Lsi03G010370 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G010370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_23
Location	chr03 : 19913373 .. 19914648 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACTTTCCAATTTTCAAAAAAGAAAAAAGAAAATTAAACACAGTTCTCTCTCTCGTTGATTCAGAGAAAAATTCCAGCGCAAGAAAGGAAAATAATTCGACATTTCTCTCATTGCAATTGATTCAAACATCTTTCACGTCAAATCTGTTTGATTTCTGAAAGCTTGATTGTCTTCAACCTGCTGCATTTCTGAGAAGATCAGCCATGGATTCATCTTTCTTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTATTTCTGCAAGCTCGAAAAGTGGAAGGGTAAATGTTCTTATTTGGAAAAATTCTGCGTTTGAACAATTTCTGTTTCTTGATTTGAATTCTTTTCGTTTTTTCTTTTAATTCTGTTTTCTTTCTCGCAACTGGATGTTATCTGGAATTGAAAAGTGGAAGTGGAAGTATTCATTTAACTATTTTTAAACGATGGTGATTGTTTCTGACTTCGATTTTTAGAATCCTTTTTCGACTTGTGTAGAACCGAATCGGTATTTTGTAAACCCTAATGATTCAAGTGATTGATCCCTTTTCTTTCGATTCAATTATATTAGACTAGAATCTGTTAAATCTCCACTGCAACGAAGTGGAATGAGACTCAGACAATGAACTGTAGAGTTCCGATTTGAAACCTTTATTGTTACCGTATATGTATTATGTGAAAATTAGCAACATCTAAGGCTAATTTAATTGATTTCTTGTTTGATTCTTTCTTTGTATATTTATATCCTATGAATCTTCCTTGTAAATCATTCAGAATATATTCAATAAAATATACACATTCACATGTACATCTCTACATCCATTTCTATGCAGAAAGAATCAAATAAGAAAACAACTAAGGCCAATTTAGATTGACTTTCTAAGTATTTATAAACATTTTTTTTTGCACTTACAAATACTAATTCAAACACTTAGAAAGTCAATCCAAACGGACCCTAAATTAGAAATCTTGCTAATTTACAACTCACATAATACGTATACGGTAACATTTGTTGTGAATGTTAACCTTTTTTCTTCTTGATACACTGATCACAGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGGCCTTAACAAATTTACATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCAGTCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAAAATGCTGCAGGTTTAG

mRNA sequence

CTACTTTCCAATTTTCAAAAAAGAAAAAAGAAAATTAAACACAGTTCTCTCTCTCGTTGATTCAGAGAAAAATTCCAGCGCAAGAAAGGAAAATAATTCGACATTTCTCTCATTGCAATTGATTCAAACATCTTTCACGTCAAATCTGTTTGATTTCTGAAAGCTTGATTGTCTTCAACCTGCTGCATTTCTGAGAAGATCAGCCATGGATTCATCTTTCTTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTATTTCTGCAAGCTCGAAAAGTGGAAGGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGGCCTTAACAAATTTACATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCAGTCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAAAATGCTGCAGGTTTAG

Coding sequence (CDS)

ATGGATTCATCTTTCTTGAACTTGGACTCTGTTTCAGCATCGAAAAATCGAAGTAACAAACTCACTGCTATCGATTCGGAGAGTAAGAAAGACGACTCTGGCGAGCCTATTTCTGCAAGCTCGAAAAGTGGAAGGAGTAAATTCTCGAAAGAGACAAGCCAATCAACAATGCACGGCCTTAACAAATTTACATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCAGTCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAAAATGCTGCAGGTTTAG

Protein sequence

MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGLNKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQV

Homology

[Close]

BLAST of Lsi03G010370 vs. TrEMBL
Match: A0A0A0KY53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001000 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.2e-32
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+ LNLDSV  ++  S++  A+DS+SKKDDSGEP+SA SKSGRSK  KETSQS MHGL
Sbjct: 1  MDSACLNLDSVPITETHSSEFIAVDSQSKKDDSGEPVSAISKSGRSKLLKETSQSAMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPP RKVSP+KWFPRKN+DSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPRRKVSPIKWFPRKNMDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. TrEMBL
Match: B9SNB8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174720 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MD   L+L  +S    +S + T +D   K+ D+ E +++++K+G+S+  K T QST++ L
Sbjct: 1  MDLGCLDLGCISVLDKQSTE-TNLDHHKKECDASENVTSATKTGKSRSPKGTGQSTLNAL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRK SP+ WFPRK VDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKNSPINWFPRKKVDSYLKRKIKMLQ 97

