCCAATCTCTCATGAAGTTGGTTATGGAGGTTGTATCCGCAAGTTTGTGATGGGCAGAGGCACAAATCACTTCTCCTCCACATTCAAATTTTGTCAACTGAATAAACAACAAAGGATGCAATAA

mRNA sequence

ATGCAAACTTCATTCAGAGGTGGTTCACGTGGAAGACGTGGTGGTCGTGGAAGACGAGGAGGTGGAAGAAACTATGATAATAGAAATGGTGGAAATTCAGAAAATTCACAAGAAAGCTCTTCTTCATCTCGAGGTAGAGGAAGCAGAAGAGGAAGAGGTTTTGGCAGAAACCAAGAAGGAGGTCGAGGTAATTTGTCTCACATTCAATGTTTTAACTGCAAAAAGTATGGTCATTTTCAAGCAGATTGTTGGGCACCGAAAAATGGAGATGAAAATTCCACCATGATGCATAAAGAGGAGAAAAATGATGAAGGCGTTCTATTTCTTGCATGTAGCGTTCAAGACGACGTTGTAGAGTCTACATGGTATCTTGATAGTGGTTGTAGTAACCACATGACAAGAAATAGAAGTATATTTGTTACTTTGGATGAATCTCTCCAAAGTGAAGTAAAAACTGGTGATGACACTAGATTGCAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACGAAAAAAGGTATAAAACGAGTTACAGATGTGTTTTATGTTCTAGGTCTGAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAACGAGGTCAAAAAGTTTCATTTGAAGGTGATGTATGTACAATCAAAGATCAGACTGGCGTTCTTATTGCCAAGTCGAAAAAAGCTGGCAGCATTGAATTGAGGATTCACCGTCAGCGAATCGCCGCCATTGAAGCTACGAGCAATGGAAACCCAATCTCTCATGAAGTTGGTTATGGAGGTTGTATCCGCAAGTTTGTGATGGGCAGAGGCACAAATCACTTCTCCTCCACATTCAAATTTTGTCAACTGAATAAACAACAAAGGATGCAATAA

Coding sequence (CDS)

ATGCAAACTTCATTCAGAGGTGGTTCACGTGGAAGACGTGGTGGTCGTGGAAGACGAGGAGGTGGAAGAAACTATGATAATAGAAATGGTGGAAATTCAGAAAATTCACAAGAAAGCTCTTCTTCATCTCGAGGTAGAGGAAGCAGAAGAGGAAGAGGTTTTGGCAGAAACCAAGAAGGAGGTCGAGGTAATTTGTCTCACATTCAATGTTTTAACTGCAAAAAGTATGGTCATTTTCAAGCAGATTGTTGGGCACCGAAAAATGGAGATGAAAATTCCACCATGATGCATAAAGAGGAGAAAAATGATGAAGGCGTTCTATTTCTTGCATGTAGCGTTCAAGACGACGTTGTAGAGTCTACATGGTATCTTGATAGTGGTTGTAGTAACCACATGACAAGAAATAGAAGTATATTTGTTACTTTGGATGAATCTCTCCAAAGTGAAGTAAAAACTGGTGATGACACTAGATTGCAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACGAAAAAAGGTATAAAACGAGTTACAGATGTGTTTTATGTTCTAGGTCTGAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAACGAGGTCAAAAAGTTTCATTTGAAGGTGATGTATGTACAATCAAAGATCAGACTGGCGTTCTTATTGCCAAGTCGAAAAAAGCTGGCAGCATTGAATTGAGGATTCACCGTCAGCGAATCGCCGCCATTGAAGCTACGAGCAATGGAAACCCAATCTCTCATGAAGTTGGTTATGGAGGTTGTATCCGCAAGTTTGTGATGGGCAGAGGCACAAATCACTTCTCCTCCACATTCAAATTTTGTCAACTGAATAAACAACAAAGGATGCAATAA

Protein sequence

MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTMMHKEEKNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQRGQKVSFEGDVCTIKDQTGVLIAKSKKAGSIELRIHRQRIAAIEATSNGNPISHEVGYGGCIRKFVMGRGTNHFSSTFKFCQLNKQQRMQ

