Lsi03G009380 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G009380
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 17968727 .. 17969911 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTATAATAAGAAGTTATGCAGGATCTCCTTGAAAACTACCTTGATCAAAGTGAGTACTCTTTAATGAAAGTCATGTGGATCGAGTTCAGAAAGGACTTACATCTTGGACGAAAGCCTATTTTTCAAAGCCCTTGGAGATTTATCCTCCGTAGATTGCACACTACTCCTCAATGGCCCTTGGAAATTTCATGGGAATCCATATGTTTTCGTGTATTTTTCACAGCCTTCGGAAAGTTGTACGCTTTGTAGATTTCTTCCAATTTCTCCTCAATTAGAGGTTGGGAAGAGGAGATGCTTGTAGCTTAGAAGAAATAAATACGTAAACTCGTTTTTTAGATTTTTGTTCAAAAAAGCATAAAGTTCTTCCAAACAATTCTCTAGAAACTAGAGGTTGGAAAATATGAAAACGAGCCATTTAGTCAAATTATTAACAAGGAACATGTGATAAGTTAAGGATATCTTCATAATAAATAAATTTGTATTTATTCGAACTAATTTTAGTAGAATCAGGTGGATGAGGTTGAGAGTGTGTCCACCTTTTGTCTCAATAGCCTTTTCCTTTTCTTAAATTCAAAATTTCATATTTGCCAACAGATCCTCCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAGTTGAGGAAAGCTCAAGAGCAGGTGAGACAGATAAGAAAGGGAAAAGCGTAGCATCCTTCTCACCGTCACCATCATCGTTGCCATCATCATCTTCATCAGAATCTCATCGACCTGGAGAAACCGAAAGTCCGGTGAGATAGAATAAATGTGCATAAATTATATTGTGTAATAATACAAGACTGCAGATTCACAATGACACGGATGTCTGTCTATTGTATACGGAAGATGCAGTTGGTAAATCTTTAGAAGCAGTCTTCTTCCCCTTTGCCGTGTTGGTTGGTTGATTTGATTGGTTGTAAATGCTGAATTTGGTGTCTCTTTTGAAGCAGTCTATGCGACGGTCAAAAAAGAATATGGAAAGTTATTTTTTTCCTTTTTTTTTTTTTTGGGTTGCTAGAAAAAGCAAAAGAAAGAAAGTTTATTCAAAGATGTTTGGTTTCTATTTTCTTAGTCTAAAAGATGCTTTTTGAAAAGCAATTCAATTCAATTCACATGCGCATGAAATGAAAGCATTGATTGTTTGGAAGTGGACATTTTAGAAAGGTT

mRNA sequence

ATGAATTATAATAAGAAGTTATGCAGGATCTCCTTGAAAACTACCTTGATCAAAATCCTCCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAGTTGAGGAAAGCTCAAGAGCAGGTGAGACAGATAAGAAAGGGAAAAGCGTAGCATCCTTCTCACCGTCACCATCATCGTTGCCATCATCATCTTCATCAGAATCTCATCGACCTGGAGAAACCGAAAGTCCGGTGAGATAGAATAAATGTGCATAAATTATATTGTGTAATAATACAAGACTGCAGATTCACAATGACACGGATGTCTGTCTATTGTATACGGAAGATGCAGTTGGTAAATCTTTAGAAGCAGTCTTCTTCCCCTTTGCCGTGTTGGTTGGTTGATTTGATTGGTTGTAAATGCTGAATTTGGTGTCTCTTTTGAAGCAGTCTATGCGACGGTCAAAAAAGAATATGGAAAGTTATTTTTTTCCTTTTTTTTTTTTTTGGGTTGCTAGAAAAAGCAAAAGAAAGAAAGTTTATTCAAAGATGTTTGGTTTCTATTTTCTTAGTCTAAAAGATGCTTTTTGAAAAGCAATTCAATTCAATTCACATGCGCATGAAATGAAAGCATTGATTGTTTGGAAGTGGACATTTTAGAAAGGTT

Coding sequence (CDS)

ATGAATTATAATAAGAAGTTATGCAGGATCTCCTTGAAAACTACCTTGATCAAAATCCTCCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAGTTGAGGAAAGCTCAAGAGCAGGTGAGACAGATAAGAAAGGGAAAAGCGTAGCATCCTTCTCACCGTCACCATCATCGTTGCCATCATCATCTTCATCAGAATCTCATCGACCTGGAGAAACCGAAAGTCCGGTGAGATAG

Protein sequence

MNYNKKLCRISLKTTLIKILQNQLQLLRKPKVEESSRAGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESPVR
Homology
[Close]
BLAST of Lsi03G009380 vs. TrEMBL
Match: A0A0A0LJG4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013330 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-08
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 17  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESP 76
           I+ LQNQLQLLRKPKVEESSR A E DKKGKS+A    SPSS  S SSS+SH PGETE  
Sbjct: 500 IEFLQNQLQLLRKPKVEESSRGASEADKKGKSLAI---SPSSSASLSSSDSHPPGETERA 558

Query: 77  VR 78
           VR
Sbjct: 560 VR 558

[Close]
BLAST of Lsi03G009380 vs. NCBI nr
Match: gi|659070498|ref|XP_008455400.1| (PREDICTED: E3 ubiquitin-protein ligase synoviolin-like [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 17  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESP 76
           I+ LQNQLQLLRKPKVEESSR A ETDKKGKS+A  SPSPS+  S SSS+SH PGETE  
Sbjct: 500 IEFLQNQLQLLRKPKVEESSRGASETDKKGKSLA-ISPSPSA--SLSSSDSHPPGETERV 558

Query: 77  VR 78
           VR
Sbjct: 560 VR 558

[Close]
BLAST of Lsi03G009380 vs. NCBI nr
Match: gi|449442867|ref|XP_004139202.1| (PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-08
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 17  IKILQNQLQLLRKPKVEESSR-AGETDKKGKSVASFSPSPSSLPSSSSSESHRPGETESP 76
           I+ LQNQLQLLRKPKVEESSR A E DKKGKS+A    SPSS  S SSS+SH PGETE  
Sbjct: 500 IEFLQNQLQLLRKPKVEESSRGASEADKKGKSLAI---SPSSSASLSSSDSHPPGETERA 558

Query: 77  VR 78
           VR
Sbjct: 560 VR 558

The following BLAST results are available for this feature:
BLAST of Lsi03G009380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G009380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJG4_CUCSA4.3e-0872.58Uncharacterized protein OS=Cucumis sativus GN=Csa_2G013330 PE=4 SV=1[more]
BLAST of Lsi03G009380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G009380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659070498|ref|XP_008455400.1|1.2e-0875.81PREDICTED: E3 ubiquitin-protein ligase synoviolin-like [Cucumis melo][more]
gi|449442867|ref|XP_004139202.1|6.2e-0872.58PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G009380.1Lsi03G009380.1mRNA