[Close]

BLAST of Lsi03G010370 vs. TrEMBL
Match: B9GHV9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30390g PE=4 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 7.2e-16
Identity = 54/98 (55.10%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 1   MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
           MD   L+L  +S     S   T +DS  K+ DS E +S+ SK G++K  K T QS ++ L
Sbjct: 6   MDVGCLDLGCISVLDKNSGH-TVLDSVDKECDSSEKVSSGSKPGKNKSPKGTGQSALNAL 65

Query: 61  NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
           NKFTSQIKKP HRK SP+ WFPRK  DSYL+RKIKMLQ
Sbjct: 66  NKFTSQIKKPSHRKNSPINWFPRKKGDSYLQRKIKMLQ 102

[Close]

BLAST of Lsi03G010370 vs. TrEMBL
Match: A0A0B0NRS3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_01514 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 9  DSVSASKNRSNKLTAIDSESKK-DDSGEPI-SASSKSGRSKFSKETSQSTMHGLNKFTSQ 68
          D +  S  +S K+  +DS+ K+ + + EP+ S+SS+ G++K SK+TS S ++ LNKFTSQ
Sbjct: 8  DCMFVSDKKSPKIV-VDSQIKEVEATNEPLASSSSRIGKNKSSKDTSPSALNALNKFTSQ 67

Query: 69 IKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          IKKPPHRK SP+ WFPRK +DSYLKRKIKMLQ
Sbjct: 68 IKKPPHRKNSPLNWFPRKKIDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. TrEMBL
Match: A0A0D2PMG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021000 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 53/92 (57.61%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 9  DSVSASKNRSNKLTAIDSESKK-DDSGEPI-SASSKSGRSKFSKETSQSTMHGLNKFTSQ 68
          D +  S  +S K+  +DS+ K+ + + EP+ S+SS+ G++K SK+TS S ++ LNKFTSQ
Sbjct: 8  DCMFVSDKKSPKIV-VDSQIKEVEATNEPLASSSSRIGKNKSSKDTSPSALNALNKFTSQ 67

Query: 69 IKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          IKKPPHRK SP+ WFPRK +DSYLKRKIKMLQ
Sbjct: 68 IKKPPHRKNSPLNWFPRKKIDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. NCBI nr
Match: gi|659108766|ref|XP_008454377.1| (PREDICTED: LOW QUALITY PROTEIN: reticulocyte-binding protein 2 homolog a [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 9.3e-33
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+ LNLDSV  ++N SN+  A+DS+SKKDDSGEP+SA SKSGRSKF KET+QS MHGL
Sbjct: 1  MDSACLNLDSVPTTENHSNEFIAVDSQSKKDDSGEPVSAISKSGRSKFLKETTQSAMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKP  RKVSP+KWFPRKN+DSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPTRRKVSPIKWFPRKNMDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. NCBI nr
Match: gi|778689218|ref|XP_004152373.2| (PREDICTED: uncharacterized protein LOC101216997 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 6.1e-32
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MDS+ LNLDSV  ++  S++  A+DS+SKKDDSGEP+SA SKSGRSK  KETSQS MHGL
Sbjct: 1  MDSACLNLDSVPITETHSSEFIAVDSQSKKDDSGEPVSAISKSGRSKLLKETSQSAMHGL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPP RKVSP+KWFPRKN+DSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPRRKVSPIKWFPRKNMDSYLKRKIKMLQ 98

[Close]

BLAST of Lsi03G010370 vs. NCBI nr
Match: gi|1000949647|ref|XP_002527487.2| (PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Ricinus communis])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MD   L+L  +S    +S + T +D   K+ D+ E +++++K+G+S+  K T QST++ L
Sbjct: 1  MDLGCLDLGCISVLDKQSTE-TNLDHHKKECDASENVTSATKTGKSRSPKGTGQSTLNAL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRK SP+ WFPRK VDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKNSPINWFPRKKVDSYLKRKIKMLQ 97

[Close]

BLAST of Lsi03G010370 vs. NCBI nr
Match: gi|223533127|gb|EEF34885.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MD   L+L  +S    +S + T +D   K+ D+ E +++++K+G+S+  K T QST++ L
Sbjct: 1  MDLGCLDLGCISVLDKQSTE-TNLDHHKKECDASENVTSATKTGKSRSPKGTGQSTLNAL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKPPHRK SP+ WFPRK VDSYLKRKIKMLQ
Sbjct: 61 NKFTSQIKKPPHRKNSPINWFPRKKVDSYLKRKIKMLQ 97