Homology

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BLAST of Lsi03G010470 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.5e-10
Identity = 62/209 (29.67%), Postives = 100/209 (47.85%), Query Frame = 1


Query: 36  SQESSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAPKNG------ 95
           S + SS++ GR   RG+   R++   R       C+NC + GHF+ DC  P+ G      
Sbjct: 204 SYQRSSNNYGRSGARGKSKNRSKSRVRN------CYNCNQPGHFKRDCPNPRKGKGETSG 263

Query: 96  ---DENSTMMHKEEKNDEGVLFLACSVQDDVV-----ESTWYLDSGCSNHMTRNRSIFVT 155
              D+N+  M   + ND  VLF+  + +++ +     ES W +D+  S+H T  R +F  
Sbjct: 264 QKNDDNTAAM--VQNNDNVVLFI--NEEEECMHLSGPESEWVVDTAASHHATPVRDLFCR 323

Query: 156 LDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRV-TDVFYVLGLKHNLLSIGQLLQRG 215
                   VK G+ +  ++ G GDI +KT  G   V  DV +V  L+ NL+S G  L R 
Sbjct: 324 YVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLIS-GIALDRD 383

Query: 216 QKVSFEGDVCTIKDQTGVLIAKSKKAGSI 230
              S+  +      +  ++IAK    G++
Sbjct: 384 GYESYFANQKWRLTKGSLVIAKGVARGTL 401

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BLAST of Lsi03G010470 vs. TrEMBL
Match: A6YTD9_CUCME (Integrase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 9.9e-74
Identity = 162/226 (71.68%), Postives = 174/226 (76.99%), Query Frame = 1


Query: 1   MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEG 60
           MQTSFRGGSRGRRGG GRRGGGRNYDNR+G NSENSQESSS SRGRGS R RGFGRNQ G
Sbjct: 216 MQTSFRGGSRGRRGGHGRRGGGRNYDNRSGANSENSQESSSLSRGRGSGRRRGFGRNQGG 275

Query: 61  GRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKEE-KNDEGVLFLACSVQDDVV 120
           GRGN S IQCFNC+KYGHFQADCWA KNG  N+TM MHKE+ KNDEG+LFLACSVQD+VV
Sbjct: 276 GRGNFSQIQCFNCRKYGHFQADCWALKNGVGNTTMNMHKEQKKNDEGILFLACSVQDNVV 335

Query: 121 ESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVT 180
           + T                             + GD+TRLQVKGQGDILVKTKK  KRVT
Sbjct: 336 KPT----------------------------CEDGDNTRLQVKGQGDILVKTKKRTKRVT 395

Query: 181 DVFYVLGLKHNLLSIGQLLQRGQKVSFEGDVCTIKDQTGVLIAKSK 225
           +VFYV GLKHNLLSIGQLLQRG KVSFEGD+C IKDQ  VLI+K K
Sbjct: 396 NVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIKDQADVLISKVK 413

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BLAST of Lsi03G010470 vs. TrEMBL
Match: A0A068B703_GOSBA (Polyprotein OS=Gossypium barbadense PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 88/222 (39.64%), Postives = 138/222 (62.16%), Query Frame = 1


Query: 5   FRGGSRG-RRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEGGRG 64
           +RGG RG  RGGRG RG G    N++ G  + +++  +S+RGRGSR GRG GR QE    
Sbjct: 241 YRGGYRGGNRGGRGSRGRG----NQSYGRYQENKDYQTSNRGRGSR-GRGRGRFQE---- 300

Query: 65  NLSHIQCFNCKKYGHFQADCWAPKNGDENSTMMHKEEKND--EGVLFLACSVQDDVVEST 124
           N S +QC+NC KYGHF  +C +    DE + +    E N+  E  +FL     +D   S 
Sbjct: 301 NKSQVQCYNCNKYGHFSYECRSTHKVDERNHVAVAAEGNEKVESSVFLTYGENEDRKRSV 360

Query: 125 WYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKR-VTDV 184
           WYLD+G SNHM   + +F  LDE++  ++  GD++  ++KG+G +++  + G K+ ++DV
Sbjct: 361 WYLDNGASNHMCGRKELFTELDETVHGQITFGDNSHAEIKGKGKVVITQRNGEKKYISDV 420

Query: 185 FYVLGLKHNLLSIGQLLQRGQKVSFEGDVCTIKDQTGVLIAK 223
           +YV  LK NL+S+GQLL++G +V  +     I++++G L+ +
Sbjct: 421 YYVPALKSNLISLGQLLEKGYEVHMKDRSLAIRNKSGELVVR 453

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BLAST of Lsi03G010470 vs. TrEMBL
Match: A0A151R7G0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_040164 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.0e-31
Identity = 75/186 (40.32%), Postives = 119/186 (63.98%), Query Frame = 1


Query: 39  SSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAP-KNGDENSTMMH 98
           ++++ RG  S RGRG  R     R + S I+C+NC K+GH+ ++C AP KN  E      
Sbjct: 196 NNNNQRGESSNRGRG--RGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYA 255

Query: 99  KEEKNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTR 158
           +E   ++G L LA   QD   ++ WYLDSG SNHM   RS+FV LDES++  V  GD+++
Sbjct: 256 EERCQEDGTLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESK 315

Query: 159 LQVKGQGDILVKTKKGIKR-VTDVFYVLGLKHNLLSIGQLLQRGQKVSFEGDVCTIKDQT 218
           + V+G+G++L++ K G  + +++V+YV  +K N+LS+GQLL++G  +  + +  +I+D T
Sbjct: 316 VAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNT 375

Query: 219 GVLIAK 223
              IAK
Sbjct: 376 SRFIAK 379

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BLAST of Lsi03G010470 vs. TrEMBL
Match: A0A151TGQ2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_012506 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.0e-31
Identity = 75/186 (40.32%), Postives = 119/186 (63.98%), Query Frame = 1


Query: 39  SSSSSRGRGSRRGRGFGRNQEGGRGNLSHIQCFNCKKYGHFQADCWAP-KNGDENSTMMH 98
           ++++ RG  S RGRG  R     R + S I+C+NC K+GH+ ++C AP KN  E      
Sbjct: 185 NNNNQRGESSNRGRG--RGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYA 244

Query: 99  KEEKNDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTR 158
           +E   ++G L LA   QD   ++ WYLDSG SNHM   RS+FV LDES++  V  GD+++
Sbjct: 245 EERCQEDGTLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESK 304

Query: 159 LQVKGQGDILVKTKKGIKR-VTDVFYVLGLKHNLLSIGQLLQRGQKVSFEGDVCTIKDQT 218
           + V+G+G++L++ K G  + +++V+YV  +K N+LS+GQLL++G  +  + +  +I+D T
Sbjct: 305 VAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNT 364

Query: 219 GVLIAK 223
              IAK
Sbjct: 365 SRFIAK 368

[Close]

BLAST of Lsi03G010470 vs. TrEMBL
Match: A0A151RW17_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_031647 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.0e-31
Identity = 83/221 (37.56%), Postives = 132/221 (59.73%), Query Frame = 1


Query: 28  RNGGNSENSQ-------ESSSSSRGRGSRRGRG--FGRNQEGGRGN-LSHIQCFNCKKYG 87
           RNG  S + Q       + + S+RG+ ++RGRG  F     GG G+  SH+QC+NC KYG
Sbjct: 208 RNGDKSGSEQALLAKQNKKAESNRGKFNKRGRGRGFRGGYNGGSGSDKSHVQCYNCNKYG 267

Query: 88  HFQADCWAPKNG---DENSTMMHKEEKNDEGVLFLACSVQDD-VVESTWYLDSGCSNHMT 147
           H+ +DCW+ +     +E   +  KEE  DE +L +     +   +  +WYLD+GCSNHM+
Sbjct: 268 HYASDCWSKEGSNSKEEEVNVAQKEESEDEVLLMVTTEKPEKKTLSESWYLDTGCSNHMS 327

Query: 148 RNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRV-TDVFYVLGLKHNLLS 207
             +  F+ L+E ++S+VK  D++ ++ +G+G IL++ K G   V +DV YV  +KHNLLS
Sbjct: 328 FQKKWFINLNEKIKSKVKFADNSTVECEGKGKILIRRKDGKTTVISDVLYVPAMKHNLLS 387