[Close]

BLAST of Lsi03G010370 vs. NCBI nr
Match: gi|1009150342|ref|XP_015892968.1| (PREDICTED: uncharacterized protein LOC107427134 [Ziziphus jujuba])

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-17
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 1  MDSSFLNLDSVSASKNRSNKLTAIDSESKKDDSGEPISASSKSGRSKFSKETSQSTMHGL 60
          MD   L+L  +S S    +K TA D+E K +DS E ++A+SK G++K  KET QS ++ L
Sbjct: 1  MDLGCLDLGCISMS---DHKFTA-DTERKGNDSSESLTATSKIGKTKSLKETGQSALNSL 60

Query: 61 NKFTSQIKKPPHRKVSPVKWFPRKNVDSYLKRKIKMLQ 99
          NKFTSQIKKP HRK SP+ WFPRK VDSYL+RKIKMLQ
Sbjct: 61 NKFTSQIKKPSHRKGSPLNWFPRKKVDSYLERKIKMLQ 94

The following BLAST results are available for this feature:

BLAST of Lsi03G010370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G010370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY53_CUCSA	4.2e-32	77.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001000 PE=4 SV=1	[more]
B9SNB8_RICCO	1.3e-17	55.10	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174720 PE=4 SV=1	[more]
B9GHV9_POPTR	7.2e-16	55.10	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30390g PE=4 SV=2	[more]
A0A0B0NRS3_GOSAR	1.2e-15	57.61	Uncharacterized protein OS=Gossypium arboreum GN=F383_01514 PE=4 SV=1	[more]
A0A0D2PMG7_GOSRA	1.2e-15	57.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021000 PE=4 SV=1	[more]

BLAST of Lsi03G010370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi03G010370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108766\|ref\|XP_008454377.1\|	9.3e-33	78.57	PREDICTED: LOW QUALITY PROTEIN: reticulocyte-binding protein 2 homolog a [Cucumi...	[more]
gi\|778689218\|ref\|XP_004152373.2\|	6.1e-32	77.55	PREDICTED: uncharacterized protein LOC101216997 [Cucumis sativus]	[more]
gi\|1000949647\|ref\|XP_002527487.2\|	1.9e-17	55.10	PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Ricinus com...	[more]
gi\|223533127\|gb\|EEF34885.1\|	1.9e-17	55.10	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1009150342\|ref\|XP_015892968.1\|	4.2e-17	59.18	PREDICTED: uncharacterized protein LOC107427134 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G010370.1	Lsi03G010370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36325	FAMILY NOT NAMED	coord: 14..98 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G010370	Bhi11G000971	Wax gourd	lsiwgoB292

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G010370	Melon (DHL92) v3.6.1	lsimedB282
Lsi03G010370	Silver-seed gourd	carlsiB269
Lsi03G010370	Silver-seed gourd	carlsiB341
Lsi03G010370	Cucumber (Chinese Long) v3	cuclsiB296
Lsi03G010370	Watermelon (97103) v2	lsiwmbB218
Lsi03G010370	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G010370	Cucumber (Gy14) v1	cgylsiB111
Lsi03G010370	Cucumber (Gy14) v1	cgylsiB366
Lsi03G010370	Cucurbita maxima (Rimu)	cmalsiB115
Lsi03G010370	Cucurbita maxima (Rimu)	cmalsiB307
Lsi03G010370	Cucurbita maxima (Rimu)	cmalsiB657
Lsi03G010370	Cucurbita moschata (Rifu)	cmolsiB108
Lsi03G010370	Cucurbita moschata (Rifu)	cmolsiB294
Lsi03G010370	Cucurbita moschata (Rifu)	cmolsiB646
Lsi03G010370	Cucurbita pepo (Zucchini)	cpelsiB168
Lsi03G010370	Cucurbita pepo (Zucchini)	cpelsiB340
Lsi03G010370	Wild cucumber (PI 183967)	cpilsiB274
Lsi03G010370	Wild cucumber (PI 183967)	cpilsiB282
Lsi03G010370	Wild cucumber (PI 183967)	cpilsiB534
Lsi03G010370	Cucumber (Chinese Long) v2	culsiB275
Lsi03G010370	Cucumber (Chinese Long) v2	culsiB520
Lsi03G010370	Melon (DHL92) v3.5.1	lsimeB253
Lsi03G010370	Melon (DHL92) v3.5.1	lsimeB269
Lsi03G010370	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G010370	Watermelon (97103) v1	lsiwmB240
Lsi03G010370	Cucumber (Gy14) v2	cgyblsiB257