Query: 208 IGQLLQRGQKVSFEGDVCTIKDQTGVLIAKSKKAGSIELRI 234
           IGQLLQ+G  + ++  +  I D+ G  I K+  + +   R+
Sbjct: 388 IGQLLQKGYLIDWKDQMLRILDKNGSPILKAPLSNNRTFRV 428

[Close]

BLAST of Lsi03G010470 vs. TAIR10
Match: AT3G20980.1 (AT3G20980.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1


Query: 119 ESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVK--TGDD---TRLQVKGQGDILVKTKKG 178
           E+ W + S  SNHMT +   F TLD S + +VK  +GD    T   V+G GD+   T +G
Sbjct: 266 ENIWLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEG 325

Query: 179 IKRVTDVFYVLGLKHNLLSIGQLLQRGQKVSFEGDV-CTIKDQT 217
            K + +V YV G++ N LS+ QL + G +VS E    C + D+T
Sbjct: 326 NKTIKNVLYVPGIEGNALSVSQLKRNGFEVSMERRTGCFVWDRT 369

[Close]

BLAST of Lsi03G010470 vs. TAIR10
Match: AT3G21000.1 (AT3G21000.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-10
Identity = 46/144 (31.94%), Postives = 70/144 (48.61%), Query Frame = 1


Query: 70  CFNCKKYGHFQADCWAPKNGDENSTMMHKEEKNDEGVLF--------LACSVQDDVVEST 129
           C  C K  H Q DC    + D       KEEK DE V+         L     DD +   
Sbjct: 230 CGLCYKNNHNQEDCKFRIHTD-------KEEKEDEIVVDYRLETVPNLGAKTYDDDI--- 289

Query: 130 WYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKR-VTDV 189
           W +      +MT     F TLD + ++ V T D T L V+G+GD+ ++ K+G K+ + +V
Sbjct: 290 WIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNV 349

Query: 190 FYVLGLKHNLLSIGQLLQRGQKVS 205
            +V GL  N+LS G+++ +   +S
Sbjct: 350 IFVPGLNRNVLSFGKMVSKRYSIS 363

[Close]

BLAST of Lsi03G010470 vs. NCBI nr
Match: gi|659099180|ref|XP_008450471.1| (PREDICTED: uncharacterized protein LOC103492064 [Cucumis melo])

HSP 1 Score: 348.6 bits (893), Expect = 1.0e-92
Identity = 186/226 (82.30%), Postives = 197/226 (87.17%), Query Frame = 1


Query: 1   MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEG 60
           MQTSFRGGSRGRRGG GRRG GRNYDNR+G NSENSQE SS S      RGRGFGRNQ G
Sbjct: 216 MQTSFRGGSRGRRGGHGRRGDGRNYDNRSGANSENSQEISSLS------RGRGFGRNQGG 275

Query: 61  GRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKEE-KNDEGVLFLACSVQDDVV 120
           GRGN S IQCF C+KYGHFQADCWA KNG  N+TM MHKE+ KNDEG+LFLACSVQD+VV
Sbjct: 276 GRGNFSQIQCFKCRKYGHFQADCWALKNGVGNTTMNMHKEQKKNDEGILFLACSVQDNVV 335

Query: 121 ESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVT 180
           E TWYLDSGCSNHMT NR+IFVTLDES QSEVKTGD+TRLQVKGQGDILVKTKKG KRVT
Sbjct: 336 EPTWYLDSGCSNHMTGNRNIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVT 395

Query: 181 DVFYVLGLKHNLLSIGQLLQRGQKVSFEGDVCTIKDQTGVLIAKSK 225
           +VFYV GLKHNLLSIGQLLQ+G KVSFEGD+C IKDQ GVLIAK K
Sbjct: 396 NVFYVPGLKHNLLSIGQLLQQGLKVSFEGDICAIKDQAGVLIAKVK 435

[Close]

BLAST of Lsi03G010470 vs. NCBI nr
Match: gi|659116536|ref|XP_008458119.1| (PREDICTED: uncharacterized protein LOC103497649 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.9e-78
Identity = 168/224 (75.00%), Postives = 177/224 (79.02%), Query Frame = 1


Query: 1   MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEG 60
           MQTS RG S GRRGG G RGGGRNYDNR+G NSENSQESSS SRGR SRRGRGFGRNQ G
Sbjct: 24  MQTSLRGSSHGRRGGHGIRGGGRNYDNRSGANSENSQESSSLSRGRESRRGRGFGRNQGG 83

Query: 61  GRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKEE-KNDEGVLFLACSVQDDVV 120
           GRGN SHIQCFNC+KYGHFQ DCWA KNGD N+TM MHKE+ KNDEG+LFLACSVQDDVV
Sbjct: 84  GRGNFSHIQCFNCRKYGHFQGDCWALKNGDGNTTMNMHKEQKKNDEGILFLACSVQDDVV 143

Query: 121 ESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVT 180
           EST                           EVKTGD+TRLQVKGQGD+LVKTKKG KRVT
Sbjct: 144 EST--------------------------CEVKTGDNTRLQVKGQGDMLVKTKKGTKRVT 203

Query: 181 DVFYVLGLKHNLLSIGQLLQRGQKVSFEGDVCTIKDQTGVLIAK 223
           +VFYV GLKHNLLSIGQLLQRG KVSFEGD+C IKDQ GVLIAK
Sbjct: 204 NVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIKDQVGVLIAK 221

[Close]

BLAST of Lsi03G010470 vs. NCBI nr
Match: gi|150036244|gb|ABR67407.1| (integrase [Cucumis melo subsp. melo])

HSP 1 Score: 285.0 bits (728), Expect = 1.4e-73
Identity = 162/226 (71.68%), Postives = 174/226 (76.99%), Query Frame = 1


Query: 1   MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEG 60
           MQTSFRGGSRGRRGG GRRGGGRNYDNR+G NSENSQESSS SRGRGS R RGFGRNQ G
Sbjct: 216 MQTSFRGGSRGRRGGHGRRGGGRNYDNRSGANSENSQESSSLSRGRGSGRRRGFGRNQGG 275

Query: 61  GRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKEE-KNDEGVLFLACSVQDDVV 120
           GRGN S IQCFNC+KYGHFQADCWA KNG  N+TM MHKE+ KNDEG+LFLACSVQD+VV
Sbjct: 276 GRGNFSQIQCFNCRKYGHFQADCWALKNGVGNTTMNMHKEQKKNDEGILFLACSVQDNVV 335

Query: 121 ESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGDDTRLQVKGQGDILVKTKKGIKRVT 180
           + T                             + GD+TRLQVKGQGDILVKTKK  KRVT
Sbjct: 336 KPT----------------------------CEDGDNTRLQVKGQGDILVKTKKRTKRVT 395

Query: 181 DVFYVLGLKHNLLSIGQLLQRGQKVSFEGDVCTIKDQTGVLIAKSK 225
           +VFYV GLKHNLLSIGQLLQRG KVSFEGD+C IKDQ  VLI+K K
Sbjct: 396 NVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIKDQADVLISKVK 413

[Close]

BLAST of Lsi03G010470 vs. NCBI nr
Match: gi|659125412|ref|XP_008462674.1| (PREDICTED: uncharacterized protein LOC103500978 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 109/128 (85.16%), Postives = 116/128 (90.62%), Query Frame = 1


Query: 96  MHKEEK-NDEGVLFLACSVQDDVVESTWYLDSGCSNHMTRNRSIFVTLDESLQSEVKTGD 155
           MHKE+K NDEG+LFLACSVQD+V+E TWYLDSGCSNHMT NRSIFVTLDES QSEVKTGD
Sbjct: 3   MHKEQKKNDEGILFLACSVQDNVLEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGD 62

Query: 156 DTRLQVKGQGDILVKTKKGIKRVTDVFYVLGLKHNLLSIGQLLQRGQKVSFEGDVCTIKD 215
           +T LQVKGQ DILVKTKKG KRVT+VFYV GLKHNLLSIGQLLQRG KVSFEGD+C IKD
Sbjct: 63  NTILQVKGQCDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIKD 122

Query: 216 QTGVLIAK 223
           Q  VLIAK
Sbjct: 123 QPSVLIAK 130

[Close]

BLAST of Lsi03G010470 vs. NCBI nr
Match: gi|659125396|ref|XP_008462665.1| (PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 1.2e-40
Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = 1


Query: 1   MQTSFRGGSRGRRGGRGRRGGGRNYDNRNGGNSENSQESSSSSRGRGSRRGRGFGRNQEG 60
           MQTSFRGGSR RRGG GRRGGGRNYDNR+G NSENSQESSS SRGRGS RGRGFGRNQ G
Sbjct: 177 MQTSFRGGSRERRGGHGRRGGGRNYDNRSGANSENSQESSSLSRGRGSGRGRGFGRNQGG 236

Query: 61  GRGNLSHIQCFNCKKYGHFQADCWAPKNGDENSTM-MHKEE-KNDEGVLFLACSVQDDVV 120
           GRGN S IQCFN +KY HFQADCWA KNG  N+TM MHKE+ KN EG+LFLACSVQD+VV
Sbjct: 237 GRGNFSQIQCFNWRKYDHFQADCWALKNGVGNTTMNMHKEQKKNYEGILFLACSVQDNVV 296

The following BLAST results are available for this feature:

BLAST of Lsi03G010470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	6.5e-10	29.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Lsi03G010470 vs. TrEMBL


Match Name	E-value	Identity	Description
A6YTD9_CUCME	9.9e-74	71.68	Integrase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A068B703_GOSBA	1.2e-31	39.64	Polyprotein OS=Gossypium barbadense PE=4 SV=1	[more]
A0A151R7G0_CAJCA	8.0e-31	40.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151TGQ2_CAJCA	8.0e-31	40.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151RW17_CAJCA	8.0e-31	37.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of Lsi03G010470 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20980.1	1.1e-10	39.42	Gag-Pol-related retrotransposon family protein	[more]
AT3G21000.1	2.4e-10	31.94	Gag-Pol-related retrotransposon family protein	[more]

BLAST of Lsi03G010470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099180\|ref\|XP_008450471.1\|	1.0e-92	82.30	PREDICTED: uncharacterized protein LOC103492064 [Cucumis melo]	[more]
gi\|659116536\|ref\|XP_008458119.1\|	1.9e-78	75.00	PREDICTED: uncharacterized protein LOC103497649 [Cucumis melo]	[more]
gi\|150036244\|gb\|ABR67407.1\|	1.4e-73	71.68	integrase [Cucumis melo subsp. melo]	[more]
gi\|659125412\|ref\|XP_008462674.1\|	1.1e-52	85.16	PREDICTED: uncharacterized protein LOC103500978 [Cucumis melo]	[more]
gi\|659125396\|ref\|XP_008462665.1\|	1.2e-40	81.82	PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G010470.1	Lsi03G010470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 63..89 score: 2.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 69..83 score: 2.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 69..85 score: 0.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 70..83 score: 9
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 55..92 score: 2.9
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 32..222 score: 1.8
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 32..222 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G010470	Cucumber (Gy14) v2	cgyblsiB257
Lsi03G010470	Melon (DHL92) v3.6.1	lsimedB282
Lsi03G010470	Silver-seed gourd	carlsiB699
Lsi03G010470	Cucumber (Chinese Long) v3	cuclsiB296
Lsi03G010470	Watermelon (97103) v2	lsiwmbB218
Lsi03G010470	Wax gourd	lsiwgoB292
Lsi03G010470	Cucumber (Gy14) v1	cgylsiB111
Lsi03G010470	Cucurbita maxima (Rimu)	cmalsiB115
Lsi03G010470	Cucurbita maxima (Rimu)	cmalsiB240
Lsi03G010470	Cucurbita maxima (Rimu)	cmalsiB422
Lsi03G010470	Cucurbita moschata (Rifu)	cmolsiB108
Lsi03G010470	Cucurbita moschata (Rifu)	cmolsiB228
Lsi03G010470	Cucurbita moschata (Rifu)	cmolsiB409
Lsi03G010470	Cucurbita pepo (Zucchini)	cpelsiB452
Lsi03G010470	Cucurbita pepo (Zucchini)	cpelsiB500
Lsi03G010470	Wild cucumber (PI 183967)	cpilsiB274
Lsi03G010470	Cucumber (Chinese Long) v2	culsiB275
Lsi03G010470	Melon (DHL92) v3.5.1	lsimeB269
Lsi03G010470	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G010470	Watermelon (Charleston Gray)	lsiwcgB221
Lsi03G010470	Watermelon (97103) v1	lsiwmB240